data_7AQE # _model_server_result.job_id nJySybqNY4TmW5o81Gh2Qw _model_server_result.datetime_utc '2024-11-07 19:11:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7AQE # _exptl.entry_id 7AQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.171 _cell.angle_gamma 90 _cell.entry_id 7AQE _cell.length_a 113.501 _cell.length_b 53.153 _cell.length_c 44.778 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7AQE _atom_sites.fract_transf_matrix[1][1] 0.00881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 401 1 CL CL . C 3 DMS A 1 402 401 DMS DMS . D 3 DMS A 1 403 501 DMS DMS . E 4 RV5 A 1 404 1101 RV5 LIG . F 3 DMS A 1 405 1201 DMS DMS . G 5 HOH A 1 501 58 HOH HOH . G 5 HOH A 2 502 254 HOH HOH . G 5 HOH A 3 503 116 HOH HOH . G 5 HOH A 4 504 282 HOH HOH . G 5 HOH A 5 505 220 HOH HOH . G 5 HOH A 6 506 100 HOH HOH . G 5 HOH A 7 507 273 HOH HOH . G 5 HOH A 8 508 243 HOH HOH . G 5 HOH A 9 509 202 HOH HOH . G 5 HOH A 10 510 124 HOH HOH . G 5 HOH A 11 511 184 HOH HOH . G 5 HOH A 12 512 111 HOH HOH . G 5 HOH A 13 513 74 HOH HOH . G 5 HOH A 14 514 268 HOH HOH . G 5 HOH A 15 515 117 HOH HOH . G 5 HOH A 16 516 134 HOH HOH . G 5 HOH A 17 517 229 HOH HOH . G 5 HOH A 18 518 78 HOH HOH . G 5 HOH A 19 519 90 HOH HOH . G 5 HOH A 20 520 210 HOH HOH . G 5 HOH A 21 521 205 HOH HOH . G 5 HOH A 22 522 57 HOH HOH . G 5 HOH A 23 523 163 HOH HOH . G 5 HOH A 24 524 240 HOH HOH . G 5 HOH A 25 525 204 HOH HOH . G 5 HOH A 26 526 170 HOH HOH . G 5 HOH A 27 527 40 HOH HOH . G 5 HOH A 28 528 155 HOH HOH . G 5 HOH A 29 529 9 HOH HOH . G 5 HOH A 30 530 171 HOH HOH . G 5 HOH A 31 531 34 HOH HOH . G 5 HOH A 32 532 44 HOH HOH . G 5 HOH A 33 533 145 HOH HOH . G 5 HOH A 34 534 159 HOH HOH . G 5 HOH A 35 535 1 HOH HOH . G 5 HOH A 36 536 4 HOH HOH . G 5 HOH A 37 537 167 HOH HOH . G 5 HOH A 38 538 91 HOH HOH . G 5 HOH A 39 539 83 HOH HOH . G 5 HOH A 40 540 10 HOH HOH . G 5 HOH A 41 541 41 HOH HOH . G 5 HOH A 42 542 24 HOH HOH . G 5 HOH A 43 543 103 HOH HOH . G 5 HOH A 44 544 107 HOH HOH . G 5 HOH A 45 545 35 HOH HOH . G 5 HOH A 46 546 28 HOH HOH . G 5 HOH A 47 547 266 HOH HOH . G 5 HOH A 48 548 32 HOH HOH . G 5 HOH A 49 549 55 HOH HOH . G 5 HOH A 50 550 244 HOH HOH . G 5 HOH A 51 551 129 HOH HOH . G 5 HOH A 52 552 50 HOH HOH . G 5 HOH A 53 553 45 HOH HOH . G 5 HOH A 54 554 255 HOH HOH . G 5 HOH A 55 555 77 HOH HOH . G 5 HOH A 56 556 33 HOH HOH . G 5 HOH A 57 557 27 HOH HOH . G 5 HOH A 58 558 61 HOH HOH . G 5 HOH A 59 559 53 HOH HOH . G 5 HOH A 60 560 101 HOH HOH . G 5 HOH A 61 561 128 HOH HOH . G 5 HOH A 62 562 31 HOH HOH . G 5 HOH A 63 563 25 HOH HOH . G 5 HOH A 64 564 214 HOH HOH . G 5 HOH A 65 565 127 HOH HOH . G 5 HOH A 66 566 56 HOH HOH . G 5 HOH A 67 567 242 HOH HOH . G 5 HOH A 68 568 63 HOH HOH . G 5 HOH A 69 569 16 HOH HOH . G 5 HOH A 70 570 158 HOH HOH . G 5 HOH A 71 571 225 HOH HOH . G 5 HOH A 72 572 17 HOH HOH . G 5 HOH A 73 573 93 HOH HOH . G 5 HOH A 74 574 114 HOH HOH . G 5 HOH A 75 575 232 HOH HOH . G 5 HOH A 76 576 192 HOH HOH . G 5 HOH A 77 577 198 HOH HOH . G 5 HOH A 78 578 149 HOH HOH . G 5 HOH A 79 579 36 HOH HOH . G 5 HOH A 80 580 79 HOH HOH . G 5 HOH A 81 581 64 HOH HOH . G 5 HOH A 82 582 238 HOH HOH . G 5 HOH A 83 583 224 HOH HOH . G 5 HOH A 84 584 2 HOH HOH . G 5 HOH A 85 585 179 HOH HOH . G 5 HOH A 86 586 106 HOH HOH . G 5 HOH A 87 587 80 HOH HOH . G 5 HOH A 88 588 5 HOH HOH . G 5 HOH A 89 589 30 HOH HOH . G 5 HOH A 90 590 70 HOH HOH . G 5 HOH A 91 591 135 HOH HOH . G 5 HOH A 92 592 59 HOH HOH . G 5 HOH A 93 593 54 HOH HOH . G 5 HOH A 94 594 130 HOH HOH . G 5 HOH A 95 595 29 HOH HOH . G 5 HOH A 96 596 37 HOH HOH . G 5 HOH A 97 597 23 HOH HOH . G 5 HOH A 98 598 258 HOH HOH . G 5 HOH A 99 599 3 HOH HOH . G 5 HOH A 100 600 38 HOH HOH . G 5 HOH A 101 601 13 HOH HOH . G 5 HOH A 102 602 175 HOH HOH . G 5 HOH A 103 603 49 HOH HOH . G 5 HOH A 104 604 209 HOH HOH . G 5 HOH A 105 605 118 HOH HOH . G 5 HOH A 106 606 60 HOH HOH . G 5 HOH A 107 607 207 HOH HOH . G 5 HOH A 108 608 21 HOH HOH . G 5 HOH A 109 609 76 HOH HOH . G 5 HOH A 110 610 178 HOH HOH . G 5 HOH A 111 611 256 HOH HOH . G 5 HOH A 112 612 96 HOH HOH . G 5 HOH A 113 613 280 HOH HOH . G 5 HOH A 114 614 217 HOH HOH . G 5 HOH A 115 615 6 HOH HOH . G 5 HOH A 116 616 26 HOH HOH . G 5 HOH A 117 617 162 HOH HOH . G 5 HOH A 118 618 172 HOH HOH . G 5 HOH A 119 619 51 HOH HOH . G 5 HOH A 120 620 112 HOH HOH . G 5 HOH A 121 621 20 HOH HOH . G 5 HOH A 122 622 72 HOH HOH . G 5 HOH A 123 623 190 HOH HOH . G 5 HOH A 124 624 105 HOH HOH . G 5 HOH A 125 625 275 HOH HOH . G 5 HOH A 126 626 233 HOH HOH . G 5 HOH A 127 627 215 HOH HOH . G 5 HOH A 128 628 213 HOH HOH . G 5 HOH A 129 629 82 HOH HOH . G 5 HOH A 130 630 52 HOH HOH . G 5 HOH A 131 631 119 HOH HOH . G 5 HOH A 132 632 218 HOH HOH . G 5 HOH A 133 633 22 HOH HOH . G 5 HOH A 134 634 48 HOH HOH . G 5 HOH A 135 635 85 HOH HOH . G 5 HOH A 136 636 18 HOH HOH . G 5 HOH A 137 637 14 HOH HOH . G 5 HOH A 138 638 212 HOH HOH . G 5 HOH A 139 639 166 HOH HOH . G 5 HOH A 140 640 173 HOH HOH . G 5 HOH A 141 641 109 HOH HOH . G 5 HOH A 142 642 95 HOH HOH . G 5 HOH A 143 643 193 HOH HOH . G 5 HOH A 144 644 241 HOH HOH . G 5 HOH A 145 645 199 HOH HOH . G 5 HOH A 146 646 122 HOH HOH . G 5 HOH A 147 647 164 HOH HOH . G 5 HOH A 148 648 169 HOH HOH . G 5 HOH A 149 649 11 HOH HOH . G 5 HOH A 150 650 87 HOH HOH . G 5 HOH A 151 651 65 HOH HOH . G 5 HOH A 152 652 71 HOH HOH . G 5 HOH A 153 653 7 HOH HOH . G 5 HOH A 154 654 260 HOH HOH . G 5 HOH A 155 655 102 HOH HOH . G 5 HOH A 156 656 104 HOH HOH . G 5 HOH A 157 657 150 HOH HOH . G 5 HOH A 158 658 86 HOH HOH . G 5 HOH A 159 659 98 HOH HOH . G 5 HOH A 160 660 46 HOH HOH . G 5 HOH A 161 661 253 HOH HOH . G 5 HOH A 162 662 234 HOH HOH . G 5 HOH A 163 663 261 HOH HOH . G 5 HOH A 164 664 88 HOH HOH . G 5 HOH A 165 665 94 HOH HOH . G 5 HOH A 166 666 248 HOH HOH . G 5 HOH A 167 667 138 HOH HOH . G 5 HOH A 168 668 235 HOH HOH . G 5 HOH A 169 669 174 HOH HOH . G 5 HOH A 170 670 67 HOH HOH . G 5 HOH A 171 671 277 HOH HOH . G 5 HOH A 172 672 227 HOH HOH . G 5 HOH A 173 673 68 HOH HOH . G 5 HOH A 174 674 186 HOH HOH . G 5 HOH A 175 675 75 HOH HOH . G 5 HOH A 176 676 89 HOH HOH . G 5 HOH A 177 677 136 HOH HOH . G 5 HOH A 178 678 156 HOH HOH . G 5 HOH A 179 679 12 HOH HOH . G 5 HOH A 180 680 257 HOH HOH . G 5 HOH A 181 681 19 HOH HOH . G 5 HOH A 182 682 39 HOH HOH . G 5 HOH A 183 683 168 HOH HOH . G 5 HOH A 184 684 42 HOH HOH . G 5 HOH A 185 685 84 HOH HOH . G 5 HOH A 186 686 8 HOH HOH . G 5 HOH A 187 687 133 HOH HOH . G 5 HOH A 188 688 153 HOH HOH . G 5 HOH A 189 689 157 HOH HOH . G 5 HOH A 190 690 230 HOH HOH . G 5 HOH A 191 691 69 HOH HOH . G 5 HOH A 192 692 176 HOH HOH . G 5 HOH A 193 693 165 HOH HOH . G 5 HOH A 194 694 182 HOH HOH . G 5 HOH A 195 695 226 HOH HOH . G 5 HOH A 196 696 283 HOH HOH . G 5 HOH A 197 697 132 HOH HOH . G 5 HOH A 198 698 272 HOH HOH . G 5 HOH A 199 699 115 HOH HOH . G 5 HOH A 200 700 154 HOH HOH . G 5 HOH A 201 701 263 HOH HOH . G 5 HOH A 202 702 271 HOH HOH . G 5 HOH A 203 703 15 HOH HOH . G 5 HOH A 204 704 123 HOH HOH . G 5 HOH A 205 705 203 HOH HOH . G 5 HOH A 206 706 270 HOH HOH . G 5 HOH A 207 707 223 HOH HOH . G 5 HOH A 208 708 239 HOH HOH . G 5 HOH A 209 709 259 HOH HOH . G 5 HOH A 210 710 247 HOH HOH . G 5 HOH A 211 711 43 HOH HOH . G 5 HOH A 212 712 216 HOH HOH . G 5 HOH A 213 713 206 HOH HOH . G 5 HOH A 214 714 126 HOH HOH . G 5 HOH A 215 715 147 HOH HOH . G 5 HOH A 216 716 245 HOH HOH . G 5 HOH A 217 717 181 HOH HOH . G 5 HOH A 218 718 279 HOH HOH . G 5 HOH A 219 719 151 HOH HOH . G 5 HOH A 220 720 121 HOH HOH . G 5 HOH A 221 721 152 HOH HOH . G 5 HOH A 222 722 208 HOH HOH . G 5 HOH A 223 723 264 HOH HOH . G 5 HOH A 224 724 113 HOH HOH . G 5 HOH A 225 725 160 HOH HOH . G 5 HOH A 226 726 200 HOH HOH . G 5 HOH A 227 727 237 HOH HOH . G 5 HOH A 228 728 137 HOH HOH . G 5 HOH A 229 729 231 HOH HOH . G 5 HOH A 230 730 194 HOH HOH . G 5 HOH A 231 731 276 HOH HOH . G 5 HOH A 232 732 161 HOH HOH . G 5 HOH A 233 733 144 HOH HOH . G 5 HOH A 234 734 187 HOH HOH . G 5 HOH A 235 735 146 HOH HOH . G 5 HOH A 236 736 183 HOH HOH . G 5 HOH A 237 737 281 HOH HOH . G 5 HOH A 238 738 97 HOH HOH . G 5 HOH A 239 739 222 HOH HOH . G 5 HOH A 240 740 191 HOH HOH . G 5 HOH A 241 741 120 HOH HOH . G 5 HOH A 242 742 221 HOH HOH . G 5 HOH A 243 743 249 HOH HOH . G 5 HOH A 244 744 236 HOH HOH . G 5 HOH A 245 745 62 HOH HOH . G 5 HOH A 246 746 219 HOH HOH . G 5 HOH A 247 747 81 HOH HOH . G 5 HOH A 248 748 185 HOH HOH . G 5 HOH A 249 749 92 HOH HOH . G 5 HOH A 250 750 148 HOH HOH . G 5 HOH A 251 751 228 HOH HOH . G 5 HOH A 252 752 177 HOH HOH . G 5 HOH A 253 753 250 HOH HOH . G 5 HOH A 254 754 267 HOH HOH . G 5 HOH A 255 755 142 HOH HOH . G 5 HOH A 256 756 189 HOH HOH . G 5 HOH A 257 757 196 HOH HOH . G 5 HOH A 258 758 180 HOH HOH . G 5 HOH A 259 759 143 HOH HOH . G 5 HOH A 260 760 66 HOH HOH . G 5 HOH A 261 761 110 HOH HOH . G 5 HOH A 262 762 251 HOH HOH . G 5 HOH A 263 763 278 HOH HOH . G 5 HOH A 264 764 201 HOH HOH . G 5 HOH A 265 765 141 HOH HOH . G 5 HOH A 266 766 139 HOH HOH . G 5 HOH A 267 767 188 HOH HOH . G 5 HOH A 268 768 73 HOH HOH . G 5 HOH A 269 769 131 HOH HOH . G 5 HOH A 270 770 99 HOH HOH . G 5 HOH A 271 771 246 HOH HOH . G 5 HOH A 272 772 108 HOH HOH . G 5 HOH A 273 773 140 HOH HOH . G 5 HOH A 274 774 47 HOH HOH . G 5 HOH A 275 775 125 HOH HOH . G 5 HOH A 276 776 252 HOH HOH . G 5 HOH A 277 777 265 HOH HOH . G 5 HOH A 278 778 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 20.835 -15.603 5.234 1 68.72 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 22.213 -15.187 5.652 1 53.38 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 20.844 -16.314 3.564 1 64.27 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 20.357 -17.068 6.192 1 61.74 ? C2 DMS 403 A 1 HETATM 5 H H11 DMS . . . D 3 19.874 -16.665 3.323 1 77.13 ? H11 DMS 403 A 1 HETATM 6 H H12 DMS . . . D 3 21.134 -15.573 2.865 1 77.13 ? H12 DMS 403 A 1 HETATM 7 H H13 DMS . . . D 3 21.53 -17.12 3.526 1 77.13 ? H13 DMS 403 A 1 HETATM 8 H H21 DMS . . . D 3 20.27 -16.809 7.215 1 74.09 ? H21 DMS 403 A 1 HETATM 9 H H22 DMS . . . D 3 19.428 -17.433 5.84 1 74.09 ? H22 DMS 403 A 1 HETATM 10 H H23 DMS . . . D 3 21.096 -17.819 6.08 1 74.09 ? H23 DMS 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #