data_7ARZ # _model_server_result.job_id 0GKQEk2b7b3XsK7r1U-DZQ _model_server_result.datetime_utc '2025-03-06 07:18:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7arz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7ARZ # _exptl.entry_id 7ARZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ARZ _cell.length_a 68.36 _cell.length_b 68.36 _cell.length_c 203.44 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ARZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 67.813333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 239 n n PA O2A NAD sing 240 n n PA O5B NAD sing 241 n n PA O3 NAD sing 242 n n O2A HOA2 NAD sing 243 n n O5B C5B NAD sing 244 n n C5B C4B NAD sing 245 n n C5B H51A NAD sing 246 n n C5B H52A NAD sing 247 n n C4B O4B NAD sing 248 n n C4B C3B NAD sing 249 n n C4B H4B NAD sing 250 n n O4B C1B NAD sing 251 n n C3B O3B NAD sing 252 n n C3B C2B NAD sing 253 n n C3B H3B NAD sing 254 n n O3B HO3A NAD sing 255 n n C2B O2B NAD sing 256 n n C2B C1B NAD sing 257 n n C2B H2B NAD sing 258 n n O2B HO2A NAD sing 259 n n C1B N9A NAD sing 260 n n C1B H1B NAD sing 261 n n N9A C8A NAD sing 262 n y N9A C4A NAD sing 263 n y C8A N7A NAD doub 264 n y C8A H8A NAD sing 265 n n N7A C5A NAD sing 266 n y C5A C6A NAD sing 267 n y C5A C4A NAD doub 268 n y C6A N6A NAD sing 269 n n C6A N1A NAD doub 270 n y N6A H61A NAD sing 271 n n N6A H62A NAD sing 272 n n N1A C2A NAD sing 273 n y C2A N3A NAD doub 274 n y C2A H2A NAD sing 275 n n N3A C4A NAD sing 276 n y O3 PN NAD sing 277 n n PN O1N NAD doub 278 n n PN O2N NAD sing 279 n n PN O5D NAD sing 280 n n O5D C5D NAD sing 281 n n C5D C4D NAD sing 282 n n C5D H51N NAD sing 283 n n C5D H52N NAD sing 284 n n C4D O4D NAD sing 285 n n C4D C3D NAD sing 286 n n C4D H4D NAD sing 287 n n O4D C1D NAD sing 288 n n C3D O3D NAD sing 289 n n C3D C2D NAD sing 290 n n C3D H3D NAD sing 291 n n O3D HO3N NAD sing 292 n n C2D O2D NAD sing 293 n n C2D C1D NAD sing 294 n n C2D H2D NAD sing 295 n n O2D HO2N NAD sing 296 n n C1D N1N NAD sing 297 n n C1D H1D NAD sing 298 n n N1N C2N NAD sing 299 n y N1N C6N NAD doub 300 n y C2N C3N NAD doub 301 n y C2N H2N NAD sing 302 n n C3N C7N NAD sing 303 n n C3N C4N NAD sing 304 n y C7N O7N NAD doub 305 n n C7N N7N NAD sing 306 n n N7N H71N NAD sing 307 n n N7N H72N NAD sing 308 n n C4N C5N NAD doub 309 n y C4N H4N NAD sing 310 n n C5N C6N NAD sing 311 n y C5N H5N NAD sing 312 n n C6N H6N NAD sing 313 n n # _atom_sites.entry_id 7ARZ _atom_sites.fract_transf_matrix[1][1] 0.014628 _atom_sites.fract_transf_matrix[1][2] 0.008446 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 501 394 NAD NAD . C 3 AZI A 1 502 1 AZI AZI . D 3 AZI A 1 503 2 AZI AZI . E 4 HOH A 1 601 24 HOH HOH . E 4 HOH A 2 602 49 HOH HOH . E 4 HOH A 3 603 21 HOH HOH . E 4 HOH A 4 604 158 HOH HOH . E 4 HOH A 5 605 26 HOH HOH . E 4 HOH A 6 606 99 HOH HOH . E 4 HOH A 7 607 5 HOH HOH . E 4 HOH A 8 608 32 HOH HOH . E 4 HOH A 9 609 61 HOH HOH . E 4 HOH A 10 610 13 HOH HOH . E 4 HOH A 11 611 55 HOH HOH . E 4 HOH A 12 612 37 HOH HOH . E 4 HOH A 13 613 7 HOH HOH . E 4 HOH A 14 614 156 HOH HOH . E 4 HOH A 15 615 90 HOH HOH . E 4 HOH A 16 616 85 HOH HOH . E 4 HOH A 17 617 8 HOH HOH . E 4 HOH A 18 618 163 HOH HOH . E 4 HOH A 19 619 23 HOH HOH . E 4 HOH A 20 620 12 HOH HOH . E 4 HOH A 21 621 35 HOH HOH . E 4 HOH A 22 622 33 HOH HOH . E 4 HOH A 23 623 38 HOH HOH . E 4 HOH A 24 624 11 HOH HOH . E 4 HOH A 25 625 53 HOH HOH . E 4 HOH A 26 626 89 HOH HOH . E 4 HOH A 27 627 14 HOH HOH . E 4 HOH A 28 628 138 HOH HOH . E 4 HOH A 29 629 75 HOH HOH . E 4 HOH A 30 630 66 HOH HOH . E 4 HOH A 31 631 97 HOH HOH . E 4 HOH A 32 632 118 HOH HOH . E 4 HOH A 33 633 58 HOH HOH . E 4 HOH A 34 634 102 HOH HOH . E 4 HOH A 35 635 81 HOH HOH . E 4 HOH A 36 636 110 HOH HOH . E 4 HOH A 37 637 2 HOH HOH . E 4 HOH A 38 638 41 HOH HOH . E 4 HOH A 39 639 10 HOH HOH . E 4 HOH A 40 640 74 HOH HOH . E 4 HOH A 41 641 17 HOH HOH . E 4 HOH A 42 642 69 HOH HOH . E 4 HOH A 43 643 59 HOH HOH . E 4 HOH A 44 644 1 HOH HOH . E 4 HOH A 45 645 48 HOH HOH . E 4 HOH A 46 646 63 HOH HOH . E 4 HOH A 47 647 114 HOH HOH . E 4 HOH A 48 648 52 HOH HOH . E 4 HOH A 49 649 67 HOH HOH . E 4 HOH A 50 650 70 HOH HOH . E 4 HOH A 51 651 22 HOH HOH . E 4 HOH A 52 652 3 HOH HOH . E 4 HOH A 53 653 15 HOH HOH . E 4 HOH A 54 654 60 HOH HOH . E 4 HOH A 55 655 47 HOH HOH . E 4 HOH A 56 656 65 HOH HOH . E 4 HOH A 57 657 177 HOH HOH . E 4 HOH A 58 658 93 HOH HOH . E 4 HOH A 59 659 6 HOH HOH . E 4 HOH A 60 660 50 HOH HOH . E 4 HOH A 61 661 46 HOH HOH . E 4 HOH A 62 662 92 HOH HOH . E 4 HOH A 63 663 54 HOH HOH . E 4 HOH A 64 664 77 HOH HOH . E 4 HOH A 65 665 87 HOH HOH . E 4 HOH A 66 666 96 HOH HOH . E 4 HOH A 67 667 176 HOH HOH . E 4 HOH A 68 668 51 HOH HOH . E 4 HOH A 69 669 16 HOH HOH . E 4 HOH A 70 670 170 HOH HOH . E 4 HOH A 71 671 78 HOH HOH . E 4 HOH A 72 672 160 HOH HOH . E 4 HOH A 73 673 106 HOH HOH . E 4 HOH A 74 674 57 HOH HOH . E 4 HOH A 75 675 62 HOH HOH . E 4 HOH A 76 676 19 HOH HOH . E 4 HOH A 77 677 56 HOH HOH . E 4 HOH A 78 678 173 HOH HOH . E 4 HOH A 79 679 123 HOH HOH . E 4 HOH A 80 680 131 HOH HOH . E 4 HOH A 81 681 36 HOH HOH . E 4 HOH A 82 682 137 HOH HOH . E 4 HOH A 83 683 136 HOH HOH . E 4 HOH A 84 684 9 HOH HOH . E 4 HOH A 85 685 4 HOH HOH . E 4 HOH A 86 686 101 HOH HOH . E 4 HOH A 87 687 18 HOH HOH . E 4 HOH A 88 688 64 HOH HOH . E 4 HOH A 89 689 44 HOH HOH . E 4 HOH A 90 690 134 HOH HOH . E 4 HOH A 91 691 95 HOH HOH . E 4 HOH A 92 692 116 HOH HOH . E 4 HOH A 93 693 25 HOH HOH . E 4 HOH A 94 694 115 HOH HOH . E 4 HOH A 95 695 43 HOH HOH . E 4 HOH A 96 696 112 HOH HOH . E 4 HOH A 97 697 117 HOH HOH . E 4 HOH A 98 698 103 HOH HOH . E 4 HOH A 99 699 104 HOH HOH . E 4 HOH A 100 700 121 HOH HOH . E 4 HOH A 101 701 39 HOH HOH . E 4 HOH A 102 702 127 HOH HOH . E 4 HOH A 103 703 82 HOH HOH . E 4 HOH A 104 704 28 HOH HOH . E 4 HOH A 105 705 100 HOH HOH . E 4 HOH A 106 706 174 HOH HOH . E 4 HOH A 107 707 80 HOH HOH . E 4 HOH A 108 708 162 HOH HOH . E 4 HOH A 109 709 86 HOH HOH . E 4 HOH A 110 710 175 HOH HOH . E 4 HOH A 111 711 109 HOH HOH . E 4 HOH A 112 712 88 HOH HOH . E 4 HOH A 113 713 31 HOH HOH . E 4 HOH A 114 714 40 HOH HOH . E 4 HOH A 115 715 72 HOH HOH . E 4 HOH A 116 716 153 HOH HOH . E 4 HOH A 117 717 108 HOH HOH . E 4 HOH A 118 718 178 HOH HOH . E 4 HOH A 119 719 94 HOH HOH . E 4 HOH A 120 720 113 HOH HOH . E 4 HOH A 121 721 105 HOH HOH . E 4 HOH A 122 722 120 HOH HOH . E 4 HOH A 123 723 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 8.744 -1.232 13.273 1 46.28 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . B 2 8.799 -1.343 11.78 1 53.06 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . B 2 7.572 -1.836 13.975 1 44.18 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . B 2 8.83 0.312 13.715 1 51.09 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . B 2 9.493 1.338 12.94 1 51.14 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . B 2 8.619 2.569 12.895 1 51.26 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . B 2 9.376 3.64 12.277 1 53.5 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . B 2 7.309 2.452 12.091 1 54.18 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . B 2 6.184 2.689 12.933 1 53.02 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . B 2 7.474 3.46 10.938 1 50.83 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . B 2 6.315 4.183 10.579 1 54.81 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . B 2 8.482 4.429 11.531 1 54.72 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . B 2 9.24 5.204 10.559 1 53.12 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . B 2 10.103 4.765 9.587 1 56.96 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . B 2 10.671 5.733 8.907 1 55.37 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . B 2 10.15 6.885 9.481 1 59.43 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . B 2 10.351 8.251 9.209 1 56 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . B 2 11.165 8.698 8.255 1 58.99 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . B 2 9.68 9.141 9.976 1 54.56 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . B 2 8.856 8.688 10.932 1 61.06 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . B 2 8.582 7.433 11.279 1 58.85 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . B 2 9.273 6.572 10.506 1 59.22 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . B 2 10.136 -1.833 13.791 1 46.87 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . B 2 10.696 -2.107 15.246 1 46.19 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . B 2 10.083 -1.049 16.1 1 40.73 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . B 2 10.485 -3.529 15.605 1 43.7 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . B 2 12.267 -1.898 15.059 1 42.4 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . B 2 12.818 -0.597 14.799 1 41.91 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . B 2 14.265 -0.747 14.408 1 38.42 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . B 2 15.017 -1.113 15.57 1 40 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . B 2 14.618 -1.829 13.382 1 38.9 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . B 2 14.39 -1.38 12.049 1 39.63 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . B 2 16.101 -2.055 13.698 1 39.61 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . B 2 16.863 -1.163 12.906 1 43.21 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . B 2 16.258 -1.721 15.189 1 39.79 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . B 2 16.463 -2.907 16.076 1 36.68 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . B 2 17.626 -3.102 16.812 1 38.51 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . B 2 17.764 -4.204 17.661 1 36.99 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . B 2 18.978 -4.397 18.543 1 43.04 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . B 2 19.415 -5.534 18.759 1 38.26 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . B 2 19.539 -3.311 19.062 1 41.52 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . B 2 16.75 -5.143 17.673 1 37.58 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . B 2 15.543 -4.848 17.077 1 35.86 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . B 2 15.456 -3.802 16.192 1 38.09 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #