data_7AMG # _model_server_result.job_id xs_V9SG_p7JlfOfQ9AnJQw _model_server_result.datetime_utc '2024-12-26 23:22:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7amg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 7AMG # _exptl.entry_id 7AMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 830.314 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R})-4-[4-[[(2~{S})-2-[[2,2-bis(fluoranyl)-2-phenyl-ethanoyl]amino]-3-(2-chlorophenyl)propanoyl]amino]phenyl]-3-[[(2~{S})-3-methyl-2-[2-[2-[(2-methylpropan-2-yl)oxycarbonylamino]ethoxy]ethanoylamino]butanoyl]amino]butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.54 _cell.angle_gamma 90 _cell.entry_id 7AMG _cell.length_a 165.006 _cell.length_b 119.043 _cell.length_c 54.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 71 1_555 A SG CYS 103 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf2 A SG CYS 58 A CYS 76 1_555 A SG CYS 105 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 88 A CYS 106 1_555 C SG CYS 88 C CYS 106 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf4 B SG CYS 53 B CYS 71 1_555 B SG CYS 103 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf5 B SG CYS 58 B CYS 76 1_555 B SG CYS 105 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 88 B CYS 106 1_555 D SG CYS 88 D CYS 106 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? disulf ? disulf7 C SG CYS 53 C CYS 71 1_555 C SG CYS 103 C CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf8 C SG CYS 58 C CYS 76 1_555 C SG CYS 105 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 D SG CYS 53 D CYS 71 1_555 D SG CYS 103 D CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf10 D SG CYS 58 D CYS 76 1_555 D SG CYS 105 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C41 H50 Cl F2 N5 O9' _chem_comp.formula_weight 830.314 _chem_comp.id RMQ _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R})-4-[4-[[(2~{S})-2-[[2,2-bis(fluoranyl)-2-phenyl-ethanoyl]amino]-3-(2-chlorophenyl)propanoyl]amino]phenyl]-3-[[(2~{S})-3-methyl-2-[2-[2-[(2-methylpropan-2-yl)oxycarbonylamino]ethoxy]ethanoylamino]butanoyl]amino]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C28 RMQ sing 277 n n F C34 RMQ sing 278 n n C36 C37 RMQ doub 279 n y C36 C35 RMQ sing 280 n y C37 C38 RMQ sing 281 n y F1 C34 RMQ sing 282 n n C34 C35 RMQ sing 283 n n C34 C33 RMQ sing 284 n n C29 C28 RMQ doub 285 n y C29 C30 RMQ sing 286 n y C35 C40 RMQ doub 287 n y C28 C27 RMQ sing 288 n y C38 C39 RMQ doub 289 n y C30 C31 RMQ doub 290 n y C33 N4 RMQ sing 291 n n C33 O7 RMQ doub 292 n n N4 C25 RMQ sing 293 n n C40 C39 RMQ sing 294 n y C27 C26 RMQ sing 295 n n C27 C32 RMQ doub 296 n y C26 C25 RMQ sing 297 n n C25 C24 RMQ sing 298 n n C31 C32 RMQ sing 299 n y C24 O8 RMQ doub 300 n n C24 N3 RMQ sing 301 n n C23 C20 RMQ sing 302 n n C21 C20 RMQ sing 303 n n N3 C1 RMQ sing 304 n n C20 O3 RMQ sing 305 n n C20 C22 RMQ sing 306 n n O3 C19 RMQ sing 307 n n O4 C19 RMQ doub 308 n n C1 C2 RMQ doub 309 n y C1 C RMQ sing 310 n y C13 C12 RMQ sing 311 n n C19 N2 RMQ sing 312 n n C2 C3 RMQ sing 313 n y C14 C12 RMQ sing 314 n n C C5 RMQ doub 315 n y C12 C11 RMQ sing 316 n n N2 C18 RMQ sing 317 n n O2 C16 RMQ sing 318 n n O2 C17 RMQ sing 319 n n C3 C4 RMQ doub 320 n y C16 C15 RMQ sing 321 n n C17 C18 RMQ sing 322 n n O5 C15 RMQ doub 323 n n C15 N1 RMQ sing 324 n n C5 C4 RMQ sing 325 n y C11 N1 RMQ sing 326 n n C11 C10 RMQ sing 327 n n C4 C6 RMQ sing 328 n n C10 O6 RMQ doub 329 n n C10 N RMQ sing 330 n n N C7 RMQ sing 331 n n C6 C7 RMQ sing 332 n n C7 C8 RMQ sing 333 n n C8 C9 RMQ sing 334 n n O1 C9 RMQ doub 335 n n C9 O RMQ sing 336 n n C2 H1 RMQ sing 337 n n C3 H2 RMQ sing 338 n n C5 H3 RMQ sing 339 n n C6 H4 RMQ sing 340 n n C6 H5 RMQ sing 341 n n C7 H6 RMQ sing 342 n n C8 H7 RMQ sing 343 n n C8 H8 RMQ sing 344 n n C17 H9 RMQ sing 345 n n C17 H10 RMQ sing 346 n n C21 H11 RMQ sing 347 n n C21 H12 RMQ sing 348 n n C21 H13 RMQ sing 349 n n C22 H14 RMQ sing 350 n n C22 H15 RMQ sing 351 n n C22 H16 RMQ sing 352 n n C25 H17 RMQ sing 353 n n N4 H18 RMQ sing 354 n n C40 H19 RMQ sing 355 n n C39 H20 RMQ sing 356 n n C38 H21 RMQ sing 357 n n C37 H22 RMQ sing 358 n n C36 H23 RMQ sing 359 n n C26 H24 RMQ sing 360 n n C26 H25 RMQ sing 361 n n C32 H26 RMQ sing 362 n n C31 H27 RMQ sing 363 n n C30 H28 RMQ sing 364 n n C29 H29 RMQ sing 365 n n N3 H30 RMQ sing 366 n n C H31 RMQ sing 367 n n O H32 RMQ sing 368 n n N H33 RMQ sing 369 n n C11 H34 RMQ sing 370 n n C12 H35 RMQ sing 371 n n C14 H36 RMQ sing 372 n n C14 H37 RMQ sing 373 n n C14 H38 RMQ sing 374 n n C13 H39 RMQ sing 375 n n C13 H40 RMQ sing 376 n n C13 H41 RMQ sing 377 n n N1 H42 RMQ sing 378 n n C16 H43 RMQ sing 379 n n C16 H44 RMQ sing 380 n n C18 H45 RMQ sing 381 n n C18 H46 RMQ sing 382 n n N2 H47 RMQ sing 383 n n C23 H48 RMQ sing 384 n n C23 H49 RMQ sing 385 n n C23 H50 RMQ sing 386 n n # _atom_sites.entry_id 7AMG _atom_sites.fract_transf_matrix[1][1] 0.00606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RMQ A 1 500 500 RMQ LEO . F 2 RMQ D 1 500 500 RMQ LEO . G 3 HOH A 1 601 5 HOH HOH . G 3 HOH A 2 602 3 HOH HOH . G 3 HOH A 3 603 6 HOH HOH . G 3 HOH A 4 604 10 HOH HOH . H 3 HOH B 1 201 2 HOH HOH . I 3 HOH C 1 201 4 HOH HOH . I 3 HOH C 2 202 1 HOH HOH . I 3 HOH C 3 203 9 HOH HOH . I 3 HOH C 4 204 7 HOH HOH . I 3 HOH C 5 205 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 RMQ . . . E 2 -20.887 -20.673 4.192 1 95.54 ? C2 RMQ 500 A 1 HETATM 2 C C3 RMQ . . . E 2 -20.482 -20.658 5.534 1 94.92 ? C3 RMQ 500 A 1 HETATM 3 C C4 RMQ . . . E 2 -21.374 -20.887 6.575 1 94.06 ? C4 RMQ 500 A 1 HETATM 4 C C5 RMQ . . . E 2 -22.683 -21.129 6.25 1 96.28 ? C5 RMQ 500 A 1 HETATM 5 C C6 RMQ . . . E 2 -20.932 -20.88 8.013 1 101.91 ? C6 RMQ 500 A 1 HETATM 6 C C7 RMQ . . . E 2 -20.759 -22.335 8.481 1 112.98 ? C7 RMQ 500 A 1 HETATM 7 C C8 RMQ . . . E 2 -20.613 -22.368 10.004 1 117.09 ? C8 RMQ 500 A 1 HETATM 8 C C17 RMQ . . . E 2 -19.868 -29.316 5.894 1 121.16 ? C17 RMQ 500 A 1 HETATM 9 C C21 RMQ . . . E 2 -24.547 -26.074 1.835 1 101.6 ? C21 RMQ 500 A 1 HETATM 10 C C22 RMQ . . . E 2 -25.409 -27.446 3.735 1 100.79 ? C22 RMQ 500 A 1 HETATM 11 O O8 RMQ . . . E 2 -20.671 -21.457 1.555 1 98.51 ? O8 RMQ 500 A 1 HETATM 12 C C24 RMQ . . . E 2 -21.886 -21.335 1.488 1 97.26 ? C24 RMQ 500 A 1 HETATM 13 C C25 RMQ . . . E 2 -22.629 -21.463 0.166 1 92.95 ? C25 RMQ 500 A 1 HETATM 14 N N4 RMQ . . . E 2 -22.042 -20.681 -0.87 1 92.47 ? N4 RMQ 500 A 1 HETATM 15 C C33 RMQ . . . E 2 -22.219 -19.372 -0.927 1 105.28 ? C33 RMQ 500 A 1 HETATM 16 O O7 RMQ . . . E 2 -22.793 -18.704 -0.066 1 108.88 ? O7 RMQ 500 A 1 HETATM 17 C C34 RMQ . . . E 2 -21.723 -18.723 -2.195 1 108.94 ? C34 RMQ 500 A 1 HETATM 18 F F RMQ . . . E 2 -21.235 -19.611 -3.067 1 105.65 ? F RMQ 500 A 1 HETATM 19 F F1 RMQ . . . E 2 -22.764 -18.028 -2.673 1 138.87 ? F1 RMQ 500 A 1 HETATM 20 C C35 RMQ . . . E 2 -20.696 -17.679 -1.983 1 96.36 ? C35 RMQ 500 A 1 HETATM 21 C C40 RMQ . . . E 2 -20.704 -16.926 -0.839 1 90.84 ? C40 RMQ 500 A 1 HETATM 22 C C39 RMQ . . . E 2 -19.785 -15.922 -0.686 1 90.26 ? C39 RMQ 500 A 1 HETATM 23 C C38 RMQ . . . E 2 -18.865 -15.654 -1.671 1 89.36 ? C38 RMQ 500 A 1 HETATM 24 C C37 RMQ . . . E 2 -18.862 -16.408 -2.814 1 93.32 ? C37 RMQ 500 A 1 HETATM 25 C C36 RMQ . . . E 2 -19.778 -17.422 -2.982 1 92.82 ? C36 RMQ 500 A 1 HETATM 26 C C26 RMQ . . . E 2 -22.795 -22.889 -0.37 1 90.84 ? C26 RMQ 500 A 1 HETATM 27 C C27 RMQ . . . E 2 -24.264 -23.083 -0.581 1 105.33 ? C27 RMQ 500 A 1 HETATM 28 C C32 RMQ . . . E 2 -25.108 -23.201 0.515 1 120.23 ? C32 RMQ 500 A 1 HETATM 29 C C31 RMQ . . . E 2 -26.475 -23.353 0.332 1 121.38 ? C31 RMQ 500 A 1 HETATM 30 C C30 RMQ . . . E 2 -27.023 -23.391 -0.951 1 128.36 ? C30 RMQ 500 A 1 HETATM 31 C C29 RMQ . . . E 2 -26.24 -23.264 -2.083 1 119.39 ? C29 RMQ 500 A 1 HETATM 32 C C28 RMQ . . . E 2 -24.891 -23.113 -1.911 1 110.62 ? C28 RMQ 500 A 1 HETATM 33 CL CL RMQ . . . E 2 -23.961 -22.972 -3.368 1 109.07 ? CL RMQ 500 A 1 HETATM 34 N N3 RMQ . . . E 2 -22.654 -21.06 2.557 1 102.11 ? N3 RMQ 500 A 1 HETATM 35 C C1 RMQ . . . E 2 -22.205 -20.93 3.844 1 101.2 ? C1 RMQ 500 A 1 HETATM 36 C C RMQ . . . E 2 -23.089 -21.161 4.904 1 105.73 ? C RMQ 500 A 1 HETATM 37 C C9 RMQ . . . E 2 -19.386 -21.578 10.374 1 119.46 ? C9 RMQ 500 A 1 HETATM 38 O O1 RMQ . . . E 2 -18.318 -22.12 10.047 1 125.45 ? O1 RMQ 500 A 1 HETATM 39 O O RMQ . . . E 2 -19.476 -20.456 10.941 1 118.51 ? O RMQ 500 A 1 HETATM 40 N N RMQ . . . E 2 -19.646 -23.001 7.785 1 108.75 ? N RMQ 500 A 1 HETATM 41 C C10 RMQ . . . E 2 -19.789 -24.229 7.29 1 107.6 ? C10 RMQ 500 A 1 HETATM 42 O O6 RMQ . . . E 2 -20.784 -24.921 7.451 1 107.9 ? O6 RMQ 500 A 1 HETATM 43 C C11 RMQ . . . E 2 -18.7 -24.758 6.426 1 107.21 ? C11 RMQ 500 A 1 HETATM 44 C C12 RMQ . . . E 2 -19.117 -24.694 4.98 1 100.14 ? C12 RMQ 500 A 1 HETATM 45 C C14 RMQ . . . E 2 -19.654 -23.369 4.595 1 96.69 ? C14 RMQ 500 A 1 HETATM 46 C C13 RMQ . . . E 2 -17.922 -24.966 4.088 1 109.66 ? C13 RMQ 500 A 1 HETATM 47 N N1 RMQ . . . E 2 -18.525 -26.178 6.532 1 117.88 ? N1 RMQ 500 A 1 HETATM 48 C C15 RMQ . . . E 2 -17.388 -26.832 6.239 1 121.81 ? C15 RMQ 500 A 1 HETATM 49 O O5 RMQ . . . E 2 -16.235 -26.388 6.164 1 135.13 ? O5 RMQ 500 A 1 HETATM 50 C C16 RMQ . . . E 2 -17.707 -28.229 5.811 1 115.06 ? C16 RMQ 500 A 1 HETATM 51 O O2 RMQ . . . E 2 -19.093 -28.192 5.455 1 113.41 ? O2 RMQ 500 A 1 HETATM 52 C C18 RMQ . . . E 2 -21.314 -28.904 6.207 1 123.58 ? C18 RMQ 500 A 1 HETATM 53 N N2 RMQ . . . E 2 -21.899 -27.981 5.24 1 121.13 ? N2 RMQ 500 A 1 HETATM 54 C C19 RMQ . . . E 2 -22.511 -28.354 4.091 1 115.71 ? C19 RMQ 500 A 1 HETATM 55 O O4 RMQ . . . E 2 -22.619 -29.503 3.688 1 101.75 ? O4 RMQ 500 A 1 HETATM 56 O O3 RMQ . . . E 2 -23.074 -27.291 3.254 1 114.78 ? O3 RMQ 500 A 1 HETATM 57 C C20 RMQ . . . E 2 -24.364 -27.346 2.635 1 103.38 ? C20 RMQ 500 A 1 HETATM 58 C C23 RMQ . . . E 2 -24.424 -28.496 1.646 1 98.59 ? C23 RMQ 500 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 58 #