data_7APZ # _model_server_result.job_id FOQTdudUG8G2r8UtenvFfg _model_server_result.datetime_utc '2024-10-19 22:33:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7apz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":213}' # _entry.id 7APZ # _exptl.entry_id 7APZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7APZ _cell.length_a 82.803 _cell.length_b 82.803 _cell.length_c 263.071 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7APZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 41.4015 71.709502 43.845167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 L N N ? 5 N N N ? 5 U N N ? 5 W N N ? 5 X N N ? 5 AA N N ? 5 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 111 1_555 A SG CYS 166 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 B SG CYS 42 B CYS 15 1_555 B SG CYS 106 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf3 B SG CYS 144 B CYS 117 1_555 B SG CYS 200 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 B ND2 ASN 46 B ASN 19 1_555 V C1 NAG . B NAG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A OD1 ASP 19 A ASP 20 1_555 N ZN ZN . A ZN 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 A OD2 ASP 19 A ASP 20 1_555 N ZN ZN . A ZN 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A NE2 HIS 36 A HIS 37 1_555 F ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A OE1 GLU 38 A GLU 39 1_555 H ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 A OE2 GLU 104 A GLU 105 1_555 X ZN ZN . B ZN 210 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 A OE2 GLU 133 A GLU 134 1_555 U ZN ZN . B ZN 207 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 A ND1 HIS 170 A HIS 171 1_555 G ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 F ZN ZN . A ZN 204 1_555 CA O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc9 F ZN ZN . A ZN 204 1_555 CA O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 F ZN ZN . A ZN 204 1_555 CA O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc11 F ZN ZN . A ZN 204 1_555 CA O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc12 G ZN ZN . A ZN 205 1_555 CA O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc13 G ZN ZN . A ZN 205 1_555 CA O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc14 H ZN ZN . A ZN 206 1_555 CA O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc15 N ZN ZN . A ZN 212 1_555 CA O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc16 N ZN ZN . A ZN 212 1_555 CA O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc17 B ND1 HIS 43 B HIS 16 1_555 W ZN ZN . B ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc18 B OE2 GLU 49 B GLU 22 1_555 X ZN ZN . B ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc19 B NE2 HIS 66 B HIS 39 1_555 U ZN ZN . B ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc20 B ND1 HIS 108 B HIS 81 1_555 Y NI NI . B NI 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc21 B OE2 GLU 123 B GLU 96 1_555 AA ZN ZN . B ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc22 B OE1 GLU 138 B GLU 111 1_555 W ZN ZN . B ZN 209 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc23 B OD1 ASP 173 B ASP 146 1_555 BA ZN ZN . B ZN 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc24 B OE1 GLU 189 B GLU 162 1_555 BA ZN ZN . B ZN 214 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc25 U ZN ZN . B ZN 207 1_555 DA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc26 U ZN ZN . B ZN 207 1_555 DA O HOH . B HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc27 W ZN ZN . B ZN 209 1_555 DA O HOH . B HOH 344 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc28 W ZN ZN . B ZN 209 1_555 DA O HOH . B HOH 346 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc29 Y NI NI . B NI 211 1_555 DA O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc30 Y NI NI . B NI 211 1_555 DA O HOH . B HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc31 Y NI NI . B NI 211 1_555 DA O HOH . B HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc32 BA ZN ZN . B ZN 214 1_555 DA O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7APZ _atom_sites.fract_transf_matrix[1][1] 0.012077 _atom_sites.fract_transf_matrix[1][2] 0.006973 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IMD A 1 201 195 IMD IMD . D 4 ACE A 1 202 196 ACE ACE . E 4 ACE A 1 203 197 ACE ACE . F 5 ZN A 1 204 198 ZN ZN . G 5 ZN A 1 205 199 ZN ZN . H 5 ZN A 1 206 200 ZN ZN . I 4 ACE A 1 207 201 ACE ACE . J 4 ACE A 1 208 203 ACE ACE . K 4 ACE A 1 209 206 ACE ACE . L 5 ZN A 1 210 209 ZN ZN . M 6 PEG A 1 211 210 PEG PEG . N 5 ZN A 1 212 211 ZN ZN . O 4 ACE B 1 201 202 ACE ACE . P 4 ACE B 1 202 204 ACE ACE . Q 4 ACE B 1 203 205 ACE ACE . R 4 ACE B 1 204 207 ACE ACE . S 3 IMD B 1 205 208 IMD IMD . T 4 ACE B 1 206 195 ACE ACE . U 5 ZN B 1 207 196 ZN ZN . V 7 NAG B 1 208 197 NAG NAG . W 5 ZN B 1 209 198 ZN ZN . X 5 ZN B 1 210 199 ZN ZN . Y 8 NI B 1 211 200 NI NI . Z 7 NAG B 1 212 201 NAG NAG . AA 5 ZN B 1 213 202 ZN ZN . BA 5 ZN B 1 214 203 ZN ZN . CA 9 HOH A 1 301 121 HOH HOH . CA 9 HOH A 2 302 82 HOH HOH . CA 9 HOH A 3 303 93 HOH HOH . CA 9 HOH A 4 304 44 HOH HOH . CA 9 HOH A 5 305 114 HOH HOH . CA 9 HOH A 6 306 73 HOH HOH . CA 9 HOH A 7 307 35 HOH HOH . CA 9 HOH A 8 308 119 HOH HOH . CA 9 HOH A 9 309 92 HOH HOH . CA 9 HOH A 10 310 83 HOH HOH . CA 9 HOH A 11 311 1 HOH HOH . CA 9 HOH A 12 312 11 HOH HOH . CA 9 HOH A 13 313 49 HOH HOH . CA 9 HOH A 14 314 8 HOH HOH . CA 9 HOH A 15 315 102 HOH HOH . CA 9 HOH A 16 316 42 HOH HOH . CA 9 HOH A 17 317 18 HOH HOH . CA 9 HOH A 18 318 10 HOH HOH . CA 9 HOH A 19 319 126 HOH HOH . CA 9 HOH A 20 320 2 HOH HOH . CA 9 HOH A 21 321 113 HOH HOH . CA 9 HOH A 22 322 5 HOH HOH . CA 9 HOH A 23 323 12 HOH HOH . CA 9 HOH A 24 324 43 HOH HOH . CA 9 HOH A 25 325 80 HOH HOH . CA 9 HOH A 26 326 26 HOH HOH . CA 9 HOH A 27 327 65 HOH HOH . CA 9 HOH A 28 328 34 HOH HOH . CA 9 HOH A 29 329 46 HOH HOH . CA 9 HOH A 30 330 15 HOH HOH . CA 9 HOH A 31 331 9 HOH HOH . CA 9 HOH A 32 332 28 HOH HOH . CA 9 HOH A 33 333 29 HOH HOH . CA 9 HOH A 34 334 20 HOH HOH . CA 9 HOH A 35 335 31 HOH HOH . CA 9 HOH A 36 336 72 HOH HOH . CA 9 HOH A 37 337 7 HOH HOH . CA 9 HOH A 38 338 17 HOH HOH . CA 9 HOH A 39 339 84 HOH HOH . CA 9 HOH A 40 340 40 HOH HOH . CA 9 HOH A 41 341 125 HOH HOH . CA 9 HOH A 42 342 4 HOH HOH . CA 9 HOH A 43 343 101 HOH HOH . CA 9 HOH A 44 344 71 HOH HOH . CA 9 HOH A 45 345 36 HOH HOH . CA 9 HOH A 46 346 61 HOH HOH . CA 9 HOH A 47 347 23 HOH HOH . CA 9 HOH A 48 348 79 HOH HOH . CA 9 HOH A 49 349 3 HOH HOH . CA 9 HOH A 50 350 112 HOH HOH . CA 9 HOH A 51 351 103 HOH HOH . CA 9 HOH A 52 352 16 HOH HOH . CA 9 HOH A 53 353 97 HOH HOH . CA 9 HOH A 54 354 118 HOH HOH . CA 9 HOH A 55 355 96 HOH HOH . CA 9 HOH A 56 356 63 HOH HOH . CA 9 HOH A 57 357 59 HOH HOH . CA 9 HOH A 58 358 104 HOH HOH . CA 9 HOH A 59 359 108 HOH HOH . CA 9 HOH A 60 360 19 HOH HOH . CA 9 HOH A 61 361 117 HOH HOH . CA 9 HOH A 62 362 74 HOH HOH . CA 9 HOH A 63 363 106 HOH HOH . CA 9 HOH A 64 364 60 HOH HOH . CA 9 HOH A 65 365 62 HOH HOH . CA 9 HOH A 66 366 64 HOH HOH . CA 9 HOH A 67 367 33 HOH HOH . CA 9 HOH A 68 368 89 HOH HOH . CA 9 HOH A 69 369 88 HOH HOH . DA 9 HOH B 1 301 116 HOH HOH . DA 9 HOH B 2 302 107 HOH HOH . DA 9 HOH B 3 303 48 HOH HOH . DA 9 HOH B 4 304 111 HOH HOH . DA 9 HOH B 5 305 100 HOH HOH . DA 9 HOH B 6 306 41 HOH HOH . DA 9 HOH B 7 307 109 HOH HOH . DA 9 HOH B 8 308 32 HOH HOH . DA 9 HOH B 9 309 86 HOH HOH . DA 9 HOH B 10 310 85 HOH HOH . DA 9 HOH B 11 311 27 HOH HOH . DA 9 HOH B 12 312 51 HOH HOH . DA 9 HOH B 13 313 70 HOH HOH . DA 9 HOH B 14 314 124 HOH HOH . DA 9 HOH B 15 315 53 HOH HOH . DA 9 HOH B 16 316 50 HOH HOH . DA 9 HOH B 17 317 90 HOH HOH . DA 9 HOH B 18 318 54 HOH HOH . DA 9 HOH B 19 319 14 HOH HOH . DA 9 HOH B 20 320 52 HOH HOH . DA 9 HOH B 21 321 37 HOH HOH . DA 9 HOH B 22 322 25 HOH HOH . DA 9 HOH B 23 323 67 HOH HOH . DA 9 HOH B 24 324 22 HOH HOH . DA 9 HOH B 25 325 91 HOH HOH . DA 9 HOH B 26 326 55 HOH HOH . DA 9 HOH B 27 327 21 HOH HOH . DA 9 HOH B 28 328 38 HOH HOH . DA 9 HOH B 29 329 66 HOH HOH . DA 9 HOH B 30 330 56 HOH HOH . DA 9 HOH B 31 331 24 HOH HOH . DA 9 HOH B 32 332 122 HOH HOH . DA 9 HOH B 33 333 39 HOH HOH . DA 9 HOH B 34 334 75 HOH HOH . DA 9 HOH B 35 335 13 HOH HOH . DA 9 HOH B 36 336 58 HOH HOH . DA 9 HOH B 37 337 30 HOH HOH . DA 9 HOH B 38 338 123 HOH HOH . DA 9 HOH B 39 339 57 HOH HOH . DA 9 HOH B 40 340 6 HOH HOH . DA 9 HOH B 41 341 81 HOH HOH . DA 9 HOH B 42 342 105 HOH HOH . DA 9 HOH B 43 343 120 HOH HOH . DA 9 HOH B 44 344 95 HOH HOH . DA 9 HOH B 45 345 78 HOH HOH . DA 9 HOH B 46 346 94 HOH HOH . DA 9 HOH B 47 347 110 HOH HOH . DA 9 HOH B 48 348 69 HOH HOH . DA 9 HOH B 49 349 68 HOH HOH . DA 9 HOH B 50 350 77 HOH HOH . DA 9 HOH B 51 351 115 HOH HOH . DA 9 HOH B 52 352 47 HOH HOH . DA 9 HOH B 53 353 76 HOH HOH . DA 9 HOH B 54 354 98 HOH HOH . DA 9 HOH B 55 355 45 HOH HOH . DA 9 HOH B 56 356 99 HOH HOH . DA 9 HOH B 57 357 87 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id AA _atom_site.label_entity_id 5 _atom_site.Cartn_x -8.165 _atom_site.Cartn_y 28.45 _atom_site.Cartn_z 36.137 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 121.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 213 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #