data_7ARF
#
_model_server_result.job_id            yhlQL0Z8o7HqsU3KGJe9-Q 
_model_server_result.datetime_utc      '2024-11-07 18:52:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7arf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7ARF 
#
_exptl.entry_id    7ARF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              196.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.138 
_cell.angle_gamma         90 
_cell.entry_id            7ARF 
_cell.length_a            113.346 
_cell.length_b            53.757 
_cell.length_c            44.607 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ARF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 144 A SER 144 1_555 A N CSD 145 A CSD 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSD 145 A CSD 145 1_555 A N GLY 146 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A SG CYS 156 A CYS 156 1_555 B S1 RVW . A RVW 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
#
_chem_comp.formula           'C6 H12 O5 S' 
_chem_comp.formula_weight    196.221 
_chem_comp.id                RVW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     thioglucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C6 RVW sing 301 n n 
C6 C3 RVW sing 302 n n 
C3 C1 RVW sing 303 n n 
C3 O1 RVW sing 304 n n 
O2 C1 RVW sing 305 n n 
C1 C2 RVW sing 306 n n 
O1 C5 RVW sing 307 n n 
C5 C4 RVW sing 308 n n 
C5 S1 RVW sing 309 n n 
C2 O3 RVW sing 310 n n 
C2 C4 RVW sing 311 n n 
C4 O4 RVW sing 312 n n 
C4 H9 RVW sing 313 n n 
C5 H10 RVW sing 314 n n 
C6 H11 RVW sing 315 n n 
C6 H12 RVW sing 316 n n 
C1 H6 RVW sing 317 n n 
C2 H7 RVW sing 318 n n 
C3 H8 RVW sing 319 n n 
O2 H2 RVW sing 320 n n 
O3 H3 RVW sing 321 n n 
O4 H4 RVW sing 322 n n 
O5 H5 RVW sing 323 n n 
S1 H1 RVW sing 324 n n 
#
_atom_sites.entry_id                     7ARF 
_atom_sites.fract_transf_matrix[1][1]    0.008823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001898 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RVW A 1 401 401 RVW LIG . 
C 3 DMS A 1 402 501 DMS DMS . 
D 3 DMS A 1 403 601 DMS DMS . 
E 4 CL A 1 404 1 CL CL . 
F 5 HOH A 1 501 37 HOH HOH . 
F 5 HOH A 2 502 57 HOH HOH . 
F 5 HOH A 3 503 43 HOH HOH . 
F 5 HOH A 4 504 79 HOH HOH . 
F 5 HOH A 5 505 71 HOH HOH . 
F 5 HOH A 6 506 80 HOH HOH . 
F 5 HOH A 7 507 40 HOH HOH . 
F 5 HOH A 8 508 55 HOH HOH . 
F 5 HOH A 9 509 51 HOH HOH . 
F 5 HOH A 10 510 96 HOH HOH . 
F 5 HOH A 11 511 52 HOH HOH . 
F 5 HOH A 12 512 36 HOH HOH . 
F 5 HOH A 13 513 31 HOH HOH . 
F 5 HOH A 14 514 46 HOH HOH . 
F 5 HOH A 15 515 27 HOH HOH . 
F 5 HOH A 16 516 100 HOH HOH . 
F 5 HOH A 17 517 76 HOH HOH . 
F 5 HOH A 18 518 88 HOH HOH . 
F 5 HOH A 19 519 33 HOH HOH . 
F 5 HOH A 20 520 14 HOH HOH . 
F 5 HOH A 21 521 63 HOH HOH . 
F 5 HOH A 22 522 99 HOH HOH . 
F 5 HOH A 23 523 66 HOH HOH . 
F 5 HOH A 24 524 23 HOH HOH . 
F 5 HOH A 25 525 10 HOH HOH . 
F 5 HOH A 26 526 41 HOH HOH . 
F 5 HOH A 27 527 74 HOH HOH . 
F 5 HOH A 28 528 16 HOH HOH . 
F 5 HOH A 29 529 8 HOH HOH . 
F 5 HOH A 30 530 48 HOH HOH . 
F 5 HOH A 31 531 42 HOH HOH . 
F 5 HOH A 32 532 84 HOH HOH . 
F 5 HOH A 33 533 22 HOH HOH . 
F 5 HOH A 34 534 6 HOH HOH . 
F 5 HOH A 35 535 44 HOH HOH . 
F 5 HOH A 36 536 18 HOH HOH . 
F 5 HOH A 37 537 35 HOH HOH . 
F 5 HOH A 38 538 17 HOH HOH . 
F 5 HOH A 39 539 5 HOH HOH . 
F 5 HOH A 40 540 15 HOH HOH . 
F 5 HOH A 41 541 2 HOH HOH . 
F 5 HOH A 42 542 1 HOH HOH . 
F 5 HOH A 43 543 11 HOH HOH . 
F 5 HOH A 44 544 4 HOH HOH . 
F 5 HOH A 45 545 49 HOH HOH . 
F 5 HOH A 46 546 73 HOH HOH . 
F 5 HOH A 47 547 7 HOH HOH . 
F 5 HOH A 48 548 98 HOH HOH . 
F 5 HOH A 49 549 28 HOH HOH . 
F 5 HOH A 50 550 30 HOH HOH . 
F 5 HOH A 51 551 12 HOH HOH . 
F 5 HOH A 52 552 32 HOH HOH . 
F 5 HOH A 53 553 20 HOH HOH . 
F 5 HOH A 54 554 24 HOH HOH . 
F 5 HOH A 55 555 21 HOH HOH . 
F 5 HOH A 56 556 45 HOH HOH . 
F 5 HOH A 57 557 13 HOH HOH . 
F 5 HOH A 58 558 87 HOH HOH . 
F 5 HOH A 59 559 26 HOH HOH . 
F 5 HOH A 60 560 9 HOH HOH . 
F 5 HOH A 61 561 101 HOH HOH . 
F 5 HOH A 62 562 56 HOH HOH . 
F 5 HOH A 63 563 59 HOH HOH . 
F 5 HOH A 64 564 29 HOH HOH . 
F 5 HOH A 65 565 54 HOH HOH . 
F 5 HOH A 66 566 3 HOH HOH . 
F 5 HOH A 67 567 92 HOH HOH . 
F 5 HOH A 68 568 103 HOH HOH . 
F 5 HOH A 69 569 53 HOH HOH . 
F 5 HOH A 70 570 64 HOH HOH . 
F 5 HOH A 71 571 39 HOH HOH . 
F 5 HOH A 72 572 19 HOH HOH . 
F 5 HOH A 73 573 75 HOH HOH . 
F 5 HOH A 74 574 65 HOH HOH . 
F 5 HOH A 75 575 102 HOH HOH . 
F 5 HOH A 76 576 47 HOH HOH . 
F 5 HOH A 77 577 25 HOH HOH . 
F 5 HOH A 78 578 62 HOH HOH . 
F 5 HOH A 79 579 89 HOH HOH . 
F 5 HOH A 80 580 34 HOH HOH . 
F 5 HOH A 81 581 67 HOH HOH . 
F 5 HOH A 82 582 93 HOH HOH . 
F 5 HOH A 83 583 68 HOH HOH . 
F 5 HOH A 84 584 97 HOH HOH . 
F 5 HOH A 85 585 77 HOH HOH . 
F 5 HOH A 86 586 90 HOH HOH . 
F 5 HOH A 87 587 61 HOH HOH . 
F 5 HOH A 88 588 78 HOH HOH . 
F 5 HOH A 89 589 81 HOH HOH . 
F 5 HOH A 90 590 38 HOH HOH . 
F 5 HOH A 91 591 50 HOH HOH . 
F 5 HOH A 92 592 69 HOH HOH . 
F 5 HOH A 93 593 82 HOH HOH . 
F 5 HOH A 94 594 91 HOH HOH . 
F 5 HOH A 95 595 86 HOH HOH . 
F 5 HOH A 96 596 83 HOH HOH . 
F 5 HOH A 97 597 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RVW . . . B 2 18.566 -16.17 -3.887 1 71.48 ? C4 RVW 401 A 1 
HETATM 2 C C5 RVW . . . B 2 17.795 -14.956 -4.369 1 66.83 ? C5 RVW 401 A 1 
HETATM 3 C C6 RVW . . . B 2 16.741 -16.082 -7.743 1 72.98 ? C6 RVW 401 A 1 
HETATM 4 C C1 RVW . . . B 2 17.67 -17.474 -5.862 1 77.29 ? C1 RVW 401 A 1 
HETATM 5 C C2 RVW . . . B 2 17.903 -17.468 -4.348 1 75.09 ? C2 RVW 401 A 1 
HETATM 6 C C3 RVW . . . B 2 16.932 -16.19 -6.236 1 72.84 ? C3 RVW 401 A 1 
HETATM 7 O O1 RVW . . . B 2 17.672 -15.034 -5.792 1 74.53 ? O1 RVW 401 A 1 
HETATM 8 O O2 RVW . . . B 2 16.923 -18.614 -6.229 1 80.87 ? O2 RVW 401 A 1 
HETATM 9 O O3 RVW . . . B 2 18.682 -18.59 -3.951 1 74.11 ? O3 RVW 401 A 1 
HETATM 10 O O4 RVW . . . B 2 18.643 -16.17 -2.465 1 63.46 ? O4 RVW 401 A 1 
HETATM 11 O O5 RVW . . . B 2 16.031 -14.9 -8.103 1 77.31 ? O5 RVW 401 A 1 
HETATM 12 S S1 RVW . . . B 2 16.173 -14.737 -3.592 1 56.97 ? S1 RVW 401 A 1 
HETATM 13 H H9 RVW . . . B 2 19.482 -16.14 -4.263 1 86 ? H9 RVW 401 A 1 
HETATM 14 H H10 RVW . . . B 2 18.305 -14.142 -4.098 1 80.42 ? H10 RVW 401 A 1 
HETATM 15 H H11 RVW . . . B 2 17.618 -16.077 -8.18 1 87.79 ? H11 RVW 401 A 1 
HETATM 16 H H12 RVW . . . B 2 16.245 -16.865 -8.062 1 87.79 ? H12 RVW 401 A 1 
HETATM 17 H H6 RVW . . . B 2 18.523 -17.513 -6.353 1 92.97 ? H6 RVW 401 A 1 
HETATM 18 H H7 RVW . . . B 2 17.02 -17.539 -3.903 1 90.33 ? H7 RVW 401 A 1 
HETATM 19 H H8 RVW . . . B 2 16.054 -16.164 -5.782 1 87.63 ? H8 RVW 401 A 1 
HETATM 20 H H2 RVW . . . B 2 16.841 -18.639 -7.066 1 97.27 ? H2 RVW 401 A 1 
HETATM 21 H H3 RVW . . . B 2 18.275 -19.294 -4.165 1 89.15 ? H3 RVW 401 A 1 
HETATM 22 H H4 RVW . . . B 2 17.889 -16.291 -2.113 1 76.38 ? H4 RVW 401 A 1 
HETATM 23 H H5 RVW . . . B 2 16.459 -14.22 -7.833 1 93 ? H5 RVW 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           23 
#