data_7ALE # _model_server_result.job_id iz7VAYo-5qek0XNsyRX5Zw _model_server_result.datetime_utc '2024-11-05 10:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ale # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 7ALE # _exptl.entry_id 7ALE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.283 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[5-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]car bonylamino]butanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ALE _cell.length_a 60.772 _cell.length_b 152.44 _cell.length_c 222.755 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ALE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C13 H19 N4 O12 P' _chem_comp.formula_weight 454.283 _chem_comp.id OK8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[5-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]car bonylamino]butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SAICAR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 OK8 sing 235 n n C20 C21 OK8 sing 236 n n C20 O19 OK8 sing 237 n n C20 C25 OK8 sing 238 n n C21 C23 OK8 sing 239 n n O19 C18 OK8 sing 240 n n C25 O26 OK8 sing 241 n n C18 C23 OK8 sing 242 n n C18 N15 OK8 sing 243 n n C23 O24 OK8 sing 244 n n O26 P27 OK8 sing 245 n n N17 C16 OK8 sing 246 n n N15 C16 OK8 sing 247 n y N15 C14 OK8 sing 248 n y O30 P27 OK8 doub 249 n n O29 P27 OK8 sing 250 n n C16 C12 OK8 doub 251 n y P27 O28 OK8 sing 252 n n C14 N13 OK8 doub 253 n y C12 N13 OK8 sing 254 n y C12 C10 OK8 sing 255 n n O11 C10 OK8 doub 256 n n C10 N09 OK8 sing 257 n n N09 C05 OK8 sing 258 n n O08 C06 OK8 doub 259 n n C05 C06 OK8 sing 260 n n C05 C04 OK8 sing 261 n n C06 O07 OK8 sing 262 n n O01 C02 OK8 doub 263 n n C02 C04 OK8 sing 264 n n C02 O03 OK8 sing 265 n n C20 H1 OK8 sing 266 n n C21 H2 OK8 sing 267 n n O03 H3 OK8 sing 268 n n C04 H4 OK8 sing 269 n n C04 H5 OK8 sing 270 n n C05 H6 OK8 sing 271 n n O07 H7 OK8 sing 272 n n N09 H8 OK8 sing 273 n n C14 H9 OK8 sing 274 n n N17 H10 OK8 sing 275 n n N17 H11 OK8 sing 276 n n C18 H12 OK8 sing 277 n n O22 H13 OK8 sing 278 n n C23 H14 OK8 sing 279 n n O24 H15 OK8 sing 280 n n C25 H16 OK8 sing 281 n n C25 H17 OK8 sing 282 n n O28 H18 OK8 sing 283 n n O29 H19 OK8 sing 284 n n # _atom_sites.entry_id 7ALE _atom_sites.fract_transf_matrix[1][1] 0.016455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RLK A 1 501 501 RLK DRG . D 3 OK8 A 1 502 601 OK8 LIG . E 2 RLK B 1 501 501 RLK DRG . F 3 OK8 B 1 502 601 OK8 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OK8 . . . F 3 10.78 60.55 15.542 1 41.14 ? C10 OK8 502 B 1 HETATM 2 C C20 OK8 . . . F 3 5.761 56.008 15.311 1 26.04 ? C20 OK8 502 B 1 HETATM 3 C C21 OK8 . . . F 3 5.631 56.515 16.678 1 26.26 ? C21 OK8 502 B 1 HETATM 4 O O01 OK8 . . . F 3 13.736 62.149 17.579 1 54.63 ? O01 OK8 502 B 1 HETATM 5 C C02 OK8 . . . F 3 13.413 63.059 16.788 1 57.44 ? C02 OK8 502 B 1 HETATM 6 O O03 OK8 . . . F 3 14.239 63.859 16.32 1 58.38 -1 O03 OK8 502 B 1 HETATM 7 C C04 OK8 . . . F 3 11.94 63.212 16.368 1 55.73 ? C04 OK8 502 B 1 HETATM 8 C C05 OK8 . . . F 3 11.036 62.501 17.288 1 53.92 ? C05 OK8 502 B 1 HETATM 9 C C06 OK8 . . . F 3 9.786 63.413 17.605 1 56.1 ? C06 OK8 502 B 1 HETATM 10 O O07 OK8 . . . F 3 9.846 64.618 17.345 1 57.68 ? O07 OK8 502 B 1 HETATM 11 O O08 OK8 . . . F 3 8.769 62.873 18.089 1 54.08 -1 O08 OK8 502 B 1 HETATM 12 N N09 OK8 . . . F 3 10.492 61.304 16.65 1 51.51 ? N09 OK8 502 B 1 HETATM 13 O O11 OK8 . . . F 3 11.607 60.822 14.733 1 36.54 ? O11 OK8 502 B 1 HETATM 14 C C12 OK8 . . . F 3 9.904 59.469 15.262 1 36.21 ? C12 OK8 502 B 1 HETATM 15 N N13 OK8 . . . F 3 9.316 59.294 14.091 1 35.35 ? N13 OK8 502 B 1 HETATM 16 C C14 OK8 . . . F 3 8.496 58.313 14.236 1 32.8 ? C14 OK8 502 B 1 HETATM 17 N N15 OK8 . . . F 3 8.5 57.863 15.487 1 30.44 ? N15 OK8 502 B 1 HETATM 18 C C16 OK8 . . . F 3 9.335 58.573 16.161 1 33.42 ? C16 OK8 502 B 1 HETATM 19 N N17 OK8 . . . F 3 9.511 58.319 17.477 1 34.57 ? N17 OK8 502 B 1 HETATM 20 C C18 OK8 . . . F 3 7.719 56.847 15.994 1 27.63 ? C18 OK8 502 B 1 HETATM 21 O O19 OK8 . . . F 3 7.027 56.28 15.001 1 26.16 ? O19 OK8 502 B 1 HETATM 22 O O22 OK8 . . . F 3 5.969 55.542 17.446 1 26.02 ? O22 OK8 502 B 1 HETATM 23 C C23 OK8 . . . F 3 6.637 57.54 16.803 1 26 ? C23 OK8 502 B 1 HETATM 24 O O24 OK8 . . . F 3 7.02 57.845 18.082 1 24.54 ? O24 OK8 502 B 1 HETATM 25 C C25 OK8 . . . F 3 4.923 56.756 14.277 1 26 ? C25 OK8 502 B 1 HETATM 26 O O26 OK8 . . . F 3 4.208 57.683 14.789 1 24.5 ? O26 OK8 502 B 1 HETATM 27 P P27 OK8 . . . F 3 3.579 58.922 13.808 1 21.83 ? P27 OK8 502 B 1 HETATM 28 O O28 OK8 . . . F 3 4.711 59.645 13.384 1 21.72 ? O28 OK8 502 B 1 HETATM 29 O O29 OK8 . . . F 3 2.817 58.36 12.77 1 22.1 -1 O29 OK8 502 B 1 HETATM 30 O O30 OK8 . . . F 3 2.828 59.558 14.816 1 22.48 -1 O30 OK8 502 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #