data_7ARO # _model_server_result.job_id 5NsSDGDroK0JHY9aUTSe4g _model_server_result.datetime_utc '2025-01-10 20:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7ARO # _exptl.entry_id 7ARO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.382 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-6-(1~{H}-imidazol-2-ylmethylsulfanyl)-4-phenyl-pyridine-3,5-dicarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ARO _cell.length_a 39.541 _cell.length_b 181.027 _cell.length_c 140.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ARO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_577 x,-y+2,-z+2 1 0 0 0 -1 0 0 0 -1 0 362.054 281.706 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 H NA NA . A NA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 H NA NA . A NA 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'C17 H12 N6 S' _chem_comp.formula_weight 332.382 _chem_comp.id RVZ _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-6-(1~{H}-imidazol-2-ylmethylsulfanyl)-4-phenyl-pyridine-3,5-dicarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 RVZ doub 407 n y C21 N20 RVZ sing 408 n y C22 N23 RVZ sing 409 n y N20 C19 RVZ sing 410 n y N23 C19 RVZ doub 411 n y C19 C18 RVZ sing 412 n n C18 S17 RVZ sing 413 n n S17 C16 RVZ sing 414 n n N15 C14 RVZ trip 415 n n C14 C13 RVZ sing 416 n n C16 C13 RVZ doub 417 n y C16 N24 RVZ sing 418 n y C08 C09 RVZ doub 419 n y C08 C07 RVZ sing 420 n y C13 C06 RVZ sing 421 n y N24 C02 RVZ doub 422 n y C09 C10 RVZ sing 423 n y C02 C03 RVZ sing 424 n y C02 N01 RVZ sing 425 n n C06 C03 RVZ doub 426 n y C06 C07 RVZ sing 427 n n C03 C04 RVZ sing 428 n n C07 C12 RVZ doub 429 n y C10 C11 RVZ doub 430 n y C04 N05 RVZ trip 431 n n C12 C11 RVZ sing 432 n y C10 H1 RVZ sing 433 n n C21 H2 RVZ sing 434 n n C22 H3 RVZ sing 435 n n C08 H4 RVZ sing 436 n n C09 H5 RVZ sing 437 n n C11 H6 RVZ sing 438 n n C12 H7 RVZ sing 439 n n C18 H8 RVZ sing 440 n n C18 H9 RVZ sing 441 n n N01 H10 RVZ sing 442 n n N01 H11 RVZ sing 443 n n N20 H12 RVZ sing 444 n n # _atom_sites.entry_id 7ARO _atom_sites.fract_transf_matrix[1][1] 0.02529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RVZ A 1 1201 1201 RVZ LIG . C 3 OLA A 1 1202 1 OLA OLA . D 3 OLA A 1 1203 2 OLA OLA . E 3 OLA A 1 1204 3 OLA OLA . F 3 OLA A 1 1205 4 OLA OLA . G 4 CLR A 1 1206 5 CLR CLR . H 5 NA A 1 1207 6 NA NA . I 6 HOH A 1 1301 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RVZ . . . B 2 21.615 178.722 159.314 1 60.42 ? C10 RVZ 1201 A 1 HETATM 2 C C13 RVZ . . . B 2 22.505 173.854 157.851 1 61.58 ? C13 RVZ 1201 A 1 HETATM 3 C C21 RVZ . . . B 2 21.175 170.896 153.227 1 67.05 ? C21 RVZ 1201 A 1 HETATM 4 C C22 RVZ . . . B 2 20.727 169.667 153.591 1 67.06 ? C22 RVZ 1201 A 1 HETATM 5 C C02 RVZ . . . B 2 20.257 172.47 158.42 1 61.24 ? C02 RVZ 1201 A 1 HETATM 6 C C03 RVZ . . . B 2 20.299 173.808 158.737 1 60.83 ? C03 RVZ 1201 A 1 HETATM 7 C C04 RVZ . . . B 2 19.083 174.448 159.39 1 60.63 ? C04 RVZ 1201 A 1 HETATM 8 C C06 RVZ . . . B 2 21.457 174.524 158.473 1 60.92 ? C06 RVZ 1201 A 1 HETATM 9 C C07 RVZ . . . B 2 21.531 176.015 158.785 1 60.54 ? C07 RVZ 1201 A 1 HETATM 10 C C08 RVZ . . . B 2 22.03 176.897 157.84 1 60.44 ? C08 RVZ 1201 A 1 HETATM 11 C C09 RVZ . . . B 2 22.103 178.249 158.111 1 60.43 ? C09 RVZ 1201 A 1 HETATM 12 C C11 RVZ . . . B 2 21.086 177.85 160.249 1 60.4 ? C11 RVZ 1201 A 1 HETATM 13 C C12 RVZ . . . B 2 21.058 176.495 159.993 1 60.41 ? C12 RVZ 1201 A 1 HETATM 14 C C14 RVZ . . . B 2 23.822 174.565 157.531 1 61.33 ? C14 RVZ 1201 A 1 HETATM 15 C C16 RVZ . . . B 2 22.381 172.505 157.553 1 62.55 ? C16 RVZ 1201 A 1 HETATM 16 C C18 RVZ . . . B 2 23.44 170.099 155.975 1 65.76 ? C18 RVZ 1201 A 1 HETATM 17 C C19 RVZ . . . B 2 22.384 170.201 154.867 1 66.69 ? C19 RVZ 1201 A 1 HETATM 18 N N01 RVZ . . . B 2 19.04 171.767 158.767 1 61.21 ? N01 RVZ 1201 A 1 HETATM 19 N N05 RVZ . . . B 2 18.2 174.951 159.882 1 60.58 ? N05 RVZ 1201 A 1 HETATM 20 N N15 RVZ . . . B 2 24.793 175.092 157.296 1 61.27 ? N15 RVZ 1201 A 1 HETATM 21 N N20 RVZ . . . B 2 22.209 171.209 153.991 1 66.97 ? N20 RVZ 1201 A 1 HETATM 22 N N23 RVZ . . . B 2 21.464 169.266 154.595 1 66.99 ? N23 RVZ 1201 A 1 HETATM 23 N N24 RVZ . . . B 2 21.281 171.837 157.868 1 61.81 ? N24 RVZ 1201 A 1 HETATM 24 S S17 RVZ . . . B 2 23.813 171.691 156.785 1 64.35 ? S17 RVZ 1201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #