data_7ANA # _model_server_result.job_id 0wl-Z3oyqXDHdYvlfo8rXw _model_server_result.datetime_utc '2024-11-21 18:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ana # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7ANA # _exptl.entry_id 7ANA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ANA _cell.length_a 83.246 _cell.length_b 83.246 _cell.length_c 390.341 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ANA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 AAA ASP 35 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A OD1 ASP 39 AAA ASP 36 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A OG SER 78 AAA SER 75 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc4 A OD1 ASP 331 AAA ASP 328 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 A OD2 ASP 331 AAA ASP 328 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 A OD1 ASN 332 AAA ASN 329 1_555 D CA CA . AAA CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc7 B OD1 ASP 38 BBB ASP 35 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 B OD1 ASP 39 BBB ASP 36 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc9 B OG SER 78 BBB SER 75 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 B OD1 ASP 331 BBB ASP 328 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc11 B OD2 ASP 331 BBB ASP 328 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc12 B OD1 ASN 332 BBB ASN 329 1_555 H CA CA . BBB CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NGA _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-galactosamine;2-acetamido-2-deoxy-beta-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-D-GALACTOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NGA sing 276 n n C1 O1 NGA sing 277 n n C1 O5 NGA sing 278 n n C1 H1 NGA sing 279 n n C2 C3 NGA sing 280 n n C2 N2 NGA sing 281 n n C2 H2 NGA sing 282 n n C3 C4 NGA sing 283 n n C3 O3 NGA sing 284 n n C3 H3 NGA sing 285 n n C4 C5 NGA sing 286 n n C4 O4 NGA sing 287 n n C4 H4 NGA sing 288 n n C5 C6 NGA sing 289 n n C5 O5 NGA sing 290 n n C5 H5 NGA sing 291 n n C6 O6 NGA sing 292 n n C6 H61 NGA sing 293 n n C6 H62 NGA sing 294 n n C7 C8 NGA sing 295 n n C7 N2 NGA sing 296 n n C7 O7 NGA doub 297 n n C8 H81 NGA sing 298 n n C8 H82 NGA sing 299 n n C8 H83 NGA sing 300 n n N2 HN2 NGA sing 301 n n O1 HO1 NGA sing 302 n n O3 HO3 NGA sing 303 n n O4 HO4 NGA sing 304 n n O6 HO6 NGA sing 305 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NGA DGalpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NGA N-acetyl-b-D-galactopyranosamine 'COMMON NAME' GMML 1 NGA b-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NGA GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7ANA _atom_sites.fract_transf_matrix[1][1] 0.012013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A2G AAA 1 701 701 A2G NG1 . D 3 CA AAA 1 702 1 CA CA . E 4 NGA BBB 1 601 601 NGA NGA . F 5 EDO BBB 1 602 601 EDO EDO . G 2 A2G BBB 1 603 701 A2G NG1 . H 3 CA BBB 1 604 2 CA CA . I 6 HOH AAA 1 801 140 HOH HOH . I 6 HOH AAA 2 802 90 HOH HOH . I 6 HOH AAA 3 803 106 HOH HOH . I 6 HOH AAA 4 804 135 HOH HOH . I 6 HOH AAA 5 805 75 HOH HOH . I 6 HOH AAA 6 806 170 HOH HOH . I 6 HOH AAA 7 807 100 HOH HOH . I 6 HOH AAA 8 808 61 HOH HOH . I 6 HOH AAA 9 809 130 HOH HOH . I 6 HOH AAA 10 810 83 HOH HOH . I 6 HOH AAA 11 811 51 HOH HOH . I 6 HOH AAA 12 812 153 HOH HOH . I 6 HOH AAA 13 813 95 HOH HOH . I 6 HOH AAA 14 814 94 HOH HOH . I 6 HOH AAA 15 815 34 HOH HOH . I 6 HOH AAA 16 816 168 HOH HOH . I 6 HOH AAA 17 817 9 HOH HOH . I 6 HOH AAA 18 818 157 HOH HOH . I 6 HOH AAA 19 819 123 HOH HOH . I 6 HOH AAA 20 820 40 HOH HOH . I 6 HOH AAA 21 821 169 HOH HOH . I 6 HOH AAA 22 822 171 HOH HOH . I 6 HOH AAA 23 823 167 HOH HOH . I 6 HOH AAA 24 824 67 HOH HOH . I 6 HOH AAA 25 825 150 HOH HOH . I 6 HOH AAA 26 826 53 HOH HOH . I 6 HOH AAA 27 827 70 HOH HOH . I 6 HOH AAA 28 828 132 HOH HOH . I 6 HOH AAA 29 829 99 HOH HOH . I 6 HOH AAA 30 830 64 HOH HOH . I 6 HOH AAA 31 831 121 HOH HOH . I 6 HOH AAA 32 832 7 HOH HOH . I 6 HOH AAA 33 833 4 HOH HOH . I 6 HOH AAA 34 834 25 HOH HOH . I 6 HOH AAA 35 835 3 HOH HOH . I 6 HOH AAA 36 836 8 HOH HOH . I 6 HOH AAA 37 837 116 HOH HOH . I 6 HOH AAA 38 838 69 HOH HOH . I 6 HOH AAA 39 839 10 HOH HOH . I 6 HOH AAA 40 840 111 HOH HOH . I 6 HOH AAA 41 841 88 HOH HOH . I 6 HOH AAA 42 842 105 HOH HOH . I 6 HOH AAA 43 843 126 HOH HOH . I 6 HOH AAA 44 844 36 HOH HOH . I 6 HOH AAA 45 845 142 HOH HOH . I 6 HOH AAA 46 846 72 HOH HOH . I 6 HOH AAA 47 847 114 HOH HOH . I 6 HOH AAA 48 848 108 HOH HOH . I 6 HOH AAA 49 849 152 HOH HOH . I 6 HOH AAA 50 850 101 HOH HOH . I 6 HOH AAA 51 851 63 HOH HOH . I 6 HOH AAA 52 852 163 HOH HOH . J 6 HOH BBB 1 701 81 HOH HOH . J 6 HOH BBB 2 702 122 HOH HOH . J 6 HOH BBB 3 703 82 HOH HOH . J 6 HOH BBB 4 704 50 HOH HOH . J 6 HOH BBB 5 705 32 HOH HOH . J 6 HOH BBB 6 706 26 HOH HOH . J 6 HOH BBB 7 707 65 HOH HOH . J 6 HOH BBB 8 708 37 HOH HOH . J 6 HOH BBB 9 709 103 HOH HOH . J 6 HOH BBB 10 710 45 HOH HOH . J 6 HOH BBB 11 711 127 HOH HOH . J 6 HOH BBB 12 712 43 HOH HOH . J 6 HOH BBB 13 713 138 HOH HOH . J 6 HOH BBB 14 714 128 HOH HOH . J 6 HOH BBB 15 715 11 HOH HOH . J 6 HOH BBB 16 716 77 HOH HOH . J 6 HOH BBB 17 717 85 HOH HOH . J 6 HOH BBB 18 718 74 HOH HOH . J 6 HOH BBB 19 719 87 HOH HOH . J 6 HOH BBB 20 720 155 HOH HOH . J 6 HOH BBB 21 721 151 HOH HOH . J 6 HOH BBB 22 722 146 HOH HOH . J 6 HOH BBB 23 723 58 HOH HOH . J 6 HOH BBB 24 724 28 HOH HOH . J 6 HOH BBB 25 725 78 HOH HOH . J 6 HOH BBB 26 726 66 HOH HOH . J 6 HOH BBB 27 727 33 HOH HOH . J 6 HOH BBB 28 728 60 HOH HOH . J 6 HOH BBB 29 729 21 HOH HOH . J 6 HOH BBB 30 730 109 HOH HOH . J 6 HOH BBB 31 731 31 HOH HOH . J 6 HOH BBB 32 732 48 HOH HOH . J 6 HOH BBB 33 733 104 HOH HOH . J 6 HOH BBB 34 734 125 HOH HOH . J 6 HOH BBB 35 735 52 HOH HOH . J 6 HOH BBB 36 736 131 HOH HOH . J 6 HOH BBB 37 737 102 HOH HOH . J 6 HOH BBB 38 738 97 HOH HOH . J 6 HOH BBB 39 739 12 HOH HOH . J 6 HOH BBB 40 740 14 HOH HOH . J 6 HOH BBB 41 741 6 HOH HOH . J 6 HOH BBB 42 742 92 HOH HOH . J 6 HOH BBB 43 743 148 HOH HOH . J 6 HOH BBB 44 744 46 HOH HOH . J 6 HOH BBB 45 745 154 HOH HOH . J 6 HOH BBB 46 746 19 HOH HOH . J 6 HOH BBB 47 747 107 HOH HOH . J 6 HOH BBB 48 748 38 HOH HOH . J 6 HOH BBB 49 749 149 HOH HOH . J 6 HOH BBB 50 750 29 HOH HOH . J 6 HOH BBB 51 751 55 HOH HOH . J 6 HOH BBB 52 752 47 HOH HOH . J 6 HOH BBB 53 753 2 HOH HOH . J 6 HOH BBB 54 754 84 HOH HOH . J 6 HOH BBB 55 755 80 HOH HOH . J 6 HOH BBB 56 756 93 HOH HOH . J 6 HOH BBB 57 757 5 HOH HOH . J 6 HOH BBB 58 758 54 HOH HOH . J 6 HOH BBB 59 759 117 HOH HOH . J 6 HOH BBB 60 760 112 HOH HOH . J 6 HOH BBB 61 761 68 HOH HOH . J 6 HOH BBB 62 762 166 HOH HOH . J 6 HOH BBB 63 763 134 HOH HOH . J 6 HOH BBB 64 764 158 HOH HOH . J 6 HOH BBB 65 765 42 HOH HOH . J 6 HOH BBB 66 766 76 HOH HOH . J 6 HOH BBB 67 767 16 HOH HOH . J 6 HOH BBB 68 768 24 HOH HOH . J 6 HOH BBB 69 769 120 HOH HOH . J 6 HOH BBB 70 770 118 HOH HOH . J 6 HOH BBB 71 771 35 HOH HOH . J 6 HOH BBB 72 772 156 HOH HOH . J 6 HOH BBB 73 773 23 HOH HOH . J 6 HOH BBB 74 774 79 HOH HOH . J 6 HOH BBB 75 775 30 HOH HOH . J 6 HOH BBB 76 776 41 HOH HOH . J 6 HOH BBB 77 777 147 HOH HOH . J 6 HOH BBB 78 778 141 HOH HOH . J 6 HOH BBB 79 779 91 HOH HOH . J 6 HOH BBB 80 780 13 HOH HOH . J 6 HOH BBB 81 781 129 HOH HOH . J 6 HOH BBB 82 782 119 HOH HOH . J 6 HOH BBB 83 783 143 HOH HOH . J 6 HOH BBB 84 784 137 HOH HOH . J 6 HOH BBB 85 785 73 HOH HOH . J 6 HOH BBB 86 786 44 HOH HOH . J 6 HOH BBB 87 787 98 HOH HOH . J 6 HOH BBB 88 788 124 HOH HOH . J 6 HOH BBB 89 789 27 HOH HOH . J 6 HOH BBB 90 790 57 HOH HOH . J 6 HOH BBB 91 791 144 HOH HOH . J 6 HOH BBB 92 792 145 HOH HOH . J 6 HOH BBB 93 793 39 HOH HOH . J 6 HOH BBB 94 794 22 HOH HOH . J 6 HOH BBB 95 795 89 HOH HOH . J 6 HOH BBB 96 796 139 HOH HOH . J 6 HOH BBB 97 797 115 HOH HOH . J 6 HOH BBB 98 798 71 HOH HOH . J 6 HOH BBB 99 799 110 HOH HOH . J 6 HOH BBB 100 800 62 HOH HOH . J 6 HOH BBB 101 801 59 HOH HOH . J 6 HOH BBB 102 802 133 HOH HOH . J 6 HOH BBB 103 803 15 HOH HOH . J 6 HOH BBB 104 804 160 HOH HOH . J 6 HOH BBB 105 805 20 HOH HOH . J 6 HOH BBB 106 806 164 HOH HOH . J 6 HOH BBB 107 807 96 HOH HOH . J 6 HOH BBB 108 808 136 HOH HOH . J 6 HOH BBB 109 809 18 HOH HOH . J 6 HOH BBB 110 810 161 HOH HOH . J 6 HOH BBB 111 811 1 HOH HOH . J 6 HOH BBB 112 812 159 HOH HOH . J 6 HOH BBB 113 813 162 HOH HOH . J 6 HOH BBB 114 814 86 HOH HOH . J 6 HOH BBB 115 815 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NGA . . . E 4 -22.753 -31.77 -10.568 1 63.61 0 C1 NGA 601 BBB 1 HETATM 2 C C2 NGA . . . E 4 -23.025 -32.809 -11.65 1 64.14 0 C2 NGA 601 BBB 1 HETATM 3 C C3 NGA . . . E 4 -21.942 -32.677 -12.714 1 63.57 0 C3 NGA 601 BBB 1 HETATM 4 C C4 NGA . . . E 4 -22.017 -31.277 -13.324 1 64.02 0 C4 NGA 601 BBB 1 HETATM 5 C C5 NGA . . . E 4 -21.783 -30.239 -12.214 1 64.33 0 C5 NGA 601 BBB 1 HETATM 6 C C6 NGA . . . E 4 -21.907 -28.801 -12.74 1 65.67 0 C6 NGA 601 BBB 1 HETATM 7 C C7 NGA . . . E 4 -23.999 -34.996 -10.972 1 62.52 0 C7 NGA 601 BBB 1 HETATM 8 C C8 NGA . . . E 4 -25.366 -34.665 -11.495 1 63.27 0 C8 NGA 601 BBB 1 HETATM 9 N N2 NGA . . . E 4 -22.989 -34.135 -11.073 1 62.66 0 N2 NGA 601 BBB 1 HETATM 10 O O1 NGA . . . E 4 -23.827 -31.846 -9.634 1 66.06 0 O1 NGA 601 BBB 1 HETATM 11 O O3 NGA . . . E 4 -22.082 -33.692 -13.695 1 63.53 0 O3 NGA 601 BBB 1 HETATM 12 O O4 NGA . . . E 4 -23.287 -31.093 -13.949 1 63.43 0 O4 NGA 601 BBB 1 HETATM 13 O O5 NGA . . . E 4 -22.694 -30.447 -11.111 1 64.51 0 O5 NGA 601 BBB 1 HETATM 14 O O6 NGA . . . E 4 -21.216 -27.879 -11.88 1 66.34 0 O6 NGA 601 BBB 1 HETATM 15 O O7 NGA . . . E 4 -23.771 -36.052 -10.411 1 64.59 0 O7 NGA 601 BBB 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #