data_7ANJ
#
_model_server_result.job_id            yIWXobCsp-qySkDxLR7Hig 
_model_server_result.datetime_utc      '2024-10-19 08:36:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7anj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7ANJ 
#
_exptl.entry_id    7ANJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              605.341 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.79 
_cell.angle_gamma         90 
_cell.entry_id            7ANJ 
_cell.length_a            48.001 
_cell.length_b            67.81 
_cell.length_c            53.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ANJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C16 H25 N5 O16 P2' 
_chem_comp.formula_weight    605.341 
_chem_comp.id                GDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C2 GDD sing 83 n n 
N2 H2N1 GDD sing 84 n n 
N2 H2N2 GDD sing 85 n n 
C2 N1 GDD sing 86 n n 
C2 N3 GDD doub 87 n n 
N1 C6 GDD sing 88 n n 
N1 H1 GDD sing 89 n n 
N3 C4 GDD sing 90 n n 
C4 C5 GDD doub 91 n y 
C4 N9 GDD sing 92 n y 
C5 C6 GDD sing 93 n n 
C5 N7 GDD sing 94 n y 
C6 O6 GDD doub 95 n n 
N7 C8 GDD doub 96 n y 
C8 N9 GDD sing 97 n y 
C8 H8 GDD sing 98 n n 
N9 C1' GDD sing 99 n n 
C1' C2' GDD sing 100 n n 
C1' O4' GDD sing 101 n n 
C1' H1' GDD sing 102 n n 
C2' O2' GDD sing 103 n n 
C2' C3' GDD sing 104 n n 
C2' H2' GDD sing 105 n n 
O2' HA GDD sing 106 n n 
C3' O3' GDD sing 107 n n 
C3' C4' GDD sing 108 n n 
C3' H3' GDD sing 109 n n 
O3' HB GDD sing 110 n n 
C4' O4' GDD sing 111 n n 
C4' C5' GDD sing 112 n n 
C4' H4' GDD sing 113 n n 
C5' O5' GDD sing 114 n n 
C5' "H5'1" GDD sing 115 n n 
C5' "H5'2" GDD sing 116 n n 
O5' PA GDD sing 117 n n 
PA O1A GDD doub 118 n n 
PA O2A GDD sing 119 n n 
PA O3A GDD sing 120 n n 
O2A HO2A GDD sing 121 n n 
O3A PB GDD sing 122 n n 
PB O2B GDD sing 123 n n 
PB O3B GDD doub 124 n n 
PB O1B GDD sing 125 n n 
O2B HO2B GDD sing 126 n n 
O1B C11 GDD sing 127 n n 
C11 O51 GDD sing 128 n n 
C11 C21 GDD sing 129 n n 
C11 H11 GDD sing 130 n n 
O51 C51 GDD sing 131 n n 
C51 C61 GDD sing 132 n n 
C51 C41 GDD sing 133 n n 
C51 H51 GDD sing 134 n n 
C61 O6A GDD sing 135 n n 
C61 H611 GDD sing 136 n n 
C61 H612 GDD sing 137 n n 
O6A H6A GDD sing 138 n n 
C21 O21 GDD sing 139 n n 
C21 C31 GDD sing 140 n n 
C21 H21 GDD sing 141 n n 
O21 HC GDD sing 142 n n 
C31 O31 GDD sing 143 n n 
C31 C41 GDD sing 144 n n 
C31 H31 GDD sing 145 n n 
O31 HD GDD sing 146 n n 
C41 O41 GDD sing 147 n n 
C41 H41 GDD sing 148 n n 
O41 HE GDD sing 149 n n 
#
_atom_sites.entry_id                     7ANJ 
_atom_sites.fract_transf_matrix[1][1]    0.020833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000651 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDD A 1 201 1 GDD GDD . 
D 3 GDP A 1 202 1 GDP GDP . 
E 4 HOH A 1 301 37 HOH HOH . 
E 4 HOH A 2 302 45 HOH HOH . 
E 4 HOH A 3 303 49 HOH HOH . 
E 4 HOH A 4 304 19 HOH HOH . 
E 4 HOH A 5 305 12 HOH HOH . 
E 4 HOH A 6 306 13 HOH HOH . 
E 4 HOH A 7 307 21 HOH HOH . 
E 4 HOH A 8 308 26 HOH HOH . 
E 4 HOH A 9 309 36 HOH HOH . 
E 4 HOH A 10 310 38 HOH HOH . 
E 4 HOH A 11 311 7 HOH HOH . 
E 4 HOH A 12 312 31 HOH HOH . 
E 4 HOH A 13 313 29 HOH HOH . 
E 4 HOH A 14 314 47 HOH HOH . 
E 4 HOH A 15 315 23 HOH HOH . 
E 4 HOH A 16 316 6 HOH HOH . 
E 4 HOH A 17 317 3 HOH HOH . 
E 4 HOH A 18 318 25 HOH HOH . 
E 4 HOH A 19 319 24 HOH HOH . 
E 4 HOH A 20 320 30 HOH HOH . 
E 4 HOH A 21 321 11 HOH HOH . 
E 4 HOH A 22 322 44 HOH HOH . 
E 4 HOH A 23 323 14 HOH HOH . 
E 4 HOH A 24 324 8 HOH HOH . 
E 4 HOH A 25 325 46 HOH HOH . 
E 4 HOH A 26 326 5 HOH HOH . 
E 4 HOH A 27 327 27 HOH HOH . 
E 4 HOH A 28 328 28 HOH HOH . 
E 4 HOH A 29 329 39 HOH HOH . 
F 4 HOH B 1 201 34 HOH HOH . 
F 4 HOH B 2 202 42 HOH HOH . 
F 4 HOH B 3 203 10 HOH HOH . 
F 4 HOH B 4 204 43 HOH HOH . 
F 4 HOH B 5 205 1 HOH HOH . 
F 4 HOH B 6 206 16 HOH HOH . 
F 4 HOH B 7 207 22 HOH HOH . 
F 4 HOH B 8 208 9 HOH HOH . 
F 4 HOH B 9 209 40 HOH HOH . 
F 4 HOH B 10 210 20 HOH HOH . 
F 4 HOH B 11 211 35 HOH HOH . 
F 4 HOH B 12 212 41 HOH HOH . 
F 4 HOH B 13 213 4 HOH HOH . 
F 4 HOH B 14 214 2 HOH HOH . 
F 4 HOH B 15 215 17 HOH HOH . 
F 4 HOH B 16 216 48 HOH HOH . 
F 4 HOH B 17 217 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GDD . . . C 2 -17.302 -3.965 -26.579 1 25.34 ? N2 GDD 201 A 1 
HETATM 2 C C2 GDD . . . C 2 -16.237 -3.372 -25.979 1 36 ? C2 GDD 201 A 1 
HETATM 3 N N1 GDD . . . C 2 -15.105 -3.136 -26.691 1 21.43 ? N1 GDD 201 A 1 
HETATM 4 N N3 GDD . . . C 2 -16.355 -3.033 -24.667 1 29.72 ? N3 GDD 201 A 1 
HETATM 5 C C4 GDD . . . C 2 -15.332 -2.436 -24.001 1 30.9 ? C4 GDD 201 A 1 
HETATM 6 C C5 GDD . . . C 2 -14.079 -2.156 -24.716 1 23.94 ? C5 GDD 201 A 1 
HETATM 7 C C6 GDD . . . C 2 -14.019 -2.55 -26.144 1 37.43 ? C6 GDD 201 A 1 
HETATM 8 O O6 GDD . . . C 2 -12.981 -2.343 -26.81 1 22.1 ? O6 GDD 201 A 1 
HETATM 9 N N7 GDD . . . C 2 -13.254 -1.569 -23.833 1 31.74 ? N7 GDD 201 A 1 
HETATM 10 C C8 GDD . . . C 2 -13.917 -1.474 -22.652 1 32.51 ? C8 GDD 201 A 1 
HETATM 11 N N9 GDD . . . C 2 -15.156 -1.999 -22.756 1 43.76 ? N9 GDD 201 A 1 
HETATM 12 C C1' GDD . . . C 2 -16.198 -2.085 -21.7 1 56.97 ? C1' GDD 201 A 1 
HETATM 13 C C2' GDD . . . C 2 -15.693 -2.578 -20.351 1 59.71 ? C2' GDD 201 A 1 
HETATM 14 O O2' GDD . . . C 2 -15.762 -4.004 -20.264 1 35.31 ? O2' GDD 201 A 1 
HETATM 15 C C3' GDD . . . C 2 -16.608 -1.883 -19.362 1 52.82 ? C3' GDD 201 A 1 
HETATM 16 O O3' GDD . . . C 2 -17.707 -2.718 -18.982 1 49.7 ? O3' GDD 201 A 1 
HETATM 17 C C4' GDD . . . C 2 -17.124 -0.65 -20.096 1 77.2 ? C4' GDD 201 A 1 
HETATM 18 O O4' GDD . . . C 2 -16.754 -0.79 -21.471 1 57.93 ? O4' GDD 201 A 1 
HETATM 19 C C5' GDD . . . C 2 -16.552 0.647 -19.538 1 53.37 ? C5' GDD 201 A 1 
HETATM 20 O O5' GDD . . . C 2 -15.151 0.701 -19.791 1 55.11 ? O5' GDD 201 A 1 
HETATM 21 P PA GDD . . . C 2 -14.181 1.609 -18.884 1 47.46 ? PA GDD 201 A 1 
HETATM 22 O O1A GDD . . . C 2 -14.88 2.913 -18.556 1 31.17 ? O1A GDD 201 A 1 
HETATM 23 O O2A GDD . . . C 2 -12.831 1.625 -19.56 1 44.77 ? O2A GDD 201 A 1 
HETATM 24 O O3A GDD . . . C 2 -14.097 0.713 -17.545 1 61.11 ? O3A GDD 201 A 1 
HETATM 25 P PB GDD . . . C 2 -13.19 1.126 -16.275 1 92.94 ? PB GDD 201 A 1 
HETATM 26 O O2B GDD . . . C 2 -13.462 0.124 -15.179 1 64.3 ? O2B GDD 201 A 1 
HETATM 27 O O3B GDD . . . C 2 -11.768 1.328 -16.745 1 44.25 ? O3B GDD 201 A 1 
HETATM 28 O O1B GDD . . . C 2 -13.8 2.545 -15.796 1 35.8 ? O1B GDD 201 A 1 
HETATM 29 C C11 GDD . . . C 2 -13.06 3.403 -14.918 1 73.52 ? C11 GDD 201 A 1 
HETATM 30 O O51 GDD . . . C 2 -12.728 4.643 -15.567 1 57.36 ? O51 GDD 201 A 1 
HETATM 31 C C51 GDD . . . C 2 -13.826 5.522 -15.848 1 87.58 ? C51 GDD 201 A 1 
HETATM 32 C C61 GDD . . . C 2 -13.312 6.758 -16.584 1 46.95 ? C61 GDD 201 A 1 
HETATM 33 O O6A GDD . . . C 2 -12.556 6.357 -17.737 1 26.58 ? O6A GDD 201 A 1 
HETATM 34 C C21 GDD . . . C 2 -13.821 3.686 -13.625 1 57.14 ? C21 GDD 201 A 1 
HETATM 35 O O21 GDD . . . C 2 -12.898 4.262 -12.696 1 34.06 ? O21 GDD 201 A 1 
HETATM 36 C C31 GDD . . . C 2 -14.997 4.639 -13.822 1 106.28 ? C31 GDD 201 A 1 
HETATM 37 O O31 GDD . . . C 2 -15.575 4.957 -12.545 1 27.99 ? O31 GDD 201 A 1 
HETATM 38 C C41 GDD . . . C 2 -14.538 5.9 -14.551 1 60.61 ? C41 GDD 201 A 1 
HETATM 39 O O41 GDD . . . C 2 -15.663 6.736 -14.836 1 54.09 ? O41 GDD 201 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#