data_7AUD # _model_server_result.job_id vqkL259rE0BM5rqxEfn-kw _model_server_result.datetime_utc '2024-11-04 22:09:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":1304}' # _entry.id 7AUD # _exptl.entry_id 7AUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.64 _cell.angle_beta 80.18 _cell.angle_gamma 79.22 _cell.entry_id 7AUD _cell.length_a 84.916 _cell.length_b 111.709 _cell.length_c 132.344 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 1 PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 2 PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 3 PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 4 PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 5 PISA 'protein:DNA complex' 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression F,L,IA,JA,KA,LA,WA 1 1 A,G,M,N,O,P,Q,MA,RA,XA 2 1 B,H,R,S,T,U,NA,SA 3 1 C,I,V,W,X,Y,Z,TA 4 1 D,J,AA,BA,CA,DA,OA,UA 5 1 E,K,EA,FA,GA,HA,PA,QA,VA,YA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 U N N ? 6 Y N N ? 6 Z N N ? 6 DA N N ? 6 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 427 F CYS 1036 1_555 F SG CYS 446 F CYS 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? covale ? covale1 F N GLY 83 F GLY 692 1_555 JA O2B ADP . F ADP 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 F OE2 GLU 362 F GLU 971 1_555 KA C9 RY8 . F RY8 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 A SG CYS 427 A CYS 1036 1_555 M ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 446 A CYS 1055 1_555 M ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A SG CYS 454 A CYS 1063 1_555 M ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A SG CYS 457 A CYS 1066 1_555 M ZN ZN . A ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 B SG CYS 427 B CYS 1036 1_555 R ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 B SG CYS 446 B CYS 1055 1_555 R ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 B SG CYS 454 B CYS 1063 1_555 R ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 B SG CYS 457 B CYS 1066 1_555 R ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc9 C SG CYS 427 C CYS 1036 1_555 V ZN ZN . C ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc10 C SG CYS 446 C CYS 1055 1_555 V ZN ZN . C ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 C SG CYS 454 C CYS 1063 1_555 V ZN ZN . C ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc12 C SG CYS 457 C CYS 1066 1_555 V ZN ZN . C ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc13 D SG CYS 427 D CYS 1036 1_555 AA ZN ZN . D ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc14 D SG CYS 446 D CYS 1055 1_555 AA ZN ZN . D ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc15 D SG CYS 454 D CYS 1063 1_555 AA ZN ZN . D ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc16 D SG CYS 457 D CYS 1066 1_555 AA ZN ZN . D ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc17 E SG CYS 427 E CYS 1036 1_555 EA ZN ZN . E ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc18 E SG CYS 446 E CYS 1055 1_555 EA ZN ZN . E ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc19 E SG CYS 454 E CYS 1063 1_555 EA ZN ZN . E ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc20 E SG CYS 457 E CYS 1066 1_555 EA ZN ZN . E ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc21 F SG CYS 427 F CYS 1036 1_555 IA ZN ZN . F ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc22 F SG CYS 446 F CYS 1055 1_555 IA ZN ZN . F ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc23 F SG CYS 454 F CYS 1063 1_555 IA ZN ZN . F ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc24 F SG CYS 457 F CYS 1066 1_555 IA ZN ZN . F ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc25 K OP2 DC 6 Q DC 6 1_555 PA MG MG . Q MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? hydrog 'DG-DC PAIR' hydrog1 G N2 DG 2 M DG 2 1_555 K O2 DC 5 Q DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G N3 DT 3 M DT 3 1_555 K N1 DA 4 Q DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 G O4 DT 3 M DT 3 1_555 K N6 DA 4 Q DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 G N1 DA 4 M DA 4 1_555 K N3 DT 3 Q DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G N6 DA 4 M DA 4 1_555 K O4 DT 3 Q DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G N3 DC 5 M DC 5 1_555 K N1 DG 2 Q DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G N4 DC 5 M DC 5 1_555 K O6 DG 2 Q DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G O2 DC 5 M DC 5 1_555 K N2 DG 2 Q DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 430 n n O1 HO1 PG4 sing 431 n n C1 C2 PG4 sing 432 n n C1 H11 PG4 sing 433 n n C1 H12 PG4 sing 434 n n C2 O2 PG4 sing 435 n n C2 H21 PG4 sing 436 n n C2 H22 PG4 sing 437 n n O2 C3 PG4 sing 438 n n C3 C4 PG4 sing 439 n n C3 H31 PG4 sing 440 n n C3 H32 PG4 sing 441 n n C4 O3 PG4 sing 442 n n C4 H41 PG4 sing 443 n n C4 H42 PG4 sing 444 n n O3 C5 PG4 sing 445 n n C5 C6 PG4 sing 446 n n C5 H51 PG4 sing 447 n n C5 H52 PG4 sing 448 n n C6 O4 PG4 sing 449 n n C6 H61 PG4 sing 450 n n C6 H62 PG4 sing 451 n n O4 C7 PG4 sing 452 n n C7 C8 PG4 sing 453 n n C7 H71 PG4 sing 454 n n C7 H72 PG4 sing 455 n n C8 O5 PG4 sing 456 n n C8 H81 PG4 sing 457 n n C8 H82 PG4 sing 458 n n O5 HO5 PG4 sing 459 n n # _atom_sites.entry_id 7AUD _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] -0.002243 _atom_sites.fract_transf_matrix[1][3] -0.001478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009113 _atom_sites.fract_transf_matrix[2][3] -0.002609 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ZN A 1 1301 1 ZN ZN . N 4 ADP A 1 1302 2 ADP ADP . O 5 RY8 A 1 1303 3 RY8 LIG . P 6 PG4 A 1 1304 4 PG4 PG4 . Q 6 PG4 A 1 1305 5 PG4 PG4 . R 3 ZN B 1 1301 1 ZN ZN . S 4 ADP B 1 1302 2 ADP ADP . T 5 RY8 B 1 1303 3 RY8 LIG . U 6 PG4 B 1 1304 4 PG4 PG4 . V 3 ZN C 1 1301 1 ZN ZN . W 4 ADP C 1 1302 2 ADP ADP . X 5 RY8 C 1 1303 3 RY8 LIG . Y 6 PG4 C 1 1304 4 PG4 PG4 . Z 6 PG4 C 1 1305 5 PG4 PG4 . AA 3 ZN D 1 1301 1 ZN ZN . BA 4 ADP D 1 1302 2 ADP ADP . CA 5 RY8 D 1 1303 3 RY8 LIG . DA 6 PG4 D 1 1304 4 PG4 PG4 . EA 3 ZN E 1 1301 1 ZN ZN . FA 4 ADP E 1 1302 2 ADP ADP . GA 5 RY8 E 1 1303 3 RY8 LIG . HA 6 PG4 E 1 1304 4 PG4 PG4 . IA 3 ZN F 1 1301 1 ZN ZN . JA 4 ADP F 1 1302 2 ADP ADP . KA 5 RY8 F 1 1303 3 RY8 LIG . LA 7 MG F 1 1304 104 MG MG . MA 7 MG M 1 100 100 MG MG . NA 7 MG N 1 101 102 MG MG . OA 7 MG P 1 101 105 MG MG . PA 7 MG Q 1 101 101 MG MG . QA 7 MG Q 1 102 103 MG MG . RA 8 HOH A 1 1401 4 HOH HOH . RA 8 HOH A 2 1402 6 HOH HOH . RA 8 HOH A 3 1403 2 HOH HOH . RA 8 HOH A 4 1404 42 HOH HOH . RA 8 HOH A 5 1405 8 HOH HOH . RA 8 HOH A 6 1406 55 HOH HOH . RA 8 HOH A 7 1407 7 HOH HOH . RA 8 HOH A 8 1408 112 HOH HOH . RA 8 HOH A 9 1409 10 HOH HOH . RA 8 HOH A 10 1410 40 HOH HOH . RA 8 HOH A 11 1411 9 HOH HOH . RA 8 HOH A 12 1412 117 HOH HOH . RA 8 HOH A 13 1413 20 HOH HOH . RA 8 HOH A 14 1414 76 HOH HOH . RA 8 HOH A 15 1415 32 HOH HOH . RA 8 HOH A 16 1416 29 HOH HOH . RA 8 HOH A 17 1417 11 HOH HOH . RA 8 HOH A 18 1418 3 HOH HOH . RA 8 HOH A 19 1419 94 HOH HOH . RA 8 HOH A 20 1420 114 HOH HOH . RA 8 HOH A 21 1421 103 HOH HOH . RA 8 HOH A 22 1422 108 HOH HOH . RA 8 HOH A 23 1423 107 HOH HOH . RA 8 HOH A 24 1424 118 HOH HOH . RA 8 HOH A 25 1425 58 HOH HOH . RA 8 HOH A 26 1426 105 HOH HOH . RA 8 HOH A 27 1427 34 HOH HOH . RA 8 HOH A 28 1428 109 HOH HOH . RA 8 HOH A 29 1429 99 HOH HOH . RA 8 HOH A 30 1430 113 HOH HOH . RA 8 HOH A 31 1431 104 HOH HOH . SA 8 HOH B 1 1401 23 HOH HOH . SA 8 HOH B 2 1402 13 HOH HOH . SA 8 HOH B 3 1403 15 HOH HOH . SA 8 HOH B 4 1404 119 HOH HOH . SA 8 HOH B 5 1405 14 HOH HOH . SA 8 HOH B 6 1406 80 HOH HOH . SA 8 HOH B 7 1407 16 HOH HOH . SA 8 HOH B 8 1408 74 HOH HOH . SA 8 HOH B 9 1409 95 HOH HOH . SA 8 HOH B 10 1410 86 HOH HOH . SA 8 HOH B 11 1411 93 HOH HOH . SA 8 HOH B 12 1412 63 HOH HOH . SA 8 HOH B 13 1413 12 HOH HOH . SA 8 HOH B 14 1414 67 HOH HOH . SA 8 HOH B 15 1415 81 HOH HOH . SA 8 HOH B 16 1416 52 HOH HOH . TA 8 HOH C 1 1401 43 HOH HOH . TA 8 HOH C 2 1402 31 HOH HOH . TA 8 HOH C 3 1403 49 HOH HOH . TA 8 HOH C 4 1404 48 HOH HOH . TA 8 HOH C 5 1405 68 HOH HOH . UA 8 HOH D 1 1401 18 HOH HOH . UA 8 HOH D 2 1402 75 HOH HOH . UA 8 HOH D 3 1403 101 HOH HOH . UA 8 HOH D 4 1404 82 HOH HOH . VA 8 HOH E 1 1401 100 HOH HOH . VA 8 HOH E 2 1402 61 HOH HOH . VA 8 HOH E 3 1403 38 HOH HOH . VA 8 HOH E 4 1404 60 HOH HOH . VA 8 HOH E 5 1405 5 HOH HOH . VA 8 HOH E 6 1406 39 HOH HOH . WA 8 HOH F 1 1401 96 HOH HOH . XA 8 HOH M 1 201 26 HOH HOH . YA 8 HOH Q 1 201 35 HOH HOH . YA 8 HOH Q 2 202 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . HA 6 7.267 39.285 37.633 1 92.28 ? O1 PG4 1304 E 1 HETATM 2 C C1 PG4 . . . HA 6 7.876 39.477 38.9 1 87.98 ? C1 PG4 1304 E 1 HETATM 3 C C2 PG4 . . . HA 6 6.947 40.161 39.856 1 88.51 ? C2 PG4 1304 E 1 HETATM 4 O O2 PG4 . . . HA 6 6.617 41.449 39.355 1 93.72 ? O2 PG4 1304 E 1 HETATM 5 C C3 PG4 . . . HA 6 6.458 42.413 40.385 1 91.27 ? C3 PG4 1304 E 1 HETATM 6 C C4 PG4 . . . HA 6 6.222 43.768 39.804 1 90.13 ? C4 PG4 1304 E 1 HETATM 7 O O3 PG4 . . . HA 6 5.037 43.772 39.021 1 83.12 ? O3 PG4 1304 E 1 HETATM 8 C C5 PG4 . . . HA 6 5.143 44.601 37.872 1 87.75 ? C5 PG4 1304 E 1 HETATM 9 C C6 PG4 . . . HA 6 5.075 43.769 36.635 1 85.4 ? C6 PG4 1304 E 1 HETATM 10 O O4 PG4 . . . HA 6 6.025 42.716 36.707 1 90.53 ? O4 PG4 1304 E 1 HETATM 11 C C7 PG4 . . . HA 6 6.84 42.622 35.549 1 90.79 ? C7 PG4 1304 E 1 HETATM 12 C C8 PG4 . . . HA 6 6.741 41.237 34.987 1 91.54 ? C8 PG4 1304 E 1 HETATM 13 O O5 PG4 . . . HA 6 5.407 40.922 34.625 1 97.84 ? O5 PG4 1304 E 1 # _model_server_stats.io_time_ms 187 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #