data_7AQJ # _model_server_result.job_id 1Ah9URlpLmkl9tehDanp7w _model_server_result.datetime_utc '2024-11-07 18:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7AQJ # _exptl.entry_id 7AQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.264 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Triglycidyl isocyanurate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.295 _cell.angle_gamma 90 _cell.entry_id 7AQJ _cell.length_a 113.661 _cell.length_b 53.75 _cell.length_c 44.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C06 _struct_conn.ptnr2_label_comp_id S7H _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id S7H _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.755 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H15 N3 O6' _chem_comp.formula_weight 297.264 _chem_comp.id RV8 _chem_comp.mon_nstd_flag . _chem_comp.name 'Triglycidyl isocyanurate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,3,5-tris[[(2~{S})-oxiran-2-yl]methyl]-1,3,5-triazinane-2,4,6-trione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 O21 RV8 sing 277 n n C20 C19 RV8 sing 278 n n O21 C19 RV8 sing 279 n n C19 C18 RV8 sing 280 n n C18 N17 RV8 sing 281 n n O16 C15 RV8 doub 282 n n C15 N17 RV8 sing 283 n n C15 N10 RV8 sing 284 n n N17 C02 RV8 sing 285 n n C11 N10 RV8 sing 286 n n C11 C12 RV8 sing 287 n n N10 C08 RV8 sing 288 n n C02 O01 RV8 doub 289 n n C02 N03 RV8 sing 290 n n O07 C05 RV8 sing 291 n n O07 C06 RV8 sing 292 n n C08 N03 RV8 sing 293 n n C08 O09 RV8 doub 294 n n N03 C04 RV8 sing 295 n n C12 C13 RV8 sing 296 n n C12 O14 RV8 sing 297 n n C13 O14 RV8 sing 298 n n C05 C04 RV8 sing 299 n n C05 C06 RV8 sing 300 n n C11 H112 RV8 sing 301 n n C11 H111 RV8 sing 302 n n C12 H121 RV8 sing 303 n n C13 H131 RV8 sing 304 n n C13 H132 RV8 sing 305 n n C18 H182 RV8 sing 306 n n C18 H181 RV8 sing 307 n n C19 H191 RV8 sing 308 n n C20 H201 RV8 sing 309 n n C20 H202 RV8 sing 310 n n C04 H041 RV8 sing 311 n n C04 H042 RV8 sing 312 n n C05 H051 RV8 sing 313 n n C06 H062 RV8 sing 314 n n C06 H061 RV8 sing 315 n n # _atom_sites.entry_id 7AQJ _atom_sites.fract_transf_matrix[1][1] 0.008798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001917 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S7H A 1 401 401 S7H LIG . C 3 RV8 A 1 402 501 RV8 LI2 . D 4 HOH A 1 501 5 HOH HOH . D 4 HOH A 2 502 8 HOH HOH . D 4 HOH A 3 503 16 HOH HOH . D 4 HOH A 4 504 19 HOH HOH . D 4 HOH A 5 505 13 HOH HOH . D 4 HOH A 6 506 1 HOH HOH . D 4 HOH A 7 507 15 HOH HOH . D 4 HOH A 8 508 2 HOH HOH . D 4 HOH A 9 509 11 HOH HOH . D 4 HOH A 10 510 12 HOH HOH . D 4 HOH A 11 511 7 HOH HOH . D 4 HOH A 12 512 4 HOH HOH . D 4 HOH A 13 513 10 HOH HOH . D 4 HOH A 14 514 18 HOH HOH . D 4 HOH A 15 515 14 HOH HOH . D 4 HOH A 16 516 3 HOH HOH . D 4 HOH A 17 517 9 HOH HOH . D 4 HOH A 18 518 6 HOH HOH . D 4 HOH A 19 519 21 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 RV8 . A . C 3 9.884 -0.458 22.562 0.4 57.26 ? N10 RV8 402 A 1 HETATM 2 C C11 RV8 . A . C 3 11.316 -0.103 22.535 0.4 55.4 ? C11 RV8 402 A 1 HETATM 3 C C12 RV8 . A . C 3 11.687 0.603 23.865 0.4 57.23 ? C12 RV8 402 A 1 HETATM 4 C C13 RV8 . A . C 3 11.233 1.967 23.993 0.4 57.79 ? C13 RV8 402 A 1 HETATM 5 C C18 RV8 . A . C 3 6.598 0.331 20.636 0.4 56.3 ? C18 RV8 402 A 1 HETATM 6 C C19 RV8 . A . C 3 6.866 -0.165 19.199 0.4 54.08 ? C19 RV8 402 A 1 HETATM 7 C C20 RV8 . A . C 3 6.118 0.556 18.196 0.4 52.86 ? C20 RV8 402 A 1 HETATM 8 C C02 RV8 . A . C 3 7.047 -1.15 22.645 0.4 59.45 ? C02 RV8 402 A 1 HETATM 9 C C04 RV8 . A . C 3 7.451 -2.636 24.664 0.4 58.8 ? C04 RV8 402 A 1 HETATM 10 C C05 RV8 . A . C 3 7.523 -4.1 24.186 0.4 55.18 ? C05 RV8 402 A 1 HETATM 11 C C06 RV8 . A . C 3 6.592 -4.971 24.857 0.4 55.45 ? C06 RV8 402 A 1 HETATM 12 C C08 RV8 . A . C 3 9.39 -1.376 23.591 0.4 58.7 ? C08 RV8 402 A 1 HETATM 13 C C15 RV8 . A . C 3 8.965 0.113 21.576 0.4 55.9 ? C15 RV8 402 A 1 HETATM 14 N N03 RV8 . A . C 3 7.966 -1.721 23.628 0.4 58.82 ? N03 RV8 402 A 1 HETATM 15 N N17 RV8 . A . C 3 7.546 -0.24 21.614 0.4 58.63 ? N17 RV8 402 A 1 HETATM 16 O O01 RV8 . A . C 3 5.89 -1.432 22.681 0.4 60.63 ? O01 RV8 402 A 1 HETATM 17 O O07 RV8 . A . C 3 6.37 -4.597 23.475 0.4 53.26 ? O07 RV8 402 A 1 HETATM 18 O O09 RV8 . A . C 3 10.145 -1.833 24.398 0.4 58.61 ? O09 RV8 402 A 1 HETATM 19 O O14 RV8 . A . C 3 10.599 0.922 24.765 0.4 59.9 ? O14 RV8 402 A 1 HETATM 20 O O16 RV8 . A . C 3 9.371 0.861 20.742 0.4 53.41 ? O16 RV8 402 A 1 HETATM 21 O O21 RV8 . A . C 3 7.549 0.737 18.3 0.4 52.07 ? O21 RV8 402 A 1 HETATM 22 H H112 RV8 . A . C 3 11.489 0.494 21.79 0.4 66.63 ? H112 RV8 402 A 1 HETATM 23 H H111 RV8 . A . C 3 11.849 -0.908 22.434 0.4 66.63 ? H111 RV8 402 A 1 HETATM 24 H H121 RV8 . A . C 3 12.524 0.391 24.306 0.4 68.82 ? H121 RV8 402 A 1 HETATM 25 H H131 RV8 . A . C 3 10.716 2.307 23.246 0.4 69.5 ? H131 RV8 402 A 1 HETATM 26 H H132 RV8 . A . C 3 11.818 2.558 24.491 0.4 69.5 ? H132 RV8 402 A 1 HETATM 27 H H182 RV8 . A . C 3 5.697 0.077 20.89 0.4 67.71 ? H182 RV8 402 A 1 HETATM 28 H H181 RV8 . A . C 3 6.678 1.298 20.652 0.4 67.71 ? H181 RV8 402 A 1 HETATM 29 H H191 RV8 . A . C 3 7.06 -1.101 19.031 0.4 65.05 ? H191 RV8 402 A 1 HETATM 30 H H201 RV8 . A . C 3 5.816 0.029 17.439 0.4 63.58 ? H201 RV8 402 A 1 HETATM 31 H H202 RV8 . A . C 3 5.577 1.291 18.524 0.4 63.58 ? H202 RV8 402 A 1 HETATM 32 H H041 RV8 . A . C 3 6.527 -2.41 24.857 0.4 70.72 ? H041 RV8 402 A 1 HETATM 33 H H042 RV8 . A . C 3 7.983 -2.537 25.469 0.4 70.72 ? H042 RV8 402 A 1 HETATM 34 H H051 RV8 . A . C 3 8.367 -4.486 23.903 0.4 66.37 ? H051 RV8 402 A 1 HETATM 35 H H062 RV8 . A . C 3 6.898 -5.88 25.001 0.4 66.69 ? H062 RV8 402 A 1 HETATM 36 H H061 RV8 . A . C 3 6.01 -4.543 25.504 0.4 66.69 ? H061 RV8 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #