data_7AMG
#
_model_server_result.job_id            pMxRsPj5OQ0c80c-D7LxGw 
_model_server_result.datetime_utc      '2024-12-26 23:42:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7amg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    7AMG 
#
_exptl.entry_id    7AMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              830.314 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3~{R})-4-[4-[[(2~{S})-2-[[2,2-bis(fluoranyl)-2-phenyl-ethanoyl]amino]-3-(2-chlorophenyl)propanoyl]amino]phenyl]-3-[[(2~{S})-3-methyl-2-[2-[2-[(2-methylpropan-2-yl)oxycarbonylamino]ethoxy]ethanoylamino]butanoyl]amino]butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.54 
_cell.angle_gamma         90 
_cell.entry_id            7AMG 
_cell.length_a            165.006 
_cell.length_b            119.043 
_cell.length_c            54.29 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H 1 1 
C,D,F,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 71 1_555 A SG CYS 103 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf2 A SG CYS 58 A CYS 76 1_555 A SG CYS 105 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 A SG CYS 88 A CYS 106 1_555 C SG CYS 88 C CYS 106 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf4 B SG CYS 53 B CYS 71 1_555 B SG CYS 103 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf5 B SG CYS 58 B CYS 76 1_555 B SG CYS 105 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf6 B SG CYS 88 B CYS 106 1_555 D SG CYS 88 D CYS 106 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
disulf ? disulf7 C SG CYS 53 C CYS 71 1_555 C SG CYS 103 C CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf8 C SG CYS 58 C CYS 76 1_555 C SG CYS 105 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf9 D SG CYS 53 D CYS 71 1_555 D SG CYS 103 D CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf10 D SG CYS 58 D CYS 76 1_555 D SG CYS 105 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C41 H50 Cl F2 N5 O9' 
_chem_comp.formula_weight    830.314 
_chem_comp.id                RMQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3~{R})-4-[4-[[(2~{S})-2-[[2,2-bis(fluoranyl)-2-phenyl-ethanoyl]amino]-3-(2-chlorophenyl)propanoyl]amino]phenyl]-3-[[(2~{S})-3-methyl-2-[2-[2-[(2-methylpropan-2-yl)oxycarbonylamino]ethoxy]ethanoylamino]butanoyl]amino]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C28 RMQ sing 277 n n 
F C34 RMQ sing 278 n n 
C36 C37 RMQ doub 279 n y 
C36 C35 RMQ sing 280 n y 
C37 C38 RMQ sing 281 n y 
F1 C34 RMQ sing 282 n n 
C34 C35 RMQ sing 283 n n 
C34 C33 RMQ sing 284 n n 
C29 C28 RMQ doub 285 n y 
C29 C30 RMQ sing 286 n y 
C35 C40 RMQ doub 287 n y 
C28 C27 RMQ sing 288 n y 
C38 C39 RMQ doub 289 n y 
C30 C31 RMQ doub 290 n y 
C33 N4 RMQ sing 291 n n 
C33 O7 RMQ doub 292 n n 
N4 C25 RMQ sing 293 n n 
C40 C39 RMQ sing 294 n y 
C27 C26 RMQ sing 295 n n 
C27 C32 RMQ doub 296 n y 
C26 C25 RMQ sing 297 n n 
C25 C24 RMQ sing 298 n n 
C31 C32 RMQ sing 299 n y 
C24 O8 RMQ doub 300 n n 
C24 N3 RMQ sing 301 n n 
C23 C20 RMQ sing 302 n n 
C21 C20 RMQ sing 303 n n 
N3 C1 RMQ sing 304 n n 
C20 O3 RMQ sing 305 n n 
C20 C22 RMQ sing 306 n n 
O3 C19 RMQ sing 307 n n 
O4 C19 RMQ doub 308 n n 
C1 C2 RMQ doub 309 n y 
C1 C RMQ sing 310 n y 
C13 C12 RMQ sing 311 n n 
C19 N2 RMQ sing 312 n n 
C2 C3 RMQ sing 313 n y 
C14 C12 RMQ sing 314 n n 
C C5 RMQ doub 315 n y 
C12 C11 RMQ sing 316 n n 
N2 C18 RMQ sing 317 n n 
O2 C16 RMQ sing 318 n n 
O2 C17 RMQ sing 319 n n 
C3 C4 RMQ doub 320 n y 
C16 C15 RMQ sing 321 n n 
C17 C18 RMQ sing 322 n n 
O5 C15 RMQ doub 323 n n 
C15 N1 RMQ sing 324 n n 
C5 C4 RMQ sing 325 n y 
C11 N1 RMQ sing 326 n n 
C11 C10 RMQ sing 327 n n 
C4 C6 RMQ sing 328 n n 
C10 O6 RMQ doub 329 n n 
C10 N RMQ sing 330 n n 
N C7 RMQ sing 331 n n 
C6 C7 RMQ sing 332 n n 
C7 C8 RMQ sing 333 n n 
C8 C9 RMQ sing 334 n n 
O1 C9 RMQ doub 335 n n 
C9 O RMQ sing 336 n n 
C2 H1 RMQ sing 337 n n 
C3 H2 RMQ sing 338 n n 
C5 H3 RMQ sing 339 n n 
C6 H4 RMQ sing 340 n n 
C6 H5 RMQ sing 341 n n 
C7 H6 RMQ sing 342 n n 
C8 H7 RMQ sing 343 n n 
C8 H8 RMQ sing 344 n n 
C17 H9 RMQ sing 345 n n 
C17 H10 RMQ sing 346 n n 
C21 H11 RMQ sing 347 n n 
C21 H12 RMQ sing 348 n n 
C21 H13 RMQ sing 349 n n 
C22 H14 RMQ sing 350 n n 
C22 H15 RMQ sing 351 n n 
C22 H16 RMQ sing 352 n n 
C25 H17 RMQ sing 353 n n 
N4 H18 RMQ sing 354 n n 
C40 H19 RMQ sing 355 n n 
C39 H20 RMQ sing 356 n n 
C38 H21 RMQ sing 357 n n 
C37 H22 RMQ sing 358 n n 
C36 H23 RMQ sing 359 n n 
C26 H24 RMQ sing 360 n n 
C26 H25 RMQ sing 361 n n 
C32 H26 RMQ sing 362 n n 
C31 H27 RMQ sing 363 n n 
C30 H28 RMQ sing 364 n n 
C29 H29 RMQ sing 365 n n 
N3 H30 RMQ sing 366 n n 
C H31 RMQ sing 367 n n 
O H32 RMQ sing 368 n n 
N H33 RMQ sing 369 n n 
C11 H34 RMQ sing 370 n n 
C12 H35 RMQ sing 371 n n 
C14 H36 RMQ sing 372 n n 
C14 H37 RMQ sing 373 n n 
C14 H38 RMQ sing 374 n n 
C13 H39 RMQ sing 375 n n 
C13 H40 RMQ sing 376 n n 
C13 H41 RMQ sing 377 n n 
N1 H42 RMQ sing 378 n n 
C16 H43 RMQ sing 379 n n 
C16 H44 RMQ sing 380 n n 
C18 H45 RMQ sing 381 n n 
C18 H46 RMQ sing 382 n n 
N2 H47 RMQ sing 383 n n 
C23 H48 RMQ sing 384 n n 
C23 H49 RMQ sing 385 n n 
C23 H50 RMQ sing 386 n n 
#
_atom_sites.entry_id                     7AMG 
_atom_sites.fract_transf_matrix[1][1]    0.00606 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000057 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RMQ A 1 500 500 RMQ LEO . 
F 2 RMQ D 1 500 500 RMQ LEO . 
G 3 HOH A 1 601 5 HOH HOH . 
G 3 HOH A 2 602 3 HOH HOH . 
G 3 HOH A 3 603 6 HOH HOH . 
G 3 HOH A 4 604 10 HOH HOH . 
H 3 HOH B 1 201 2 HOH HOH . 
I 3 HOH C 1 201 4 HOH HOH . 
I 3 HOH C 2 202 1 HOH HOH . 
I 3 HOH C 3 203 9 HOH HOH . 
I 3 HOH C 4 204 7 HOH HOH . 
I 3 HOH C 5 205 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 RMQ . . . F 2 -42.655 9.548 22.695 1 94.03 ? C2 RMQ 500 D 1 
HETATM 2 C C3 RMQ . . . F 2 -42.989 8.358 23.315 1 93.08 ? C3 RMQ 500 D 1 
HETATM 3 C C4 RMQ . . . F 2 -44.045 8.29 24.207 1 94.14 ? C4 RMQ 500 D 1 
HETATM 4 C C5 RMQ . . . F 2 -44.717 9.441 24.483 1 93.82 ? C5 RMQ 500 D 1 
HETATM 5 C C6 RMQ . . . F 2 -44.442 7.012 24.905 1 103.09 ? C6 RMQ 500 D 1 
HETATM 6 C C7 RMQ . . . F 2 -45.858 6.531 24.593 1 104.55 ? C7 RMQ 500 D 1 
HETATM 7 C C8 RMQ . . . F 2 -46.28 5.623 25.742 1 116.39 ? C8 RMQ 500 D 1 
HETATM 8 C C17 RMQ . . . F 2 -49.278 6.827 16.87 1 109.74 ? C17 RMQ 500 D 1 
HETATM 9 C C21 RMQ . . . F 2 -50.24 13.319 18.9 1 113.99 ? C21 RMQ 500 D 1 
HETATM 10 C C22 RMQ . . . F 2 -47.769 13.266 19.279 1 99.14 ? C22 RMQ 500 D 1 
HETATM 11 O O8 RMQ . . . F 2 -42.044 10.969 20.534 1 96.41 ? O8 RMQ 500 D 1 
HETATM 12 C C24 RMQ . . . F 2 -42.483 11.954 21.133 1 97.59 ? C24 RMQ 500 D 1 
HETATM 13 C C25 RMQ . . . F 2 -42.194 13.337 20.597 1 100.42 ? C25 RMQ 500 D 1 
HETATM 14 N N4 RMQ . . . F 2 -40.832 13.439 20.102 1 100.22 ? N4 RMQ 500 D 1 
HETATM 15 C C33 RMQ . . . F 2 -39.834 13.958 20.821 1 109.17 ? C33 RMQ 500 D 1 
HETATM 16 O O7 RMQ . . . F 2 -39.932 14.288 21.983 1 94.73 ? O7 RMQ 500 D 1 
HETATM 17 C C34 RMQ . . . F 2 -38.539 14.199 20.099 1 122.02 ? C34 RMQ 500 D 1 
HETATM 18 F F RMQ . . . F 2 -38.708 13.858 18.829 1 133.88 ? F RMQ 500 D 1 
HETATM 19 F F1 RMQ . . . F 2 -38.319 15.498 20.173 1 142.09 ? F1 RMQ 500 D 1 
HETATM 20 C C35 RMQ . . . F 2 -37.342 13.483 20.685 1 119.72 ? C35 RMQ 500 D 1 
HETATM 21 C C40 RMQ . . . F 2 -37.449 12.233 21.267 1 105.8 ? C40 RMQ 500 D 1 
HETATM 22 C C39 RMQ . . . F 2 -36.319 11.6 21.784 1 105.42 ? C39 RMQ 500 D 1 
HETATM 23 C C38 RMQ . . . F 2 -35.071 12.205 21.729 1 113.85 ? C38 RMQ 500 D 1 
HETATM 24 C C37 RMQ . . . F 2 -34.947 13.457 21.146 1 118 ? C37 RMQ 500 D 1 
HETATM 25 C C36 RMQ . . . F 2 -36.076 14.081 20.633 1 126.54 ? C36 RMQ 500 D 1 
HETATM 26 C C26 RMQ . . . F 2 -43.17 13.819 19.502 1 105.36 ? C26 RMQ 500 D 1 
HETATM 27 C C27 RMQ . . . F 2 -43.664 15.193 19.891 1 108.99 ? C27 RMQ 500 D 1 
HETATM 28 C C32 RMQ . . . F 2 -44.476 15.265 21.014 1 121.47 ? C32 RMQ 500 D 1 
HETATM 29 C C31 RMQ . . . F 2 -44.936 16.486 21.452 1 118.53 ? C31 RMQ 500 D 1 
HETATM 30 C C30 RMQ . . . F 2 -44.596 17.647 20.78 1 126.5 ? C30 RMQ 500 D 1 
HETATM 31 C C29 RMQ . . . F 2 -43.784 17.653 19.655 1 115.09 ? C29 RMQ 500 D 1 
HETATM 32 C C28 RMQ . . . F 2 -43.307 16.464 19.184 1 106.64 ? C28 RMQ 500 D 1 
HETATM 33 CL CL RMQ . . . F 2 -42.254 16.653 17.768 1 127.58 ? CL RMQ 500 D 1 
HETATM 34 N N3 RMQ . . . F 2 -43.143 11.897 22.307 1 94.34 ? N3 RMQ 500 D 1 
HETATM 35 C C1 RMQ . . . F 2 -43.346 10.722 22.965 1 97.31 ? C1 RMQ 500 D 1 
HETATM 36 C C RMQ . . . F 2 -44.385 10.641 23.866 1 102.36 ? C RMQ 500 D 1 
HETATM 37 C C9 RMQ . . . F 2 -45.35 4.431 25.858 1 127 ? C9 RMQ 500 D 1 
HETATM 38 O O1 RMQ . . . F 2 -45.09 3.977 26.98 1 133.93 ? O1 RMQ 500 D 1 
HETATM 39 O O RMQ . . . F 2 -44.847 3.933 24.836 1 143.92 ? O RMQ 500 D 1 
HETATM 40 N N RMQ . . . F 2 -45.842 5.858 23.303 1 112.59 ? N RMQ 500 D 1 
HETATM 41 C C10 RMQ . . . F 2 -46.743 6.098 22.359 1 117.21 ? C10 RMQ 500 D 1 
HETATM 42 O O6 RMQ . . . F 2 -47.807 6.641 22.593 1 130.74 ? O6 RMQ 500 D 1 
HETATM 43 C C11 RMQ . . . F 2 -46.314 5.835 20.94 1 116.18 ? C11 RMQ 500 D 1 
HETATM 44 C C12 RMQ . . . F 2 -45.919 7.164 20.279 1 101.52 ? C12 RMQ 500 D 1 
HETATM 45 C C14 RMQ . . . F 2 -45.041 8.062 21.123 1 99.52 ? C14 RMQ 500 D 1 
HETATM 46 C C13 RMQ . . . F 2 -45.191 6.924 18.965 1 108.83 ? C13 RMQ 500 D 1 
HETATM 47 N N1 RMQ . . . F 2 -47.34 5.384 20.033 1 130 ? N1 RMQ 500 D 1 
HETATM 48 C C15 RMQ . . . F 2 -47.105 4.61 18.973 1 128.71 ? C15 RMQ 500 D 1 
HETATM 49 O O5 RMQ . . . F 2 -46.168 3.83 18.828 1 134.46 ? O5 RMQ 500 D 1 
HETATM 50 C C16 RMQ . . . F 2 -48.033 4.936 17.827 1 123.03 ? C16 RMQ 500 D 1 
HETATM 51 O O2 RMQ . . . F 2 -48.322 6.357 17.833 1 120.43 ? O2 RMQ 500 D 1 
HETATM 52 C C18 RMQ . . . F 2 -50.157 7.925 17.47 1 103.24 ? C18 RMQ 500 D 1 
HETATM 53 N N2 RMQ . . . F 2 -49.365 9.06 17.896 1 105.02 ? N2 RMQ 500 D 1 
HETATM 54 C C19 RMQ . . . F 2 -49.827 10.316 17.9 1 121.63 ? C19 RMQ 500 D 1 
HETATM 55 O O4 RMQ . . . F 2 -50.978 10.589 17.61 1 125.71 ? O4 RMQ 500 D 1 
HETATM 56 O O3 RMQ . . . F 2 -48.894 11.416 18.196 1 135.2 ? O3 RMQ 500 D 1 
HETATM 57 C C20 RMQ . . . F 2 -49.046 12.423 19.212 1 115.47 ? C20 RMQ 500 D 1 
HETATM 58 C C23 RMQ . . . F 2 -49.282 11.717 20.536 1 117.48 ? C23 RMQ 500 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           58 
#