data_7ALE
#
_model_server_result.job_id            Std6FyJ-ynrKH20Em6eAbw 
_model_server_result.datetime_utc      '2024-11-22 03:04:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ale 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    7ALE 
#
_exptl.entry_id    7ALE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.283 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-[[5-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]car bonylamino]butanedioic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ALE 
_cell.length_a            60.772 
_cell.length_b            152.44 
_cell.length_c            222.755 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ALE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C13 H19 N4 O12 P' 
_chem_comp.formula_weight    454.283 
_chem_comp.id                OK8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-[[5-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]car bonylamino]butanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SAICAR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C21 OK8 sing 235 n n 
C20 C21 OK8 sing 236 n n 
C20 O19 OK8 sing 237 n n 
C20 C25 OK8 sing 238 n n 
C21 C23 OK8 sing 239 n n 
O19 C18 OK8 sing 240 n n 
C25 O26 OK8 sing 241 n n 
C18 C23 OK8 sing 242 n n 
C18 N15 OK8 sing 243 n n 
C23 O24 OK8 sing 244 n n 
O26 P27 OK8 sing 245 n n 
N17 C16 OK8 sing 246 n n 
N15 C16 OK8 sing 247 n y 
N15 C14 OK8 sing 248 n y 
O30 P27 OK8 doub 249 n n 
O29 P27 OK8 sing 250 n n 
C16 C12 OK8 doub 251 n y 
P27 O28 OK8 sing 252 n n 
C14 N13 OK8 doub 253 n y 
C12 N13 OK8 sing 254 n y 
C12 C10 OK8 sing 255 n n 
O11 C10 OK8 doub 256 n n 
C10 N09 OK8 sing 257 n n 
N09 C05 OK8 sing 258 n n 
O08 C06 OK8 doub 259 n n 
C05 C06 OK8 sing 260 n n 
C05 C04 OK8 sing 261 n n 
C06 O07 OK8 sing 262 n n 
O01 C02 OK8 doub 263 n n 
C02 C04 OK8 sing 264 n n 
C02 O03 OK8 sing 265 n n 
C20 H1 OK8 sing 266 n n 
C21 H2 OK8 sing 267 n n 
O03 H3 OK8 sing 268 n n 
C04 H4 OK8 sing 269 n n 
C04 H5 OK8 sing 270 n n 
C05 H6 OK8 sing 271 n n 
O07 H7 OK8 sing 272 n n 
N09 H8 OK8 sing 273 n n 
C14 H9 OK8 sing 274 n n 
N17 H10 OK8 sing 275 n n 
N17 H11 OK8 sing 276 n n 
C18 H12 OK8 sing 277 n n 
O22 H13 OK8 sing 278 n n 
C23 H14 OK8 sing 279 n n 
O24 H15 OK8 sing 280 n n 
C25 H16 OK8 sing 281 n n 
C25 H17 OK8 sing 282 n n 
O28 H18 OK8 sing 283 n n 
O29 H19 OK8 sing 284 n n 
#
_atom_sites.entry_id                     7ALE 
_atom_sites.fract_transf_matrix[1][1]    0.016455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RLK A 1 501 501 RLK DRG . 
D 3 OK8 A 1 502 601 OK8 LIG . 
E 2 RLK B 1 501 501 RLK DRG . 
F 3 OK8 B 1 502 601 OK8 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OK8 . . . F 3 10.78 60.55 15.542 1 41.14 ? C10 OK8 502 B 1 
HETATM 2 C C20 OK8 . . . F 3 5.761 56.008 15.311 1 26.04 ? C20 OK8 502 B 1 
HETATM 3 C C21 OK8 . . . F 3 5.631 56.515 16.678 1 26.26 ? C21 OK8 502 B 1 
HETATM 4 O O01 OK8 . . . F 3 13.736 62.149 17.579 1 54.63 ? O01 OK8 502 B 1 
HETATM 5 C C02 OK8 . . . F 3 13.413 63.059 16.788 1 57.44 ? C02 OK8 502 B 1 
HETATM 6 O O03 OK8 . . . F 3 14.239 63.859 16.32 1 58.38 -1 O03 OK8 502 B 1 
HETATM 7 C C04 OK8 . . . F 3 11.94 63.212 16.368 1 55.73 ? C04 OK8 502 B 1 
HETATM 8 C C05 OK8 . . . F 3 11.036 62.501 17.288 1 53.92 ? C05 OK8 502 B 1 
HETATM 9 C C06 OK8 . . . F 3 9.786 63.413 17.605 1 56.1 ? C06 OK8 502 B 1 
HETATM 10 O O07 OK8 . . . F 3 9.846 64.618 17.345 1 57.68 ? O07 OK8 502 B 1 
HETATM 11 O O08 OK8 . . . F 3 8.769 62.873 18.089 1 54.08 -1 O08 OK8 502 B 1 
HETATM 12 N N09 OK8 . . . F 3 10.492 61.304 16.65 1 51.51 ? N09 OK8 502 B 1 
HETATM 13 O O11 OK8 . . . F 3 11.607 60.822 14.733 1 36.54 ? O11 OK8 502 B 1 
HETATM 14 C C12 OK8 . . . F 3 9.904 59.469 15.262 1 36.21 ? C12 OK8 502 B 1 
HETATM 15 N N13 OK8 . . . F 3 9.316 59.294 14.091 1 35.35 ? N13 OK8 502 B 1 
HETATM 16 C C14 OK8 . . . F 3 8.496 58.313 14.236 1 32.8 ? C14 OK8 502 B 1 
HETATM 17 N N15 OK8 . . . F 3 8.5 57.863 15.487 1 30.44 ? N15 OK8 502 B 1 
HETATM 18 C C16 OK8 . . . F 3 9.335 58.573 16.161 1 33.42 ? C16 OK8 502 B 1 
HETATM 19 N N17 OK8 . . . F 3 9.511 58.319 17.477 1 34.57 ? N17 OK8 502 B 1 
HETATM 20 C C18 OK8 . . . F 3 7.719 56.847 15.994 1 27.63 ? C18 OK8 502 B 1 
HETATM 21 O O19 OK8 . . . F 3 7.027 56.28 15.001 1 26.16 ? O19 OK8 502 B 1 
HETATM 22 O O22 OK8 . . . F 3 5.969 55.542 17.446 1 26.02 ? O22 OK8 502 B 1 
HETATM 23 C C23 OK8 . . . F 3 6.637 57.54 16.803 1 26 ? C23 OK8 502 B 1 
HETATM 24 O O24 OK8 . . . F 3 7.02 57.845 18.082 1 24.54 ? O24 OK8 502 B 1 
HETATM 25 C C25 OK8 . . . F 3 4.923 56.756 14.277 1 26 ? C25 OK8 502 B 1 
HETATM 26 O O26 OK8 . . . F 3 4.208 57.683 14.789 1 24.5 ? O26 OK8 502 B 1 
HETATM 27 P P27 OK8 . . . F 3 3.579 58.922 13.808 1 21.83 ? P27 OK8 502 B 1 
HETATM 28 O O28 OK8 . . . F 3 4.711 59.645 13.384 1 21.72 ? O28 OK8 502 B 1 
HETATM 29 O O29 OK8 . . . F 3 2.817 58.36 12.77 1 22.1 -1 O29 OK8 502 B 1 
HETATM 30 O O30 OK8 . . . F 3 2.828 59.558 14.816 1 22.48 -1 O30 OK8 502 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#