data_7APT # _model_server_result.job_id Cogx9Z_14ANLa8CQGX242A _model_server_result.datetime_utc '2024-11-14 23:51:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7apt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7APT # _exptl.entry_id 7APT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.333 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-ethenyl-2-oxidanylidene-3,10-diazabicyclo[4.3.1]decan-3-yl]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7APT _cell.length_a 41.92 _cell.length_b 54.55 _cell.length_c 56.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7APT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 Cl2 N2 O5 S' _chem_comp.formula_weight 447.333 _chem_comp.id RRZ _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-ethenyl-2-oxidanylidene-3,10-diazabicyclo[4.3.1]decan-3-yl]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '((1S,5S,6R)-10-((3,5-dichlorophenyl)sulfonyl)-2-oxo-5-vinyl-3,10-diazabicyclo[4.3.1]decan-3-yl)acetic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C15 RRZ sing 277 n n C16 C15 RRZ doub 278 n y C16 C17 RRZ sing 279 n y CL2 C17 RRZ sing 280 n n C15 C14 RRZ sing 281 n y C17 C18 RRZ doub 282 n y O1 C6 RRZ doub 283 n n O2 C6 RRZ sing 284 n n C6 C5 RRZ sing 285 n n C14 C13 RRZ doub 286 n y C1 C2 RRZ doub 287 n n C18 C13 RRZ sing 288 n y C13 S1 RRZ sing 289 n n C2 C3 RRZ sing 290 n n C4 N1 RRZ sing 291 n n C4 C3 RRZ sing 292 n n C5 N1 RRZ sing 293 n n N1 C7 RRZ sing 294 n n C3 C12 RRZ sing 295 n n S1 N2 RRZ sing 296 n n S1 O4 RRZ doub 297 n n S1 O5 RRZ doub 298 n n C7 O3 RRZ doub 299 n n C7 C8 RRZ sing 300 n n N2 C12 RRZ sing 301 n n N2 C8 RRZ sing 302 n n C12 C11 RRZ sing 303 n n C8 C9 RRZ sing 304 n n C11 C10 RRZ sing 305 n n C9 C10 RRZ sing 306 n n C2 H1 RRZ sing 307 n n C3 H2 RRZ sing 308 n n C5 H3 RRZ sing 309 n n C5 H4 RRZ sing 310 n n C4 H5 RRZ sing 311 n n C4 H6 RRZ sing 312 n n C1 H7 RRZ sing 313 n n C1 H8 RRZ sing 314 n n O2 H9 RRZ sing 315 n n C8 H10 RRZ sing 316 n n C9 H11 RRZ sing 317 n n C9 H12 RRZ sing 318 n n C10 H13 RRZ sing 319 n n C10 H14 RRZ sing 320 n n C11 H15 RRZ sing 321 n n C11 H16 RRZ sing 322 n n C12 H17 RRZ sing 323 n n C14 H18 RRZ sing 324 n n C16 H19 RRZ sing 325 n n C18 H20 RRZ sing 326 n n # _atom_sites.entry_id 7APT _atom_sites.fract_transf_matrix[1][1] 0.023855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RRZ A 1 201 201 RRZ 175 . C 3 HOH A 1 301 150 HOH HOH . C 3 HOH A 2 302 100 HOH HOH . C 3 HOH A 3 303 57 HOH HOH . C 3 HOH A 4 304 60 HOH HOH . C 3 HOH A 5 305 105 HOH HOH . C 3 HOH A 6 306 106 HOH HOH . C 3 HOH A 7 307 81 HOH HOH . C 3 HOH A 8 308 69 HOH HOH . C 3 HOH A 9 309 108 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 13 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 110 HOH HOH . C 3 HOH A 14 314 6 HOH HOH . C 3 HOH A 15 315 109 HOH HOH . C 3 HOH A 16 316 12 HOH HOH . C 3 HOH A 17 317 41 HOH HOH . C 3 HOH A 18 318 7 HOH HOH . C 3 HOH A 19 319 111 HOH HOH . C 3 HOH A 20 320 2 HOH HOH . C 3 HOH A 21 321 9 HOH HOH . C 3 HOH A 22 322 97 HOH HOH . C 3 HOH A 23 323 26 HOH HOH . C 3 HOH A 24 324 96 HOH HOH . C 3 HOH A 25 325 36 HOH HOH . C 3 HOH A 26 326 42 HOH HOH . C 3 HOH A 27 327 68 HOH HOH . C 3 HOH A 28 328 62 HOH HOH . C 3 HOH A 29 329 3 HOH HOH . C 3 HOH A 30 330 44 HOH HOH . C 3 HOH A 31 331 33 HOH HOH . C 3 HOH A 32 332 31 HOH HOH . C 3 HOH A 33 333 61 HOH HOH . C 3 HOH A 34 334 107 HOH HOH . C 3 HOH A 35 335 50 HOH HOH . C 3 HOH A 36 336 22 HOH HOH . C 3 HOH A 37 337 59 HOH HOH . C 3 HOH A 38 338 4 HOH HOH . C 3 HOH A 39 339 89 HOH HOH . C 3 HOH A 40 340 56 HOH HOH . C 3 HOH A 41 341 73 HOH HOH . C 3 HOH A 42 342 43 HOH HOH . C 3 HOH A 43 343 14 HOH HOH . C 3 HOH A 44 344 88 HOH HOH . C 3 HOH A 45 345 37 HOH HOH . C 3 HOH A 46 346 23 HOH HOH . C 3 HOH A 47 347 84 HOH HOH . C 3 HOH A 48 348 75 HOH HOH . C 3 HOH A 49 349 38 HOH HOH . C 3 HOH A 50 350 53 HOH HOH . C 3 HOH A 51 351 30 HOH HOH . C 3 HOH A 52 352 148 HOH HOH . C 3 HOH A 53 353 85 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 45 HOH HOH . C 3 HOH A 56 356 11 HOH HOH . C 3 HOH A 57 357 40 HOH HOH . C 3 HOH A 58 358 16 HOH HOH . C 3 HOH A 59 359 80 HOH HOH . C 3 HOH A 60 360 1 HOH HOH . C 3 HOH A 61 361 39 HOH HOH . C 3 HOH A 62 362 34 HOH HOH . C 3 HOH A 63 363 35 HOH HOH . C 3 HOH A 64 364 70 HOH HOH . C 3 HOH A 65 365 49 HOH HOH . C 3 HOH A 66 366 77 HOH HOH . C 3 HOH A 67 367 55 HOH HOH . C 3 HOH A 68 368 48 HOH HOH . C 3 HOH A 69 369 21 HOH HOH . C 3 HOH A 70 370 83 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 63 HOH HOH . C 3 HOH A 73 373 24 HOH HOH . C 3 HOH A 74 374 8 HOH HOH . C 3 HOH A 75 375 17 HOH HOH . C 3 HOH A 76 376 65 HOH HOH . C 3 HOH A 77 377 28 HOH HOH . C 3 HOH A 78 378 99 HOH HOH . C 3 HOH A 79 379 32 HOH HOH . C 3 HOH A 80 380 29 HOH HOH . C 3 HOH A 81 381 20 HOH HOH . C 3 HOH A 82 382 25 HOH HOH . C 3 HOH A 83 383 64 HOH HOH . C 3 HOH A 84 384 74 HOH HOH . C 3 HOH A 85 385 51 HOH HOH . C 3 HOH A 86 386 27 HOH HOH . C 3 HOH A 87 387 93 HOH HOH . C 3 HOH A 88 388 15 HOH HOH . C 3 HOH A 89 389 76 HOH HOH . C 3 HOH A 90 390 66 HOH HOH . C 3 HOH A 91 391 101 HOH HOH . C 3 HOH A 92 392 72 HOH HOH . C 3 HOH A 93 393 82 HOH HOH . C 3 HOH A 94 394 46 HOH HOH . C 3 HOH A 95 395 103 HOH HOH . C 3 HOH A 96 396 91 HOH HOH . C 3 HOH A 97 397 78 HOH HOH . C 3 HOH A 98 398 79 HOH HOH . C 3 HOH A 99 399 5 HOH HOH . C 3 HOH A 100 400 67 HOH HOH . C 3 HOH A 101 401 47 HOH HOH . C 3 HOH A 102 402 19 HOH HOH . C 3 HOH A 103 403 128 HOH HOH . C 3 HOH A 104 404 92 HOH HOH . C 3 HOH A 105 405 52 HOH HOH . C 3 HOH A 106 406 147 HOH HOH . C 3 HOH A 107 407 86 HOH HOH . C 3 HOH A 108 408 58 HOH HOH . C 3 HOH A 109 409 87 HOH HOH . C 3 HOH A 110 410 95 HOH HOH . C 3 HOH A 111 411 154 HOH HOH . C 3 HOH A 112 412 90 HOH HOH . C 3 HOH A 113 413 141 HOH HOH . C 3 HOH A 114 414 112 HOH HOH . C 3 HOH A 115 415 122 HOH HOH . C 3 HOH A 116 416 117 HOH HOH . C 3 HOH A 117 417 98 HOH HOH . C 3 HOH A 118 418 152 HOH HOH . C 3 HOH A 119 419 149 HOH HOH . C 3 HOH A 120 420 115 HOH HOH . C 3 HOH A 121 421 102 HOH HOH . C 3 HOH A 122 422 151 HOH HOH . C 3 HOH A 123 423 104 HOH HOH . C 3 HOH A 124 424 118 HOH HOH . C 3 HOH A 125 425 94 HOH HOH . C 3 HOH A 126 426 123 HOH HOH . C 3 HOH A 127 427 136 HOH HOH . C 3 HOH A 128 428 130 HOH HOH . C 3 HOH A 129 429 153 HOH HOH . C 3 HOH A 130 430 146 HOH HOH . C 3 HOH A 131 431 125 HOH HOH . C 3 HOH A 132 432 127 HOH HOH . C 3 HOH A 133 433 135 HOH HOH . C 3 HOH A 134 434 145 HOH HOH . C 3 HOH A 135 435 140 HOH HOH . C 3 HOH A 136 436 113 HOH HOH . C 3 HOH A 137 437 137 HOH HOH . C 3 HOH A 138 438 131 HOH HOH . C 3 HOH A 139 439 139 HOH HOH . C 3 HOH A 140 440 155 HOH HOH . C 3 HOH A 141 441 114 HOH HOH . C 3 HOH A 142 442 124 HOH HOH . C 3 HOH A 143 443 138 HOH HOH . C 3 HOH A 144 444 129 HOH HOH . C 3 HOH A 145 445 121 HOH HOH . C 3 HOH A 146 446 126 HOH HOH . C 3 HOH A 147 447 134 HOH HOH . C 3 HOH A 148 448 116 HOH HOH . C 3 HOH A 149 449 119 HOH HOH . C 3 HOH A 150 450 133 HOH HOH . C 3 HOH A 151 451 120 HOH HOH . C 3 HOH A 152 452 144 HOH HOH . C 3 HOH A 153 453 132 HOH HOH . C 3 HOH A 154 454 142 HOH HOH . C 3 HOH A 155 455 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 RRZ . . . B 2 8.277 -17.512 -19.731 0.7 21.46 ? C2 RRZ 201 A 1 HETATM 2 N N2 RRZ . . . B 2 8.813 -14.371 -17.909 0.7 16.73 ? N2 RRZ 201 A 1 HETATM 3 C C3 RRZ . . . B 2 9.178 -16.714 -18.823 0.7 18.57 ? C3 RRZ 201 A 1 HETATM 4 C C5 RRZ . . . B 2 12.439 -16.014 -19.596 0.7 21.68 ? C5 RRZ 201 A 1 HETATM 5 C C4 RRZ . . . B 2 10.048 -15.877 -19.722 0.7 18.3 ? C4 RRZ 201 A 1 HETATM 6 C C1 RRZ . . . B 2 7.326 -17.051 -20.42 0.7 28.19 ? C1 RRZ 201 A 1 HETATM 7 N N1 RRZ . . . B 2 11.219 -15.446 -19.045 0.7 17.81 ? N1 RRZ 201 A 1 HETATM 8 C C6 RRZ . . . B 2 12.922 -15.33 -20.89 0.7 25.25 ? C6 RRZ 201 A 1 HETATM 9 O O1 RRZ . . . B 2 13.886 -15.869 -21.527 0.7 25.17 ? O1 RRZ 201 A 1 HETATM 10 O O2 RRZ . . . B 2 12.323 -14.289 -21.266 0.7 24.33 -1 O2 RRZ 201 A 1 HETATM 11 C C7 RRZ . . . B 2 11.301 -14.657 -17.941 0.7 18.75 ? C7 RRZ 201 A 1 HETATM 12 O O3 RRZ . . . B 2 12.389 -14.389 -17.453 0.7 18.5 ? O3 RRZ 201 A 1 HETATM 13 C C8 RRZ . . . B 2 10.11 -14.051 -17.261 0.7 16.38 ? C8 RRZ 201 A 1 HETATM 14 C C9 RRZ . . . B 2 10.027 -14.518 -15.808 0.7 16.26 ? C9 RRZ 201 A 1 HETATM 15 C C10 RRZ . . . B 2 9.665 -16.006 -15.743 0.7 15.91 ? C10 RRZ 201 A 1 HETATM 16 C C11 RRZ . . . B 2 8.337 -16.274 -16.439 0.7 14.74 ? C11 RRZ 201 A 1 HETATM 17 C C12 RRZ . . . B 2 8.356 -15.793 -17.855 0.7 18.91 ? C12 RRZ 201 A 1 HETATM 18 S S1 RRZ . . . B 2 7.683 -13.188 -18.136 0.7 17.75 ? S1 RRZ 201 A 1 HETATM 19 O O4 RRZ . . . B 2 8.372 -11.959 -17.869 0.7 18.06 ? O4 RRZ 201 A 1 HETATM 20 O O5 RRZ . . . B 2 6.514 -13.589 -17.449 0.7 17.36 ? O5 RRZ 201 A 1 HETATM 21 C C13 RRZ . . . B 2 7.264 -13.266 -19.859 0.7 18.21 ? C13 RRZ 201 A 1 HETATM 22 C C14 RRZ . . . B 2 8.149 -12.773 -20.792 0.7 19.9 ? C14 RRZ 201 A 1 HETATM 23 C C15 RRZ . . . B 2 7.777 -12.792 -22.121 0.7 21.29 ? C15 RRZ 201 A 1 HETATM 24 CL CL1 RRZ . . . B 2 8.915 -12.196 -23.262 0.7 23.8 ? CL1 RRZ 201 A 1 HETATM 25 C C16 RRZ . . . B 2 6.597 -13.328 -22.575 0.7 22.23 ? C16 RRZ 201 A 1 HETATM 26 C C17 RRZ . . . B 2 5.74 -13.805 -21.62 0.7 21.41 ? C17 RRZ 201 A 1 HETATM 27 CL CL2 RRZ . . . B 2 4.175 -14.361 -22.136 0.7 26.56 ? CL2 RRZ 201 A 1 HETATM 28 C C18 RRZ . . . B 2 6.033 -13.73 -20.274 0.7 20.74 ? C18 RRZ 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #