data_7API # _model_server_result.job_id X0q_FNaPejaDU_QTgrV_wg _model_server_result.datetime_utc '2024-10-13 16:31:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7api # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":395}' # _entry.id 7API # _exptl.entry_id 7API _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7API _cell.length_a 120.5 _cell.length_b 120.5 _cell.length_c 113.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7API _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN MAN C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 MAN MAN C1 O1 . O3 HO3 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG ? 501 NAG 3 n C NAG 2 C 2 NAG ? 502 NAG 3 n C MAN 3 C 3 MAN ? 503 MAN 3 n C MAN 4 C 4 MAN ? 504 MAN 3 n C NAG 5 C 5 NAG ? 505 NAG 3 n C MAN 6 C 6 MAN ? 506 MAN 4 n D NAG 1 D 1 NAG ? 510 NAG 4 n D NAG 2 D 2 NAG ? 511 NAG 4 n E NAG 1 E 1 NAG ? 520 NAG 4 n E NAG 2 E 2 NAG ? 521 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 221 A CYS 232 1_555 F SG CYS . A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 35 A ASN 46 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 A ND2 ASN 72 A ASN 83 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale3 A ND2 ASN 236 A ASN 247 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C O6 MAN . C MAN 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale7 C O3 MAN . C MAN 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 70 n n N H CYS sing 71 n n N H2 CYS sing 72 n n CA C CYS sing 73 n n CA CB CYS sing 74 n n CA HA CYS sing 75 n n C O CYS doub 76 n n C OXT CYS sing 77 n n CB SG CYS sing 78 n n CB HB2 CYS sing 79 n n CB HB3 CYS sing 80 n n SG HG CYS sing 81 n n OXT HXT CYS sing 82 n n # _atom_sites.entry_id 7API _atom_sites.fract_transf_matrix[1][1] 0.008299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CYS A 1 395 395 CYS CYS . G 6 HOH A 1 600 600 HOH HOH . G 6 HOH A 2 602 602 HOH HOH . G 6 HOH A 3 603 603 HOH HOH . G 6 HOH A 4 604 604 HOH HOH . G 6 HOH A 5 605 605 HOH HOH . G 6 HOH A 6 607 607 HOH HOH . G 6 HOH A 7 608 608 HOH HOH . G 6 HOH A 8 609 609 HOH HOH . G 6 HOH A 9 611 611 HOH HOH . G 6 HOH A 10 612 612 HOH HOH . G 6 HOH A 11 613 613 HOH HOH . G 6 HOH A 12 614 614 HOH HOH . G 6 HOH A 13 615 615 HOH HOH . G 6 HOH A 14 616 616 HOH HOH . G 6 HOH A 15 617 617 HOH HOH . G 6 HOH A 16 618 618 HOH HOH . G 6 HOH A 17 619 619 HOH HOH . G 6 HOH A 18 620 620 HOH HOH . G 6 HOH A 19 621 621 HOH HOH . G 6 HOH A 20 622 622 HOH HOH . G 6 HOH A 21 632 632 HOH HOH . G 6 HOH A 22 635 635 HOH HOH . G 6 HOH A 23 636 636 HOH HOH . G 6 HOH A 24 637 637 HOH HOH . G 6 HOH A 25 639 639 HOH HOH . G 6 HOH A 26 640 640 HOH HOH . G 6 HOH A 27 644 644 HOH HOH . G 6 HOH A 28 646 646 HOH HOH . G 6 HOH A 29 647 647 HOH HOH . G 6 HOH A 30 648 648 HOH HOH . G 6 HOH A 31 649 649 HOH HOH . G 6 HOH A 32 650 650 HOH HOH . G 6 HOH A 33 651 651 HOH HOH . G 6 HOH A 34 652 652 HOH HOH . G 6 HOH A 35 653 653 HOH HOH . G 6 HOH A 36 654 654 HOH HOH . G 6 HOH A 37 656 656 HOH HOH . G 6 HOH A 38 658 658 HOH HOH . G 6 HOH A 39 659 659 HOH HOH . G 6 HOH A 40 660 660 HOH HOH . G 6 HOH A 41 661 661 HOH HOH . G 6 HOH A 42 662 662 HOH HOH . G 6 HOH A 43 663 663 HOH HOH . G 6 HOH A 44 664 664 HOH HOH . G 6 HOH A 45 665 665 HOH HOH . G 6 HOH A 46 666 666 HOH HOH . G 6 HOH A 47 667 667 HOH HOH . G 6 HOH A 48 668 668 HOH HOH . G 6 HOH A 49 669 669 HOH HOH . G 6 HOH A 50 670 670 HOH HOH . G 6 HOH A 51 671 671 HOH HOH . G 6 HOH A 52 672 672 HOH HOH . G 6 HOH A 53 674 674 HOH HOH . G 6 HOH A 54 675 675 HOH HOH . G 6 HOH A 55 676 676 HOH HOH . G 6 HOH A 56 677 677 HOH HOH . G 6 HOH A 57 678 678 HOH HOH . G 6 HOH A 58 679 679 HOH HOH . G 6 HOH A 59 680 680 HOH HOH . G 6 HOH A 60 681 681 HOH HOH . G 6 HOH A 61 682 682 HOH HOH . G 6 HOH A 62 683 683 HOH HOH . G 6 HOH A 63 684 684 HOH HOH . G 6 HOH A 64 685 685 HOH HOH . G 6 HOH A 65 686 686 HOH HOH . G 6 HOH A 66 687 687 HOH HOH . G 6 HOH A 67 688 688 HOH HOH . G 6 HOH A 68 689 689 HOH HOH . G 6 HOH A 69 690 690 HOH HOH . G 6 HOH A 70 691 691 HOH HOH . G 6 HOH A 71 692 692 HOH HOH . G 6 HOH A 72 693 693 HOH HOH . G 6 HOH A 73 694 694 HOH HOH . G 6 HOH A 74 695 695 HOH HOH . G 6 HOH A 75 696 696 HOH HOH . G 6 HOH A 76 697 697 HOH HOH . G 6 HOH A 77 698 698 HOH HOH . G 6 HOH A 78 699 699 HOH HOH . G 6 HOH A 79 701 701 HOH HOH . G 6 HOH A 80 702 702 HOH HOH . G 6 HOH A 81 703 703 HOH HOH . G 6 HOH A 82 706 706 HOH HOH . G 6 HOH A 83 707 707 HOH HOH . G 6 HOH A 84 708 708 HOH HOH . G 6 HOH A 85 709 709 HOH HOH . G 6 HOH A 86 710 710 HOH HOH . G 6 HOH A 87 711 711 HOH HOH . G 6 HOH A 88 712 712 HOH HOH . G 6 HOH A 89 713 713 HOH HOH . G 6 HOH A 90 714 714 HOH HOH . G 6 HOH A 91 715 715 HOH HOH . G 6 HOH A 92 721 721 HOH HOH . G 6 HOH A 93 723 723 HOH HOH . G 6 HOH A 94 724 724 HOH HOH . G 6 HOH A 95 725 725 HOH HOH . G 6 HOH A 96 726 726 HOH HOH . G 6 HOH A 97 727 727 HOH HOH . G 6 HOH A 98 728 728 HOH HOH . G 6 HOH A 99 729 729 HOH HOH . G 6 HOH A 100 730 730 HOH HOH . G 6 HOH A 101 731 731 HOH HOH . G 6 HOH A 102 732 732 HOH HOH . G 6 HOH A 103 733 733 HOH HOH . G 6 HOH A 104 734 734 HOH HOH . G 6 HOH A 105 735 735 HOH HOH . G 6 HOH A 106 737 737 HOH HOH . G 6 HOH A 107 738 738 HOH HOH . G 6 HOH A 108 739 739 HOH HOH . G 6 HOH A 109 740 740 HOH HOH . G 6 HOH A 110 741 741 HOH HOH . G 6 HOH A 111 742 742 HOH HOH . G 6 HOH A 112 743 743 HOH HOH . G 6 HOH A 113 744 744 HOH HOH . G 6 HOH A 114 745 745 HOH HOH . G 6 HOH A 115 746 746 HOH HOH . G 6 HOH A 116 747 747 HOH HOH . G 6 HOH A 117 748 748 HOH HOH . G 6 HOH A 118 749 749 HOH HOH . G 6 HOH A 119 750 750 HOH HOH . G 6 HOH A 120 752 752 HOH HOH . G 6 HOH A 121 753 753 HOH HOH . G 6 HOH A 122 754 754 HOH HOH . G 6 HOH A 123 755 755 HOH HOH . G 6 HOH A 124 759 759 HOH HOH . G 6 HOH A 125 760 760 HOH HOH . G 6 HOH A 126 761 761 HOH HOH . G 6 HOH A 127 762 762 HOH HOH . G 6 HOH A 128 763 763 HOH HOH . H 6 HOH B 1 623 623 HOH HOH . H 6 HOH B 2 631 631 HOH HOH . H 6 HOH B 3 641 641 HOH HOH . H 6 HOH B 4 655 655 HOH HOH . H 6 HOH B 5 700 700 HOH HOH . H 6 HOH B 6 704 704 HOH HOH . H 6 HOH B 7 705 705 HOH HOH . H 6 HOH B 8 719 719 HOH HOH . H 6 HOH B 9 720 720 HOH HOH . H 6 HOH B 10 722 722 HOH HOH . H 6 HOH B 11 751 751 HOH HOH . H 6 HOH B 12 756 756 HOH HOH . H 6 HOH B 13 757 757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . F 5 49.912 25.67 70.375 1 46.03 ? N CYS 395 A 1 HETATM 2 C CA CYS . . . F 5 49.359 25.703 71.753 1 73.07 ? CA CYS 395 A 1 HETATM 3 C C CYS . . . F 5 48.097 24.832 71.885 1 76.73 ? C CYS 395 A 1 HETATM 4 O O CYS . . . F 5 47.427 24.611 70.872 1 60.62 ? O CYS 395 A 1 HETATM 5 C CB CYS . . . F 5 49.134 27.159 72.279 1 55.85 ? CB CYS 395 A 1 HETATM 6 S SG CYS . . . F 5 49.489 27.402 74.045 1 34.82 ? SG CYS 395 A 1 HETATM 7 O OXT CYS . . . F 5 47.982 24.027 72.857 1 45.05 ? OXT CYS 395 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #