data_7AKX # _model_server_result.job_id 5LfSDNOl1PfyZ4qfsuQVpQ _model_server_result.datetime_utc '2024-11-16 19:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7akx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":307}' # _entry.id 7AKX # _exptl.entry_id 7AKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 113.9 _cell.angle_beta 90.01 _cell.angle_gamma 91.49 _cell.entry_id 7AKX _cell.length_a 40.177 _cell.length_b 56.968 _cell.length_c 62.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,IA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 203 A SER 203 1_555 A N LYR 204 A LYR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 A C LYR 204 A LYR 204 1_555 A N ASN 205 A ASN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C SER 203 B SER 203 1_555 B N LYR 204 B LYR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale4 B C LYR 204 B LYR 204 1_555 B N ASN 205 B ASN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 423 n n C10 C9 OLC doub 424 n n C10 C11 OLC sing 425 n n C9 C8 OLC sing 426 n n C17 C16 OLC sing 427 z n C11 C12 OLC sing 428 n n C8 C7 OLC sing 429 n n C24 C22 OLC sing 430 n n C24 O25 OLC sing 431 n n C16 C15 OLC sing 432 n n C12 C13 OLC sing 433 n n C7 C6 OLC sing 434 n n C15 C14 OLC sing 435 n n C13 C14 OLC sing 436 n n C6 C5 OLC sing 437 n n C5 C4 OLC sing 438 n n C4 C3 OLC sing 439 n n C3 C2 OLC sing 440 n n C2 C1 OLC sing 441 n n C21 C22 OLC sing 442 n n C21 O20 OLC sing 443 n n C1 O19 OLC doub 444 n n C1 O20 OLC sing 445 n n C22 O23 OLC sing 446 n n C18 H18 OLC sing 447 n n C18 H18A OLC sing 448 n n C18 H18B OLC sing 449 n n C10 H10 OLC sing 450 n n C9 H9 OLC sing 451 n n C17 H17 OLC sing 452 n n C17 H17A OLC sing 453 n n C11 H11 OLC sing 454 n n C11 H11A OLC sing 455 n n C8 H8 OLC sing 456 n n C8 H8A OLC sing 457 n n C24 H24 OLC sing 458 n n C24 H24A OLC sing 459 n n C16 H16 OLC sing 460 n n C16 H16A OLC sing 461 n n C12 H12 OLC sing 462 n n C12 H12A OLC sing 463 n n C7 H7 OLC sing 464 n n C7 H7A OLC sing 465 n n C15 H15 OLC sing 466 n n C15 H15A OLC sing 467 n n C13 H13 OLC sing 468 n n C13 H13A OLC sing 469 n n C6 H6 OLC sing 470 n n C6 H6A OLC sing 471 n n C14 H14 OLC sing 472 n n C14 H14A OLC sing 473 n n C5 H5 OLC sing 474 n n C5 H5A OLC sing 475 n n C4 H4 OLC sing 476 n n C4 H4A OLC sing 477 n n C3 H3 OLC sing 478 n n C3 H3A OLC sing 479 n n C2 H2 OLC sing 480 n n C2 H2A OLC sing 481 n n C21 H21 OLC sing 482 n n C21 H21A OLC sing 483 n n C22 H22 OLC sing 484 n n O25 HO25 OLC sing 485 n n O23 HO23 OLC sing 486 n n # _atom_sites.entry_id 7AKX _atom_sites.fract_transf_matrix[1][1] 0.02489 _atom_sites.fract_transf_matrix[1][2] 0.000647 _atom_sites.fract_transf_matrix[1][3] 0.00029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01756 _atom_sites.fract_transf_matrix[2][3] 0.007783 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 501 501 LFA LFA . D 2 LFA A 1 502 601 LFA LFA . E 2 LFA A 1 503 701 LFA LFA . F 3 OLA A 1 504 801 OLA OLA . G 3 OLA A 1 505 901 OLA OLA . H 2 LFA A 1 506 1001 LFA LFA . I 2 LFA A 1 507 1101 LFA LFA . J 4 OLC A 1 508 1201 OLC OLC . K 2 LFA A 1 509 1301 LFA LFA . L 2 LFA A 1 510 1401 LFA LFA . M 2 LFA A 1 511 1501 LFA LFA . N 2 LFA A 1 512 1601 LFA LFA . O 2 LFA A 1 513 301 LFA LFA . P 2 LFA A 1 514 1 LFA LFA . Q 2 LFA A 1 515 4 LFA LFA . R 2 LFA B 1 301 301 LFA LFA . S 2 LFA B 1 302 401 LFA LFA . T 2 LFA B 1 303 501 LFA LFA . U 3 OLA B 1 304 601 OLA OLA . V 2 LFA B 1 305 701 LFA LFA . W 2 LFA B 1 306 801 LFA LFA . X 4 OLC B 1 307 901 OLC OLC . Y 3 OLA B 1 308 1001 OLA OLA . Z 2 LFA B 1 309 1101 LFA LFA . AA 2 LFA B 1 310 1201 LFA LFA . BA 2 LFA B 1 311 1301 LFA LFA . CA 2 LFA B 1 312 1401 LFA LFA . DA 2 LFA B 1 313 301 LFA LFA . EA 2 LFA B 1 314 2 LFA LFA . FA 2 LFA B 1 315 3 LFA LFA . GA 2 LFA B 1 316 5 LFA LFA . HA 2 LFA B 1 317 6 LFA LFA . IA 5 HOH A 1 601 63 HOH HOH . IA 5 HOH A 2 602 34 HOH HOH . IA 5 HOH A 3 603 82 HOH HOH . IA 5 HOH A 4 604 44 HOH HOH . IA 5 HOH A 5 605 62 HOH HOH . IA 5 HOH A 6 606 97 HOH HOH . IA 5 HOH A 7 607 29 HOH HOH . IA 5 HOH A 8 608 47 HOH HOH . IA 5 HOH A 9 609 23 HOH HOH . IA 5 HOH A 10 610 5 HOH HOH . IA 5 HOH A 11 611 19 HOH HOH . IA 5 HOH A 12 612 26 HOH HOH . IA 5 HOH A 13 613 53 HOH HOH . IA 5 HOH A 14 614 77 HOH HOH . IA 5 HOH A 15 615 28 HOH HOH . IA 5 HOH A 16 616 78 HOH HOH . IA 5 HOH A 17 617 43 HOH HOH . IA 5 HOH A 18 618 31 HOH HOH . IA 5 HOH A 19 619 3 HOH HOH . IA 5 HOH A 20 620 6 HOH HOH . IA 5 HOH A 21 621 96 HOH HOH . IA 5 HOH A 22 622 38 HOH HOH . IA 5 HOH A 23 623 10 HOH HOH . IA 5 HOH A 24 624 13 HOH HOH . IA 5 HOH A 25 625 20 HOH HOH . IA 5 HOH A 26 626 39 HOH HOH . IA 5 HOH A 27 627 84 HOH HOH . IA 5 HOH A 28 628 2 HOH HOH . IA 5 HOH A 29 629 75 HOH HOH . IA 5 HOH A 30 630 27 HOH HOH . IA 5 HOH A 31 631 37 HOH HOH . IA 5 HOH A 32 632 66 HOH HOH . IA 5 HOH A 33 633 12 HOH HOH . IA 5 HOH A 34 634 11 HOH HOH . IA 5 HOH A 35 635 24 HOH HOH . IA 5 HOH A 36 636 67 HOH HOH . IA 5 HOH A 37 637 68 HOH HOH . IA 5 HOH A 38 638 83 HOH HOH . IA 5 HOH A 39 639 40 HOH HOH . IA 5 HOH A 40 640 54 HOH HOH . IA 5 HOH A 41 641 35 HOH HOH . IA 5 HOH A 42 642 30 HOH HOH . IA 5 HOH A 43 643 76 HOH HOH . IA 5 HOH A 44 644 36 HOH HOH . IA 5 HOH A 45 645 87 HOH HOH . IA 5 HOH A 46 646 94 HOH HOH . IA 5 HOH A 47 647 89 HOH HOH . JA 5 HOH B 1 401 21 HOH HOH . JA 5 HOH B 2 402 65 HOH HOH . JA 5 HOH B 3 403 61 HOH HOH . JA 5 HOH B 4 404 79 HOH HOH . JA 5 HOH B 5 405 70 HOH HOH . JA 5 HOH B 6 406 71 HOH HOH . JA 5 HOH B 7 407 51 HOH HOH . JA 5 HOH B 8 408 72 HOH HOH . JA 5 HOH B 9 409 50 HOH HOH . JA 5 HOH B 10 410 25 HOH HOH . JA 5 HOH B 11 411 9 HOH HOH . JA 5 HOH B 12 412 64 HOH HOH . JA 5 HOH B 13 413 42 HOH HOH . JA 5 HOH B 14 414 7 HOH HOH . JA 5 HOH B 15 415 60 HOH HOH . JA 5 HOH B 16 416 45 HOH HOH . JA 5 HOH B 17 417 46 HOH HOH . JA 5 HOH B 18 418 8 HOH HOH . JA 5 HOH B 19 419 88 HOH HOH . JA 5 HOH B 20 420 18 HOH HOH . JA 5 HOH B 21 421 33 HOH HOH . JA 5 HOH B 22 422 22 HOH HOH . JA 5 HOH B 23 423 86 HOH HOH . JA 5 HOH B 24 424 14 HOH HOH . JA 5 HOH B 25 425 17 HOH HOH . JA 5 HOH B 26 426 4 HOH HOH . JA 5 HOH B 27 427 55 HOH HOH . JA 5 HOH B 28 428 15 HOH HOH . JA 5 HOH B 29 429 56 HOH HOH . JA 5 HOH B 30 430 81 HOH HOH . JA 5 HOH B 31 431 32 HOH HOH . JA 5 HOH B 32 432 1 HOH HOH . JA 5 HOH B 33 433 41 HOH HOH . JA 5 HOH B 34 434 16 HOH HOH . JA 5 HOH B 35 435 58 HOH HOH . JA 5 HOH B 36 436 52 HOH HOH . JA 5 HOH B 37 437 91 HOH HOH . JA 5 HOH B 38 438 85 HOH HOH . JA 5 HOH B 39 439 98 HOH HOH . JA 5 HOH B 40 440 57 HOH HOH . JA 5 HOH B 41 441 73 HOH HOH . JA 5 HOH B 42 442 69 HOH HOH . JA 5 HOH B 43 443 92 HOH HOH . JA 5 HOH B 44 444 49 HOH HOH . JA 5 HOH B 45 445 59 HOH HOH . JA 5 HOH B 46 446 80 HOH HOH . JA 5 HOH B 47 447 48 HOH HOH . JA 5 HOH B 48 448 95 HOH HOH . JA 5 HOH B 49 449 74 HOH HOH . JA 5 HOH B 50 450 90 HOH HOH . JA 5 HOH B 51 451 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . X 4 -5.398 13.662 -36.597 1 60.36 ? C9 OLC 307 B 1 HETATM 2 C C8 OLC . . . X 4 -6.208 14.602 -37.455 1 56.53 ? C8 OLC 307 B 1 HETATM 3 C C24 OLC . . . X 4 -8.807 4.688 -39.411 0.5 41.28 ? C24 OLC 307 B 1 HETATM 4 C C7 OLC . . . X 4 -6.913 13.848 -38.58 1 54.32 ? C7 OLC 307 B 1 HETATM 5 C C6 OLC . . . X 4 -6.138 12.615 -39.029 1 50.65 ? C6 OLC 307 B 1 HETATM 6 C C5 OLC . . . X 4 -7.076 11.555 -39.591 1 53.22 ? C5 OLC 307 B 1 HETATM 7 C C4 OLC . . . X 4 -6.381 10.715 -40.653 1 53.87 ? C4 OLC 307 B 1 HETATM 8 C C3 OLC . . . X 4 -6.902 9.283 -40.673 1 48.9 ? C3 OLC 307 B 1 HETATM 9 C C2 OLC . . . X 4 -6.018 8.359 -39.848 1 48.6 ? C2 OLC 307 B 1 HETATM 10 C C21 OLC . . . X 4 -7.735 5.404 -41.562 0.5 45.37 ? C21 OLC 307 B 1 HETATM 11 C C1 OLC . . . X 4 -6.371 6.92 -40.142 0.5 46.2 ? C1 OLC 307 B 1 HETATM 12 C C22 OLC . . . X 4 -8.082 4.22 -40.669 0.5 44.73 ? C22 OLC 307 B 1 HETATM 13 O O19 OLC . . . X 4 -5.614 6.011 -39.843 0.5 48.06 ? O19 OLC 307 B 1 HETATM 14 O O25 OLC . . . X 4 -10.123 4.124 -39.36 0.5 44.51 ? O25 OLC 307 B 1 HETATM 15 O O23 OLC . . . X 4 -8.91 3.314 -41.403 0.5 44.97 ? O23 OLC 307 B 1 HETATM 16 O O20 OLC . . . X 4 -7.629 6.597 -40.791 0.5 44.62 ? O20 OLC 307 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #