data_7AL7 # _model_server_result.job_id nMiy8SaMq4EBNspqD5o1Tg _model_server_result.datetime_utc '2024-10-19 00:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7al7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7AL7 # _exptl.entry_id 7AL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.86 _cell.angle_gamma 90 _cell.entry_id 7AL7 _cell.length_a 109.815 _cell.length_b 44.52 _cell.length_c 60.276 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 64 1_555 A SG CYS 29 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 26 A CYS 86 1_555 A SG CYS 90 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf3 A SG CYS 71 A CYS 131 1_555 B SG CYS 271 B CYS 74 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? covale ? covale1 A C PCA 3 A PCA 63 1_555 A N CYS 4 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A ND2 ASN 19 A ASN 79 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale3 A ND2 ASN 43 A ASN 103 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? covale ? covale4 A ND2 ASN 87 A ASN 147 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale5 B C LYS 300 B LYS 103 1_555 B N CSO 301 B CSO 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 B C CSO 301 B CSO 104 1_555 B N GLU 302 B GLU 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 251 n n C1 O1 NAG sing 252 n n C1 O5 NAG sing 253 n n C1 H1 NAG sing 254 n n C2 C3 NAG sing 255 n n C2 N2 NAG sing 256 n n C2 H2 NAG sing 257 n n C3 C4 NAG sing 258 n n C3 O3 NAG sing 259 n n C3 H3 NAG sing 260 n n C4 C5 NAG sing 261 n n C4 O4 NAG sing 262 n n C4 H4 NAG sing 263 n n C5 C6 NAG sing 264 n n C5 O5 NAG sing 265 n n C5 H5 NAG sing 266 n n C6 O6 NAG sing 267 n n C6 H61 NAG sing 268 n n C6 H62 NAG sing 269 n n C7 C8 NAG sing 270 n n C7 N2 NAG sing 271 n n C7 O7 NAG doub 272 n n C8 H81 NAG sing 273 n n C8 H82 NAG sing 274 n n C8 H83 NAG sing 275 n n N2 HN2 NAG sing 276 n n O1 HO1 NAG sing 277 n n O3 HO3 NAG sing 278 n n O4 HO4 NAG sing 279 n n O6 HO6 NAG sing 280 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7AL7 _atom_sites.fract_transf_matrix[1][1] 0.009106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001583 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 180 NAG NAG . D 3 NAG A 1 302 181 NAG NAG . E 3 NAG A 1 303 182 NAG NAG . F 4 HOH A 1 401 219 HOH HOH . F 4 HOH A 2 402 241 HOH HOH . F 4 HOH A 3 403 244 HOH HOH . F 4 HOH A 4 404 191 HOH HOH . F 4 HOH A 5 405 243 HOH HOH . F 4 HOH A 6 406 209 HOH HOH . F 4 HOH A 7 407 217 HOH HOH . F 4 HOH A 8 408 199 HOH HOH . F 4 HOH A 9 409 192 HOH HOH . F 4 HOH A 10 410 205 HOH HOH . F 4 HOH A 11 411 212 HOH HOH . F 4 HOH A 12 412 233 HOH HOH . F 4 HOH A 13 413 193 HOH HOH . F 4 HOH A 14 414 206 HOH HOH . F 4 HOH A 15 415 226 HOH HOH . F 4 HOH A 16 416 220 HOH HOH . F 4 HOH A 17 417 245 HOH HOH . F 4 HOH A 18 418 221 HOH HOH . F 4 HOH A 19 419 197 HOH HOH . F 4 HOH A 20 420 202 HOH HOH . F 4 HOH A 21 421 213 HOH HOH . F 4 HOH A 22 422 195 HOH HOH . F 4 HOH A 23 423 231 HOH HOH . F 4 HOH A 24 424 190 HOH HOH . F 4 HOH A 25 425 198 HOH HOH . F 4 HOH A 26 426 203 HOH HOH . F 4 HOH A 27 427 218 HOH HOH . F 4 HOH A 28 428 215 HOH HOH . F 4 HOH A 29 429 210 HOH HOH . F 4 HOH A 30 430 208 HOH HOH . F 4 HOH A 31 431 201 HOH HOH . F 4 HOH A 32 432 223 HOH HOH . F 4 HOH A 33 433 229 HOH HOH . F 4 HOH A 34 434 228 HOH HOH . F 4 HOH A 35 435 194 HOH HOH . F 4 HOH A 36 436 238 HOH HOH . F 4 HOH A 37 437 214 HOH HOH . F 4 HOH A 38 438 225 HOH HOH . F 4 HOH A 39 439 232 HOH HOH . F 4 HOH A 40 440 200 HOH HOH . F 4 HOH A 41 441 239 HOH HOH . F 4 HOH A 42 442 207 HOH HOH . F 4 HOH A 43 443 237 HOH HOH . F 4 HOH A 44 444 211 HOH HOH . F 4 HOH A 45 445 230 HOH HOH . F 4 HOH A 46 446 216 HOH HOH . F 4 HOH A 47 447 242 HOH HOH . F 4 HOH A 48 448 196 HOH HOH . F 4 HOH A 49 449 204 HOH HOH . F 4 HOH A 50 450 240 HOH HOH . F 4 HOH A 51 451 227 HOH HOH . F 4 HOH A 52 452 234 HOH HOH . F 4 HOH A 53 453 236 HOH HOH . G 4 HOH B 1 201 273 HOH HOH . G 4 HOH B 2 202 261 HOH HOH . G 4 HOH B 3 203 232 HOH HOH . G 4 HOH B 4 204 271 HOH HOH . G 4 HOH B 5 205 222 HOH HOH . G 4 HOH B 6 206 248 HOH HOH . G 4 HOH B 7 207 242 HOH HOH . G 4 HOH B 8 208 245 HOH HOH . G 4 HOH B 9 209 267 HOH HOH . G 4 HOH B 10 210 238 HOH HOH . G 4 HOH B 11 211 220 HOH HOH . G 4 HOH B 12 212 230 HOH HOH . G 4 HOH B 13 213 256 HOH HOH . G 4 HOH B 14 214 214 HOH HOH . G 4 HOH B 15 215 205 HOH HOH . G 4 HOH B 16 216 210 HOH HOH . G 4 HOH B 17 217 234 HOH HOH . G 4 HOH B 18 218 209 HOH HOH . G 4 HOH B 19 219 259 HOH HOH . G 4 HOH B 20 220 265 HOH HOH . G 4 HOH B 21 221 204 HOH HOH . G 4 HOH B 22 222 252 HOH HOH . G 4 HOH B 23 223 201 HOH HOH . G 4 HOH B 24 224 212 HOH HOH . G 4 HOH B 25 225 269 HOH HOH . G 4 HOH B 26 226 239 HOH HOH . G 4 HOH B 27 227 202 HOH HOH . G 4 HOH B 28 228 251 HOH HOH . G 4 HOH B 29 229 227 HOH HOH . G 4 HOH B 30 230 255 HOH HOH . G 4 HOH B 31 231 225 HOH HOH . G 4 HOH B 32 232 258 HOH HOH . G 4 HOH B 33 233 272 HOH HOH . G 4 HOH B 34 234 208 HOH HOH . G 4 HOH B 35 235 223 HOH HOH . G 4 HOH B 36 236 236 HOH HOH . G 4 HOH B 37 237 231 HOH HOH . G 4 HOH B 38 238 229 HOH HOH . G 4 HOH B 39 239 207 HOH HOH . G 4 HOH B 40 240 206 HOH HOH . G 4 HOH B 41 241 241 HOH HOH . G 4 HOH B 42 242 253 HOH HOH . G 4 HOH B 43 243 243 HOH HOH . G 4 HOH B 44 244 270 HOH HOH . G 4 HOH B 45 245 203 HOH HOH . G 4 HOH B 46 246 235 HOH HOH . G 4 HOH B 47 247 221 HOH HOH . G 4 HOH B 48 248 224 HOH HOH . G 4 HOH B 49 249 226 HOH HOH . G 4 HOH B 50 250 200 HOH HOH . G 4 HOH B 51 251 216 HOH HOH . G 4 HOH B 52 252 266 HOH HOH . G 4 HOH B 53 253 228 HOH HOH . G 4 HOH B 54 254 264 HOH HOH . G 4 HOH B 55 255 260 HOH HOH . G 4 HOH B 56 256 219 HOH HOH . G 4 HOH B 57 257 262 HOH HOH . G 4 HOH B 58 258 218 HOH HOH . G 4 HOH B 59 259 215 HOH HOH . G 4 HOH B 60 260 213 HOH HOH . G 4 HOH B 61 261 217 HOH HOH . G 4 HOH B 62 262 211 HOH HOH . G 4 HOH B 63 263 268 HOH HOH . G 4 HOH B 64 264 233 HOH HOH . G 4 HOH B 65 265 257 HOH HOH . G 4 HOH B 66 266 246 HOH HOH . G 4 HOH B 67 267 254 HOH HOH . G 4 HOH B 68 268 244 HOH HOH . G 4 HOH B 69 269 247 HOH HOH . G 4 HOH B 70 270 263 HOH HOH . G 4 HOH B 71 271 240 HOH HOH . G 4 HOH B 72 272 249 HOH HOH . G 4 HOH B 73 273 250 HOH HOH . G 4 HOH B 74 274 222 HOH HOH . G 4 HOH B 75 275 237 HOH HOH . G 4 HOH B 76 276 235 HOH HOH . G 4 HOH B 77 277 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 28.271 12.336 -9.958 1 36.13 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . C 3 27.882 13.602 -10.659 1 33.83 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . C 3 28.866 13.878 -11.789 1 42.29 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . C 3 30.298 13.871 -11.262 1 42.8 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . C 3 30.584 12.652 -10.378 1 46.51 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . C 3 31.891 12.77 -9.625 1 53.96 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . C 3 25.608 14.474 -10.921 1 41.07 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . C 3 24.253 14.253 -11.52 1 38.73 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . C 3 26.52 13.526 -11.161 1 37.77 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . C 3 28.562 15.141 -12.373 1 32.68 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . C 3 31.205 13.822 -12.356 1 41.46 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . C 3 29.555 12.488 -9.39 1 34.54 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . C 3 31.92 13.918 -8.788 1 54.94 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . C 3 25.868 15.467 -10.251 1 44.22 ? O7 NAG 301 A 1 HETATM 15 H H1 NAG . . . C 3 28.288 11.603 -10.601 1 43.38 ? H1 NAG 301 A 1 HETATM 16 H H2 NAG . . . C 3 27.928 14.343 -10.025 1 40.61 ? H2 NAG 301 A 1 HETATM 17 H H3 NAG . . . C 3 28.781 13.183 -12.47 1 50.76 ? H3 NAG 301 A 1 HETATM 18 H H4 NAG . . . C 3 30.419 14.68 -10.73 1 51.37 ? H4 NAG 301 A 1 HETATM 19 H H5 NAG . . . C 3 30.599 11.856 -10.942 1 55.82 ? H5 NAG 301 A 1 HETATM 20 H H61 NAG . . . C 3 32.624 12.829 -10.267 1 64.76 ? H61 NAG 301 A 1 HETATM 21 H H62 NAG . . . C 3 32.013 11.973 -9.074 1 64.76 ? H62 NAG 301 A 1 HETATM 22 H H81 NAG . . . C 3 23.849 13.457 -11.125 1 46.5 ? H81 NAG 301 A 1 HETATM 23 H H82 NAG . . . C 3 24.34 14.128 -12.484 1 46.5 ? H82 NAG 301 A 1 HETATM 24 H H83 NAG . . . C 3 23.688 15.027 -11.342 1 46.5 ? H83 NAG 301 A 1 HETATM 25 H HN2 NAG . . . C 3 26.278 12.802 -11.66 1 45.34 ? HN2 NAG 301 A 1 HETATM 26 H HO3 NAG . . . C 3 29.161 15.324 -13.003 1 39.23 ? HO3 NAG 301 A 1 HETATM 27 H HO4 NAG . . . C 3 31.114 13.039 -12.768 1 49.77 ? HO4 NAG 301 A 1 HETATM 28 H HO6 NAG . . . C 3 31.347 13.808 -8.118 1 65.94 ? HO6 NAG 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 28 #