data_7ATG
#
_model_server_result.job_id            16Rp8WSZwgEV3nXq2GJMRQ 
_model_server_result.datetime_utc      '2025-02-05 13:52:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7atg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    7ATG 
#
_exptl.entry_id    7ATG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.167 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            4-azaniumylbutylazanium 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ATG 
_cell.length_a            17.97 
_cell.length_b            31.02 
_cell.length_c            43.86 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ATG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OP1 DG 6 A DG 6 1_555 C K K . A K 101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc2 A O5' DG 6 A DG 6 1_555 C K K . A K 101 1_555 ? A ? ? A ? ? ? ? ? ? ? 3.047 ? 
metalc ? metalc3 C K K . A K 101 1_555 E O HOH . A HOH 217 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc4 C K K . A K 101 1_555 E O HOH . A HOH 248 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc5 C K K . A K 101 3_545 B OP1 DC 3 B DC 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.184 ? 
metalc ? metalc6 C K K . A K 101 3_545 B OP2 DC 3 B DC 9 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc7 C K K . A K 101 1_555 F O HOH . B HOH 255 3_555 ? A ? ? ? ? ? ? ? ? ? ? 3.392 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C4 H14 N2 2' 
_chem_comp.formula_weight    90.167 
_chem_comp.id                58I 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              4-azaniumylbutylazanium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Butane-1,4-diyldiammonium;Putrescinium 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 58I sing 1 n n 
C3 C4 58I sing 2 n n 
C3 C2 58I sing 3 n n 
C4 N2 58I sing 4 n n 
C1 C2 58I sing 5 n n 
N2 HN21 58I sing 6 n n 
N2 HN22 58I sing 7 n n 
N2 H3 58I sing 8 n n 
C4 H41 58I sing 9 n n 
C4 H42 58I sing 10 n n 
C3 H31 58I sing 11 n n 
C3 H32 58I sing 12 n n 
C2 H21 58I sing 13 n n 
C2 H22 58I sing 14 n n 
C1 HN11 58I sing 15 n n 
C1 H1 58I sing 16 n n 
N1 H2 58I sing 17 n n 
N1 HN12 58I sing 18 n n 
N1 H14 58I sing 19 n n 
#
_atom_sites.entry_id                     7ATG 
_atom_sites.fract_transf_matrix[1][1]    0.055648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0228 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K A 1 101 1 K K . 
D 3 58I B 1 101 1 58I PUT . 
E 4 HOH A 1 201 79 HOH HOH . 
E 4 HOH A 2 202 94 HOH HOH . 
E 4 HOH A 3 203 48 HOH HOH . 
E 4 HOH A 4 204 15 HOH HOH . 
E 4 HOH A 5 205 93 HOH HOH . 
E 4 HOH A 6 206 100 HOH HOH . 
E 4 HOH A 7 207 104 HOH HOH . 
E 4 HOH A 8 208 83 HOH HOH . 
E 4 HOH A 9 209 86 HOH HOH . 
E 4 HOH A 10 210 98 HOH HOH . 
E 4 HOH A 11 211 97 HOH HOH . 
E 4 HOH A 12 212 40 HOH HOH . 
E 4 HOH A 13 213 66 HOH HOH . 
E 4 HOH A 14 214 84 HOH HOH . 
E 4 HOH A 15 215 21 HOH HOH . 
E 4 HOH A 16 216 38 HOH HOH . 
E 4 HOH A 17 217 109 HOH HOH . 
E 4 HOH A 18 218 37 HOH HOH . 
E 4 HOH A 19 219 16 HOH HOH . 
E 4 HOH A 20 220 18 HOH HOH . 
E 4 HOH A 21 221 69 HOH HOH . 
E 4 HOH A 22 222 20 HOH HOH . 
E 4 HOH A 23 223 12 HOH HOH . 
E 4 HOH A 24 224 34 HOH HOH . 
E 4 HOH A 25 225 120 HOH HOH . 
E 4 HOH A 26 226 46 HOH HOH . 
E 4 HOH A 27 227 3 HOH HOH . 
E 4 HOH A 28 228 65 HOH HOH . 
E 4 HOH A 29 229 58 HOH HOH . 
E 4 HOH A 30 230 63 HOH HOH . 
E 4 HOH A 31 231 81 HOH HOH . 
E 4 HOH A 32 232 36 HOH HOH . 
E 4 HOH A 33 233 19 HOH HOH . 
E 4 HOH A 34 234 2 HOH HOH . 
E 4 HOH A 35 235 49 HOH HOH . 
E 4 HOH A 36 236 80 HOH HOH . 
E 4 HOH A 37 237 4 HOH HOH . 
E 4 HOH A 38 238 75 HOH HOH . 
E 4 HOH A 39 239 51 HOH HOH . 
E 4 HOH A 40 240 68 HOH HOH . 
E 4 HOH A 41 241 91 HOH HOH . 
E 4 HOH A 42 242 105 HOH HOH . 
E 4 HOH A 43 243 43 HOH HOH . 
E 4 HOH A 44 244 28 HOH HOH . 
E 4 HOH A 45 245 116 HOH HOH . 
E 4 HOH A 46 246 73 HOH HOH . 
E 4 HOH A 47 247 26 HOH HOH . 
E 4 HOH A 48 248 110 HOH HOH . 
E 4 HOH A 49 249 111 HOH HOH . 
E 4 HOH A 50 250 117 HOH HOH . 
E 4 HOH A 51 251 61 HOH HOH . 
E 4 HOH A 52 252 29 HOH HOH . 
E 4 HOH A 53 253 99 HOH HOH . 
E 4 HOH A 54 254 121 HOH HOH . 
E 4 HOH A 55 255 50 HOH HOH . 
E 4 HOH A 56 256 108 HOH HOH . 
E 4 HOH A 57 257 25 HOH HOH . 
E 4 HOH A 58 258 60 HOH HOH . 
E 4 HOH A 59 259 59 HOH HOH . 
F 4 HOH B 1 201 27 HOH HOH . 
F 4 HOH B 2 202 7 HOH HOH . 
F 4 HOH B 3 203 56 HOH HOH . 
F 4 HOH B 4 204 103 HOH HOH . 
F 4 HOH B 5 205 72 HOH HOH . 
F 4 HOH B 6 206 13 HOH HOH . 
F 4 HOH B 7 207 85 HOH HOH . 
F 4 HOH B 8 208 17 HOH HOH . 
F 4 HOH B 9 209 8 HOH HOH . 
F 4 HOH B 10 210 1 HOH HOH . 
F 4 HOH B 11 211 32 HOH HOH . 
F 4 HOH B 12 212 2 HOH HOH . 
F 4 HOH B 13 213 10 HOH HOH . 
F 4 HOH B 14 214 71 HOH HOH . 
F 4 HOH B 15 215 87 HOH HOH . 
F 4 HOH B 16 216 57 HOH HOH . 
F 4 HOH B 17 217 23 HOH HOH . 
F 4 HOH B 18 218 53 HOH HOH . 
F 4 HOH B 19 219 5 HOH HOH . 
F 4 HOH B 20 220 31 HOH HOH . 
F 4 HOH B 21 221 6 HOH HOH . 
F 4 HOH B 22 222 88 HOH HOH . 
F 4 HOH B 23 223 64 HOH HOH . 
F 4 HOH B 24 224 44 HOH HOH . 
F 4 HOH B 25 225 9 HOH HOH . 
F 4 HOH B 26 226 62 HOH HOH . 
F 4 HOH B 27 227 5 HOH HOH . 
F 4 HOH B 28 228 11 HOH HOH . 
F 4 HOH B 29 229 101 HOH HOH . 
F 4 HOH B 30 230 2 HOH HOH . 
F 4 HOH B 31 231 74 HOH HOH . 
F 4 HOH B 32 232 118 HOH HOH . 
F 4 HOH B 33 233 35 HOH HOH . 
F 4 HOH B 34 234 3 HOH HOH . 
F 4 HOH B 35 235 89 HOH HOH . 
F 4 HOH B 36 236 67 HOH HOH . 
F 4 HOH B 37 237 78 HOH HOH . 
F 4 HOH B 38 238 47 HOH HOH . 
F 4 HOH B 39 239 70 HOH HOH . 
F 4 HOH B 40 240 54 HOH HOH . 
F 4 HOH B 41 241 42 HOH HOH . 
F 4 HOH B 42 242 96 HOH HOH . 
F 4 HOH B 43 243 107 HOH HOH . 
F 4 HOH B 44 244 102 HOH HOH . 
F 4 HOH B 45 245 82 HOH HOH . 
F 4 HOH B 46 246 45 HOH HOH . 
F 4 HOH B 47 247 77 HOH HOH . 
F 4 HOH B 48 248 14 HOH HOH . 
F 4 HOH B 49 249 55 HOH HOH . 
F 4 HOH B 50 250 30 HOH HOH . 
F 4 HOH B 51 251 41 HOH HOH . 
F 4 HOH B 52 252 33 HOH HOH . 
F 4 HOH B 53 253 22 HOH HOH . 
F 4 HOH B 54 254 106 HOH HOH . 
F 4 HOH B 55 255 92 HOH HOH . 
F 4 HOH B 56 256 24 HOH HOH . 
F 4 HOH B 57 257 6 HOH HOH . 
F 4 HOH B 58 258 90 HOH HOH . 
F 4 HOH B 59 259 4 HOH HOH . 
F 4 HOH B 60 260 76 HOH HOH . 
F 4 HOH B 61 261 39 HOH HOH . 
F 4 HOH B 62 262 7 HOH HOH . 
F 4 HOH B 63 263 52 HOH HOH . 
F 4 HOH B 64 264 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 58I . A . D 3 2.646 -8.569 28.282 0.38 4.35 ? N2 58I 101 B 1 
HETATM 2 C C4 58I . A . D 3 2.194 -8.126 26.928 0.38 4.67 ? C4 58I 101 B 1 
HETATM 3 C C3 58I . A . D 3 0.74 -8.487 26.685 0.38 4.42 ? C3 58I 101 B 1 
HETATM 4 C C2 58I . A . D 3 -0.198 -7.628 27.529 0.38 3.72 ? C2 58I 101 B 1 
HETATM 5 C C1 58I . A . D 3 -1.651 -7.872 27.157 0.38 4.3 ? C1 58I 101 B 1 
HETATM 6 N N1 58I . A . D 3 -1.96 -7.262 25.826 0.38 4 ? N1 58I 101 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#