data_7AQQ
#
_model_server_result.job_id            8t_71U4DOqzHDLfIPR0JKg 
_model_server_result.datetime_utc      '2025-03-06 09:12:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7aqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":401}' 
#
_entry.id    7AQQ 
#
_exptl.entry_id    7AQQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              795.226 
_entity.id                          22 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Ubiquinone-9 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AQQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      22 
_struct_asym.id                             V 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 G SG CYS 336 N CYS 336 1_555 G SG CYS 420 N CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 N SG CYS 24 e CYS 24 1_555 N SG CYS 34 e CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 H NE2 HIS 83 O HIS 83 1_555 Z FE FE . O FE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc2 H SG CYS 91 O CYS 91 1_555 Z FE FE . O FE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc3 H SG CYS 95 O CYS 95 1_555 Z FE FE . O FE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 H SG CYS 135 O CYS 135 1_555 Z FE FE . O FE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 T NE2 HIS 135 y HIS 135 1_555 BA ZN ZN . y ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 BA ZN ZN . y ZN 301 1_555 U NE2 HIS 130 z HIS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc7 BA ZN ZN . y ZN 301 1_555 U OH TYR 207 z TYR 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
#
_chem_comp.formula           'C54 H82 O4' 
_chem_comp.formula_weight    795.226 
_chem_comp.id                UQ9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Ubiquinone-9 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2,3-dimethoxy-5-methyl-6-[(2E,6E,10E,14Z,18E,22E,26E,30Z)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18 ,22,26,30,34-nonaen-1-yl]cyclohexa-2,5-diene-1,4-dione' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C51 C49 UQ9 sing 1117 n n 
C51 H51 UQ9 sing 1118 n n 
C51 H51A UQ9 sing 1119 n n 
C51 H51B UQ9 sing 1120 n n 
C49 C50 UQ9 sing 1121 n n 
C49 C48 UQ9 doub 1122 n n 
C50 H50 UQ9 sing 1123 n n 
C50 H50A UQ9 sing 1124 n n 
C50 H50B UQ9 sing 1125 n n 
C48 C47 UQ9 sing 1126 n n 
C48 H48 UQ9 sing 1127 n n 
C47 C46 UQ9 sing 1128 n n 
C47 H47 UQ9 sing 1129 n n 
C47 H47A UQ9 sing 1130 n n 
C46 C44 UQ9 sing 1131 n n 
C46 H46 UQ9 sing 1132 n n 
C46 H46A UQ9 sing 1133 n n 
C44 C43 UQ9 doub 1134 z n 
C44 C45 UQ9 sing 1135 n n 
C45 H45 UQ9 sing 1136 n n 
C45 H45A UQ9 sing 1137 n n 
C45 H45B UQ9 sing 1138 n n 
C42 C43 UQ9 sing 1139 n n 
C43 H43 UQ9 sing 1140 n n 
C42 C41 UQ9 sing 1141 n n 
C42 H42 UQ9 sing 1142 n n 
C42 H42A UQ9 sing 1143 n n 
C41 C39 UQ9 sing 1144 n n 
C41 H41 UQ9 sing 1145 n n 
C41 H41A UQ9 sing 1146 n n 
C40 C39 UQ9 sing 1147 e n 
C39 C38 UQ9 doub 1148 n n 
C40 H40 UQ9 sing 1149 n n 
C40 H40A UQ9 sing 1150 n n 
C40 H40B UQ9 sing 1151 n n 
C38 C37 UQ9 sing 1152 n n 
C38 H38 UQ9 sing 1153 n n 
C37 C36 UQ9 sing 1154 n n 
C37 H37 UQ9 sing 1155 n n 
C37 H37A UQ9 sing 1156 n n 
C34 C36 UQ9 sing 1157 n n 
C36 H36 UQ9 sing 1158 n n 
C36 H36A UQ9 sing 1159 n n 
C33 C34 UQ9 doub 1160 n n 
C34 C35 UQ9 sing 1161 n n 
C35 H35 UQ9 sing 1162 n n 
C35 H35A UQ9 sing 1163 n n 
C35 H35B UQ9 sing 1164 e n 
C32 C33 UQ9 sing 1165 n n 
C33 H33 UQ9 sing 1166 n n 
C32 C31 UQ9 sing 1167 n n 
C32 H32 UQ9 sing 1168 n n 
C32 H32A UQ9 sing 1169 n n 
C29 C31 UQ9 sing 1170 n n 
C31 H31 UQ9 sing 1171 n n 
C31 H31A UQ9 sing 1172 n n 
C30 C29 UQ9 sing 1173 e n 
C29 C28 UQ9 doub 1174 n n 
C30 H30 UQ9 sing 1175 n n 
C30 H30A UQ9 sing 1176 n n 
C30 H30B UQ9 sing 1177 n n 
C27 C28 UQ9 sing 1178 n n 
C28 H28 UQ9 sing 1179 n n 
C27 C26 UQ9 sing 1180 n n 
C27 H27 UQ9 sing 1181 n n 
C27 H27A UQ9 sing 1182 n n 
C24 C26 UQ9 sing 1183 n n 
C26 H26 UQ9 sing 1184 n n 
C26 H26A UQ9 sing 1185 n n 
C23 C24 UQ9 doub 1186 n n 
C24 C25 UQ9 sing 1187 n n 
C25 H25 UQ9 sing 1188 n n 
C25 H25A UQ9 sing 1189 n n 
C25 H25B UQ9 sing 1190 z n 
C22 C23 UQ9 sing 1191 n n 
C23 H23 UQ9 sing 1192 n n 
C21 C22 UQ9 sing 1193 n n 
C22 H22 UQ9 sing 1194 n n 
C22 H22A UQ9 sing 1195 n n 
C19 C21 UQ9 sing 1196 n n 
C21 H21 UQ9 sing 1197 n n 
C21 H21A UQ9 sing 1198 n n 
C20 C19 UQ9 sing 1199 e n 
C19 C18 UQ9 doub 1200 n n 
C20 H20 UQ9 sing 1201 n n 
C20 H20A UQ9 sing 1202 n n 
C20 H20B UQ9 sing 1203 n n 
C17 C18 UQ9 sing 1204 n n 
C18 H18 UQ9 sing 1205 n n 
C17 C16 UQ9 sing 1206 n n 
C17 H17 UQ9 sing 1207 n n 
C17 H17A UQ9 sing 1208 n n 
C14 C16 UQ9 sing 1209 n n 
C16 H16 UQ9 sing 1210 n n 
C16 H16A UQ9 sing 1211 n n 
C13 C14 UQ9 doub 1212 n n 
C14 C15 UQ9 sing 1213 n n 
C15 H15 UQ9 sing 1214 n n 
C15 H15A UQ9 sing 1215 n n 
C15 H15B UQ9 sing 1216 e n 
C12 C13 UQ9 sing 1217 n n 
C13 H13 UQ9 sing 1218 n n 
C11 C12 UQ9 sing 1219 n n 
C12 H12 UQ9 sing 1220 n n 
C12 H12A UQ9 sing 1221 n n 
C11 C9 UQ9 sing 1222 n n 
C11 H11 UQ9 sing 1223 n n 
C11 H11A UQ9 sing 1224 n n 
C10 C9 UQ9 sing 1225 e n 
C9 C8 UQ9 doub 1226 n n 
C10 H10 UQ9 sing 1227 n n 
C10 H10A UQ9 sing 1228 n n 
C10 H10B UQ9 sing 1229 n n 
C8 C7 UQ9 sing 1230 n n 
C8 H8 UQ9 sing 1231 n n 
C7 C6 UQ9 sing 1232 n n 
C7 H7 UQ9 sing 1233 n n 
C7 H7A UQ9 sing 1234 n n 
C5 C6 UQ9 sing 1235 n n 
C6 C1 UQ9 doub 1236 n n 
C1 C2 UQ9 sing 1237 n n 
C1 C1M UQ9 sing 1238 n n 
C1M H1M UQ9 sing 1239 n n 
C1M H1MA UQ9 sing 1240 n n 
C1M H1MB UQ9 sing 1241 n n 
C3 C2 UQ9 sing 1242 n n 
C2 O2 UQ9 doub 1243 n n 
C4 C3 UQ9 doub 1244 n n 
C3 O3 UQ9 sing 1245 n n 
O3 C3M UQ9 sing 1246 n n 
C3M H3M UQ9 sing 1247 n n 
C3M H3MA UQ9 sing 1248 n n 
C3M H3MB UQ9 sing 1249 n n 
O4 C4 UQ9 sing 1250 n n 
C5 C4 UQ9 sing 1251 n n 
O4 C4M UQ9 sing 1252 n n 
C4M H4M UQ9 sing 1253 n n 
C4M H4MA UQ9 sing 1254 n n 
C4M H4MB UQ9 sing 1255 n n 
O5 C5 UQ9 doub 1256 n n 
#
_atom_sites.entry_id                     7AQQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 22 UQ9 H 1 401 500 UQ9 UQ9 . 
W 23 PTY H 1 402 1 PTY PTY . 
X 24 LMN M 1 501 7 LMN LMN . 
Y 23 PTY N 1 501 9 PTY PTY . 
Z 25 FE O 1 200 200 FE FE . 
AA 26 PC7 v 1 201 2 PC7 PC7 . 
BA 27 ZN y 1 301 300 ZN ZN . 
CA 28 PGT y 1 302 4 PGT PGT . 
DA 29 PSF z 1 301 5 PSF PSF . 
EA 30 T7X z 1 302 8 T7X T7X . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C28 UQ9 . . . V 22 213.529 225.258 199.522 1 63.35 ? C28 UQ9 401 H 1 
HETATM 2 C C27 UQ9 . . . V 22 212.077 225.235 200.092 1 63.35 ? C27 UQ9 401 H 1 
HETATM 3 C C26 UQ9 . . . V 22 211.725 226.62 200.698 1 63.35 ? C26 UQ9 401 H 1 
HETATM 4 C C24 UQ9 . . . V 22 210.917 226.414 202.013 1 63.35 ? C24 UQ9 401 H 1 
HETATM 5 C C25 UQ9 . . . V 22 209.824 225.329 202.074 1 63.35 ? C25 UQ9 401 H 1 
HETATM 6 C C23 UQ9 . . . V 22 211.173 227.176 203.079 1 63.35 ? C23 UQ9 401 H 1 
HETATM 7 C C22 UQ9 . . . V 22 210.378 226.979 204.397 1 63.35 ? C22 UQ9 401 H 1 
HETATM 8 C C21 UQ9 . . . V 22 210.668 228.135 205.365 1 63.35 ? C21 UQ9 401 H 1 
HETATM 9 C C19 UQ9 . . . V 22 211.861 227.773 206.301 1 63.35 ? C19 UQ9 401 H 1 
HETATM 10 C C20 UQ9 . . . V 22 213.289 227.987 205.821 1 63.35 ? C20 UQ9 401 H 1 
HETATM 11 C C18 UQ9 . . . V 22 211.633 227.274 207.527 1 63.35 ? C18 UQ9 401 H 1 
HETATM 12 C C17 UQ9 . . . V 22 212.838 226.915 208.459 1 63.35 ? C17 UQ9 401 H 1 
HETATM 13 C C16 UQ9 . . . V 22 212.397 226.918 209.947 1 63.35 ? C16 UQ9 401 H 1 
HETATM 14 C C14 UQ9 . . . V 22 213.487 226.199 210.799 1 63.35 ? C14 UQ9 401 H 1 
HETATM 15 C C15 UQ9 . . . V 22 214.951 226.275 210.373 1 63.35 ? C15 UQ9 401 H 1 
HETATM 16 C C13 UQ9 . . . V 22 213.155 225.513 211.899 1 63.35 ? C13 UQ9 401 H 1 
HETATM 17 C C12 UQ9 . . . V 22 214.273 224.805 212.724 1 63.35 ? C12 UQ9 401 H 1 
HETATM 18 C C11 UQ9 . . . V 22 213.842 224.654 214.217 1 63.35 ? C11 UQ9 401 H 1 
HETATM 19 C C9 UQ9 . . . V 22 213.807 223.132 214.571 1 63.35 ? C9 UQ9 401 H 1 
HETATM 20 C C10 UQ9 . . . V 22 213.094 222.159 213.639 1 63.35 ? C10 UQ9 401 H 1 
HETATM 21 C C8 UQ9 . . . V 22 214.395 222.664 215.682 1 63.35 ? C8 UQ9 401 H 1 
HETATM 22 C C7 UQ9 . . . V 22 215.141 223.632 216.653 1 63.35 ? C7 UQ9 401 H 1 
HETATM 23 C C6 UQ9 . . . V 22 215.475 223.025 218.046 1 63.35 ? C6 UQ9 401 H 1 
HETATM 24 C C1 UQ9 . . . V 22 215.694 224.016 219.189 1 63.35 ? C1 UQ9 401 H 1 
HETATM 25 C C1M UQ9 . . . V 22 215.567 225.52 218.916 1 63.35 ? C1M UQ9 401 H 1 
HETATM 26 C C2 UQ9 . . . V 22 216.032 223.537 220.595 1 63.35 ? C2 UQ9 401 H 1 
HETATM 27 O O2 UQ9 . . . V 22 216.193 224.323 221.469 1 63.35 ? O2 UQ9 401 H 1 
HETATM 28 C C3 UQ9 . . . V 22 216.162 222.046 220.872 1 63.35 ? C3 UQ9 401 H 1 
HETATM 29 O O3 UQ9 . . . V 22 216.476 221.601 222.17 1 63.35 ? O3 UQ9 401 H 1 
HETATM 30 C C3M UQ9 . . . V 22 217.848 221.62 222.464 1 63.35 ? C3M UQ9 401 H 1 
HETATM 31 C C4 UQ9 . . . V 22 215.951 221.04 219.733 1 63.35 ? C4 UQ9 401 H 1 
HETATM 32 O O4 UQ9 . . . V 22 216.068 219.671 219.983 1 63.35 ? O4 UQ9 401 H 1 
HETATM 33 C C4M UQ9 . . . V 22 217.347 219.165 219.754 1 63.35 ? C4M UQ9 401 H 1 
HETATM 34 C C5 UQ9 . . . V 22 215.609 221.526 218.321 1 63.35 ? C5 UQ9 401 H 1 
HETATM 35 O O5 UQ9 . . . V 22 215.456 220.713 217.475 1 63.35 ? O5 UQ9 401 H 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#