data_7APO # _model_server_result.job_id citKtGYPoVTJiLmN2MezWA _model_server_result.datetime_utc '2024-12-04 00:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7apo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 7APO # _exptl.entry_id 7APO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.169 _cell.angle_gamma 90 _cell.entry_id 7APO _cell.length_a 53.694 _cell.length_b 47.573 _cell.length_c 120.999 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7APO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 7APO _atom_sites.fract_transf_matrix[1][1] 0.018624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EQN A 1 501 1 EQN EQN . F 3 EQN B 1 501 1 EQN EQN . G 4 GOL B 1 502 1 GOL GOL . H 4 GOL C 1 801 2 GOL GOL . I 5 HOH A 1 601 19 HOH HOH . I 5 HOH A 2 602 89 HOH HOH . I 5 HOH A 3 603 126 HOH HOH . I 5 HOH A 4 604 6 HOH HOH . I 5 HOH A 5 605 147 HOH HOH . I 5 HOH A 6 606 1 HOH HOH . I 5 HOH A 7 607 41 HOH HOH . I 5 HOH A 8 608 9 HOH HOH . I 5 HOH A 9 609 131 HOH HOH . I 5 HOH A 10 610 48 HOH HOH . I 5 HOH A 11 611 3 HOH HOH . I 5 HOH A 12 612 47 HOH HOH . I 5 HOH A 13 613 36 HOH HOH . I 5 HOH A 14 614 12 HOH HOH . I 5 HOH A 15 615 18 HOH HOH . I 5 HOH A 16 616 64 HOH HOH . I 5 HOH A 17 617 46 HOH HOH . I 5 HOH A 18 618 50 HOH HOH . I 5 HOH A 19 619 21 HOH HOH . I 5 HOH A 20 620 85 HOH HOH . I 5 HOH A 21 621 29 HOH HOH . I 5 HOH A 22 622 59 HOH HOH . I 5 HOH A 23 623 2 HOH HOH . I 5 HOH A 24 624 77 HOH HOH . I 5 HOH A 25 625 49 HOH HOH . I 5 HOH A 26 626 96 HOH HOH . I 5 HOH A 27 627 22 HOH HOH . I 5 HOH A 28 628 70 HOH HOH . I 5 HOH A 29 629 32 HOH HOH . I 5 HOH A 30 630 98 HOH HOH . I 5 HOH A 31 631 132 HOH HOH . I 5 HOH A 32 632 95 HOH HOH . I 5 HOH A 33 633 130 HOH HOH . I 5 HOH A 34 634 52 HOH HOH . I 5 HOH A 35 635 39 HOH HOH . I 5 HOH A 36 636 4 HOH HOH . I 5 HOH A 37 637 7 HOH HOH . I 5 HOH A 38 638 101 HOH HOH . I 5 HOH A 39 639 65 HOH HOH . I 5 HOH A 40 640 134 HOH HOH . I 5 HOH A 41 641 133 HOH HOH . I 5 HOH A 42 642 102 HOH HOH . I 5 HOH A 43 643 122 HOH HOH . I 5 HOH A 44 644 100 HOH HOH . I 5 HOH A 45 645 125 HOH HOH . I 5 HOH A 46 646 141 HOH HOH . I 5 HOH A 47 647 148 HOH HOH . I 5 HOH A 48 648 116 HOH HOH . I 5 HOH A 49 649 69 HOH HOH . I 5 HOH A 50 650 20 HOH HOH . I 5 HOH A 51 651 153 HOH HOH . I 5 HOH A 52 652 57 HOH HOH . I 5 HOH A 53 653 117 HOH HOH . I 5 HOH A 54 654 115 HOH HOH . I 5 HOH A 55 655 155 HOH HOH . J 5 HOH B 1 601 149 HOH HOH . J 5 HOH B 2 602 23 HOH HOH . J 5 HOH B 3 603 53 HOH HOH . J 5 HOH B 4 604 10 HOH HOH . J 5 HOH B 5 605 16 HOH HOH . J 5 HOH B 6 606 114 HOH HOH . J 5 HOH B 7 607 123 HOH HOH . J 5 HOH B 8 608 82 HOH HOH . J 5 HOH B 9 609 15 HOH HOH . J 5 HOH B 10 610 5 HOH HOH . J 5 HOH B 11 611 110 HOH HOH . J 5 HOH B 12 612 51 HOH HOH . J 5 HOH B 13 613 43 HOH HOH . J 5 HOH B 14 614 104 HOH HOH . J 5 HOH B 15 615 138 HOH HOH . J 5 HOH B 16 616 42 HOH HOH . J 5 HOH B 17 617 34 HOH HOH . J 5 HOH B 18 618 61 HOH HOH . J 5 HOH B 19 619 76 HOH HOH . J 5 HOH B 20 620 136 HOH HOH . J 5 HOH B 21 621 31 HOH HOH . J 5 HOH B 22 622 30 HOH HOH . J 5 HOH B 23 623 88 HOH HOH . J 5 HOH B 24 624 54 HOH HOH . J 5 HOH B 25 625 119 HOH HOH . J 5 HOH B 26 626 56 HOH HOH . J 5 HOH B 27 627 60 HOH HOH . J 5 HOH B 28 628 127 HOH HOH . J 5 HOH B 29 629 45 HOH HOH . J 5 HOH B 30 630 68 HOH HOH . J 5 HOH B 31 631 14 HOH HOH . J 5 HOH B 32 632 78 HOH HOH . J 5 HOH B 33 633 24 HOH HOH . J 5 HOH B 34 634 129 HOH HOH . J 5 HOH B 35 635 13 HOH HOH . J 5 HOH B 36 636 151 HOH HOH . J 5 HOH B 37 637 17 HOH HOH . J 5 HOH B 38 638 62 HOH HOH . J 5 HOH B 39 639 140 HOH HOH . J 5 HOH B 40 640 120 HOH HOH . J 5 HOH B 41 641 108 HOH HOH . J 5 HOH B 42 642 142 HOH HOH . J 5 HOH B 43 643 105 HOH HOH . J 5 HOH B 44 644 91 HOH HOH . J 5 HOH B 45 645 124 HOH HOH . J 5 HOH B 46 646 86 HOH HOH . J 5 HOH B 47 647 107 HOH HOH . J 5 HOH B 48 648 93 HOH HOH . J 5 HOH B 49 649 72 HOH HOH . J 5 HOH B 50 650 109 HOH HOH . J 5 HOH B 51 651 113 HOH HOH . J 5 HOH B 52 652 144 HOH HOH . J 5 HOH B 53 653 135 HOH HOH . J 5 HOH B 54 654 40 HOH HOH . J 5 HOH B 55 655 38 HOH HOH . J 5 HOH B 56 656 11 HOH HOH . J 5 HOH B 57 657 137 HOH HOH . J 5 HOH B 58 658 152 HOH HOH . J 5 HOH B 59 659 94 HOH HOH . J 5 HOH B 60 660 83 HOH HOH . J 5 HOH B 61 661 154 HOH HOH . K 5 HOH C 1 901 55 HOH HOH . K 5 HOH C 2 902 143 HOH HOH . K 5 HOH C 3 903 27 HOH HOH . K 5 HOH C 4 904 145 HOH HOH . K 5 HOH C 5 905 156 HOH HOH . K 5 HOH C 6 906 99 HOH HOH . K 5 HOH C 7 907 112 HOH HOH . L 5 HOH D 1 801 128 HOH HOH . L 5 HOH D 2 802 58 HOH HOH . L 5 HOH D 3 803 146 HOH HOH . L 5 HOH D 4 804 139 HOH HOH . L 5 HOH D 5 805 75 HOH HOH . L 5 HOH D 6 806 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 13.534 7.311 -19.107 1 70.38 ? C1 GOL 502 B 1 HETATM 2 O O1 GOL . . . G 4 13.789 6.673 -17.895 1 72.1 ? O1 GOL 502 B 1 HETATM 3 C C2 GOL . . . G 4 14.727 8.253 -19.382 1 69.1 ? C2 GOL 502 B 1 HETATM 4 O O2 GOL . . . G 4 15.908 7.553 -19.561 1 67.39 ? O2 GOL 502 B 1 HETATM 5 C C3 GOL . . . G 4 14.322 9.047 -20.643 1 70.78 ? C3 GOL 502 B 1 HETATM 6 O O3 GOL . . . G 4 15.457 9.736 -21.064 1 69.41 ? O3 GOL 502 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #