data_7AKX # _model_server_result.job_id DUwcghi3lZmEqclXcEXDpQ _model_server_result.datetime_utc '2024-11-16 19:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":305}' # _entry.id 7AKX # _exptl.entry_id 7AKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.9 _cell.angle_beta 90.01 _cell.angle_gamma 91.49 _cell.entry_id 7AKX _cell.length_a 40.177 _cell.length_b 56.968 _cell.length_c 62.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,IA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 203 A SER 203 1_555 A N LYR 204 A LYR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A C LYR 204 A LYR 204 1_555 A N ASN 205 A ASN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C SER 203 B SER 203 1_555 B N LYR 204 B LYR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale4 B C LYR 204 B LYR 204 1_555 B N ASN 205 B ASN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 7AKX _atom_sites.fract_transf_matrix[1][1] 0.02489 _atom_sites.fract_transf_matrix[1][2] 0.000647 _atom_sites.fract_transf_matrix[1][3] 0.00029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01756 _atom_sites.fract_transf_matrix[2][3] 0.007783 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 501 501 LFA LFA . D 2 LFA A 1 502 601 LFA LFA . E 2 LFA A 1 503 701 LFA LFA . F 3 OLA A 1 504 801 OLA OLA . G 3 OLA A 1 505 901 OLA OLA . H 2 LFA A 1 506 1001 LFA LFA . I 2 LFA A 1 507 1101 LFA LFA . J 4 OLC A 1 508 1201 OLC OLC . K 2 LFA A 1 509 1301 LFA LFA . L 2 LFA A 1 510 1401 LFA LFA . M 2 LFA A 1 511 1501 LFA LFA . N 2 LFA A 1 512 1601 LFA LFA . O 2 LFA A 1 513 301 LFA LFA . P 2 LFA A 1 514 1 LFA LFA . Q 2 LFA A 1 515 4 LFA LFA . R 2 LFA B 1 301 301 LFA LFA . S 2 LFA B 1 302 401 LFA LFA . T 2 LFA B 1 303 501 LFA LFA . U 3 OLA B 1 304 601 OLA OLA . V 2 LFA B 1 305 701 LFA LFA . W 2 LFA B 1 306 801 LFA LFA . X 4 OLC B 1 307 901 OLC OLC . Y 3 OLA B 1 308 1001 OLA OLA . Z 2 LFA B 1 309 1101 LFA LFA . AA 2 LFA B 1 310 1201 LFA LFA . BA 2 LFA B 1 311 1301 LFA LFA . CA 2 LFA B 1 312 1401 LFA LFA . DA 2 LFA B 1 313 301 LFA LFA . EA 2 LFA B 1 314 2 LFA LFA . FA 2 LFA B 1 315 3 LFA LFA . GA 2 LFA B 1 316 5 LFA LFA . HA 2 LFA B 1 317 6 LFA LFA . IA 5 HOH A 1 601 63 HOH HOH . IA 5 HOH A 2 602 34 HOH HOH . IA 5 HOH A 3 603 82 HOH HOH . IA 5 HOH A 4 604 44 HOH HOH . IA 5 HOH A 5 605 62 HOH HOH . IA 5 HOH A 6 606 97 HOH HOH . IA 5 HOH A 7 607 29 HOH HOH . IA 5 HOH A 8 608 47 HOH HOH . IA 5 HOH A 9 609 23 HOH HOH . IA 5 HOH A 10 610 5 HOH HOH . IA 5 HOH A 11 611 19 HOH HOH . IA 5 HOH A 12 612 26 HOH HOH . IA 5 HOH A 13 613 53 HOH HOH . IA 5 HOH A 14 614 77 HOH HOH . IA 5 HOH A 15 615 28 HOH HOH . IA 5 HOH A 16 616 78 HOH HOH . IA 5 HOH A 17 617 43 HOH HOH . IA 5 HOH A 18 618 31 HOH HOH . IA 5 HOH A 19 619 3 HOH HOH . IA 5 HOH A 20 620 6 HOH HOH . IA 5 HOH A 21 621 96 HOH HOH . IA 5 HOH A 22 622 38 HOH HOH . IA 5 HOH A 23 623 10 HOH HOH . IA 5 HOH A 24 624 13 HOH HOH . IA 5 HOH A 25 625 20 HOH HOH . IA 5 HOH A 26 626 39 HOH HOH . IA 5 HOH A 27 627 84 HOH HOH . IA 5 HOH A 28 628 2 HOH HOH . IA 5 HOH A 29 629 75 HOH HOH . IA 5 HOH A 30 630 27 HOH HOH . IA 5 HOH A 31 631 37 HOH HOH . IA 5 HOH A 32 632 66 HOH HOH . IA 5 HOH A 33 633 12 HOH HOH . IA 5 HOH A 34 634 11 HOH HOH . IA 5 HOH A 35 635 24 HOH HOH . IA 5 HOH A 36 636 67 HOH HOH . IA 5 HOH A 37 637 68 HOH HOH . IA 5 HOH A 38 638 83 HOH HOH . IA 5 HOH A 39 639 40 HOH HOH . IA 5 HOH A 40 640 54 HOH HOH . IA 5 HOH A 41 641 35 HOH HOH . IA 5 HOH A 42 642 30 HOH HOH . IA 5 HOH A 43 643 76 HOH HOH . IA 5 HOH A 44 644 36 HOH HOH . IA 5 HOH A 45 645 87 HOH HOH . IA 5 HOH A 46 646 94 HOH HOH . IA 5 HOH A 47 647 89 HOH HOH . JA 5 HOH B 1 401 21 HOH HOH . JA 5 HOH B 2 402 65 HOH HOH . JA 5 HOH B 3 403 61 HOH HOH . JA 5 HOH B 4 404 79 HOH HOH . JA 5 HOH B 5 405 70 HOH HOH . JA 5 HOH B 6 406 71 HOH HOH . JA 5 HOH B 7 407 51 HOH HOH . JA 5 HOH B 8 408 72 HOH HOH . JA 5 HOH B 9 409 50 HOH HOH . JA 5 HOH B 10 410 25 HOH HOH . JA 5 HOH B 11 411 9 HOH HOH . JA 5 HOH B 12 412 64 HOH HOH . JA 5 HOH B 13 413 42 HOH HOH . JA 5 HOH B 14 414 7 HOH HOH . JA 5 HOH B 15 415 60 HOH HOH . JA 5 HOH B 16 416 45 HOH HOH . JA 5 HOH B 17 417 46 HOH HOH . JA 5 HOH B 18 418 8 HOH HOH . JA 5 HOH B 19 419 88 HOH HOH . JA 5 HOH B 20 420 18 HOH HOH . JA 5 HOH B 21 421 33 HOH HOH . JA 5 HOH B 22 422 22 HOH HOH . JA 5 HOH B 23 423 86 HOH HOH . JA 5 HOH B 24 424 14 HOH HOH . JA 5 HOH B 25 425 17 HOH HOH . JA 5 HOH B 26 426 4 HOH HOH . JA 5 HOH B 27 427 55 HOH HOH . JA 5 HOH B 28 428 15 HOH HOH . JA 5 HOH B 29 429 56 HOH HOH . JA 5 HOH B 30 430 81 HOH HOH . JA 5 HOH B 31 431 32 HOH HOH . JA 5 HOH B 32 432 1 HOH HOH . JA 5 HOH B 33 433 41 HOH HOH . JA 5 HOH B 34 434 16 HOH HOH . JA 5 HOH B 35 435 58 HOH HOH . JA 5 HOH B 36 436 52 HOH HOH . JA 5 HOH B 37 437 91 HOH HOH . JA 5 HOH B 38 438 85 HOH HOH . JA 5 HOH B 39 439 98 HOH HOH . JA 5 HOH B 40 440 57 HOH HOH . JA 5 HOH B 41 441 73 HOH HOH . JA 5 HOH B 42 442 69 HOH HOH . JA 5 HOH B 43 443 92 HOH HOH . JA 5 HOH B 44 444 49 HOH HOH . JA 5 HOH B 45 445 59 HOH HOH . JA 5 HOH B 46 446 80 HOH HOH . JA 5 HOH B 47 447 48 HOH HOH . JA 5 HOH B 48 448 95 HOH HOH . JA 5 HOH B 49 449 74 HOH HOH . JA 5 HOH B 50 450 90 HOH HOH . JA 5 HOH B 51 451 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 LFA . . . V 2 -20.041 25.576 -40.523 1 55.61 ? C8 LFA 305 B 1 HETATM 2 C C9 LFA . . . V 2 -19.322 26.241 -39.378 1 52.45 ? C9 LFA 305 B 1 HETATM 3 C C10 LFA . . . V 2 -19.831 25.84 -38.016 1 49.31 ? C10 LFA 305 B 1 HETATM 4 C C11 LFA . . . V 2 -19.419 26.763 -36.893 1 43.37 ? C11 LFA 305 B 1 HETATM 5 C C12 LFA . . . V 2 -18.822 28.072 -37.344 1 47.07 ? C12 LFA 305 B 1 HETATM 6 C C13 LFA . . . V 2 -18.165 28.866 -36.241 1 49.62 ? C13 LFA 305 B 1 HETATM 7 C C14 LFA . . . V 2 -17.416 30.086 -36.714 1 55.67 ? C14 LFA 305 B 1 HETATM 8 C C15 LFA . . . V 2 -17.026 31.04 -35.613 1 54.27 ? C15 LFA 305 B 1 HETATM 9 C C16 LFA . . . V 2 -18.075 32.073 -35.289 1 50.42 ? C16 LFA 305 B 1 HETATM 10 C C17 LFA . . . V 2 -17.625 33.129 -34.31 1 55.03 ? C17 LFA 305 B 1 HETATM 11 C C18 LFA . . . V 2 -18.708 33.61 -33.374 1 59.22 ? C18 LFA 305 B 1 HETATM 12 C C19 LFA . . . V 2 -18.879 35.107 -33.333 1 54.59 ? C19 LFA 305 B 1 HETATM 13 C C20 LFA . . . V 2 -19.982 35.563 -32.41 1 56.34 ? C20 LFA 305 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #