data_7AUJ # _model_server_result.job_id EDIAiDpp5ulrTiXVY8pKRw _model_server_result.datetime_utc '2024-11-15 13:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7auj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7AUJ # _exptl.entry_id 7AUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 740.015 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AUJ _cell.length_a 61.893 _cell.length_b 61.893 _cell.length_c 96.513 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 66 A LYS 63 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc2 A OE1 GLU 87 A GLU 84 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc3 B O36 O81 . A O81 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc4 B O47 O81 . A O81 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C6 H19 O27 P7' _chem_comp.formula_weight 740.015 _chem_comp.id O81 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 P5 O81 doub 237 n n O44 P4 O81 doub 238 n n P5 O45 O81 sing 239 n n P5 O25 O81 sing 240 n n P5 O15 O81 sing 241 n n P4 O24 O81 sing 242 n n P4 O34 O81 sing 243 n n P4 O14 O81 sing 244 n n O15 C5 O81 sing 245 n n O14 C4 O81 sing 246 n n O36 P6 O81 doub 247 n n C5 C4 O81 sing 248 n n C5 C6 O81 sing 249 n n C4 C3 O81 sing 250 n n O16 P6 O81 sing 251 n n O16 C6 O81 sing 252 n n O43 P3 O81 doub 253 n n P6 O26 O81 sing 254 n n P6 O46 O81 sing 255 n n C6 C1 O81 sing 256 n n C3 O13 O81 sing 257 n n C3 C2 O81 sing 258 n n O13 P3 O81 sing 259 n n P3 O23 O81 sing 260 n n P3 O33 O81 sing 261 n n C1 C2 O81 sing 262 n n C1 O11 O81 sing 263 n n C2 O12 O81 sing 264 n n O12 P2 O81 sing 265 n n O21 P1 O81 doub 266 n n O11 P1 O81 sing 267 n n O42 P2 O81 doub 268 n n P2 O32 O81 sing 269 n n P2 O22 O81 sing 270 n n P1 O31 O81 sing 271 n n P1 O41 O81 sing 272 n n O47 P7 O81 doub 273 n n O41 P7 O81 sing 274 n n O37 P7 O81 sing 275 n n P7 O27 O81 sing 276 n n O27 H1 O81 sing 277 n n C5 H2 O81 sing 278 n n C6 H3 O81 sing 279 n n C4 H4 O81 sing 280 n n C3 H5 O81 sing 281 n n C2 H6 O81 sing 282 n n C1 H7 O81 sing 283 n n O32 H8 O81 sing 284 n n O22 H9 O81 sing 285 n n O33 H10 O81 sing 286 n n O23 H11 O81 sing 287 n n O34 H12 O81 sing 288 n n O24 H13 O81 sing 289 n n O45 H14 O81 sing 290 n n O25 H15 O81 sing 291 n n O46 H16 O81 sing 292 n n O26 H17 O81 sing 293 n n O31 H18 O81 sing 294 n n O37 H19 O81 sing 295 n n # _atom_sites.entry_id 7AUJ _atom_sites.fract_transf_matrix[1][1] 0.016157 _atom_sites.fract_transf_matrix[1][2] 0.009328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O81 A 1 201 201 O81 O81 . C 3 MG A 1 202 1 MG MG . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 57 HOH HOH . D 4 HOH A 3 303 39 HOH HOH . D 4 HOH A 4 304 38 HOH HOH . D 4 HOH A 5 305 31 HOH HOH . D 4 HOH A 6 306 18 HOH HOH . D 4 HOH A 7 307 16 HOH HOH . D 4 HOH A 8 308 13 HOH HOH . D 4 HOH A 9 309 43 HOH HOH . D 4 HOH A 10 310 42 HOH HOH . D 4 HOH A 11 311 4 HOH HOH . D 4 HOH A 12 312 26 HOH HOH . D 4 HOH A 13 313 12 HOH HOH . D 4 HOH A 14 314 48 HOH HOH . D 4 HOH A 15 315 40 HOH HOH . D 4 HOH A 16 316 11 HOH HOH . D 4 HOH A 17 317 6 HOH HOH . D 4 HOH A 18 318 28 HOH HOH . D 4 HOH A 19 319 27 HOH HOH . D 4 HOH A 20 320 50 HOH HOH . D 4 HOH A 21 321 20 HOH HOH . D 4 HOH A 22 322 44 HOH HOH . D 4 HOH A 23 323 19 HOH HOH . D 4 HOH A 24 324 10 HOH HOH . D 4 HOH A 25 325 55 HOH HOH . D 4 HOH A 26 326 35 HOH HOH . D 4 HOH A 27 327 46 HOH HOH . D 4 HOH A 28 328 41 HOH HOH . D 4 HOH A 29 329 30 HOH HOH . D 4 HOH A 30 330 21 HOH HOH . D 4 HOH A 31 331 8 HOH HOH . D 4 HOH A 32 332 51 HOH HOH . D 4 HOH A 33 333 9 HOH HOH . D 4 HOH A 34 334 53 HOH HOH . D 4 HOH A 35 335 54 HOH HOH . D 4 HOH A 36 336 34 HOH HOH . D 4 HOH A 37 337 7 HOH HOH . D 4 HOH A 38 338 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O27 O81 . . . B 2 10.37 -14.249 -0.994 1 96.09 ? O27 O81 201 A 1 HETATM 2 C C5 O81 . . . B 2 8.266 -17.676 2.818 1 91.56 ? C5 O81 201 A 1 HETATM 3 C C6 O81 . . . B 2 8.428 -16.317 3.455 1 93.01 ? C6 O81 201 A 1 HETATM 4 C C4 O81 . . . B 2 6.785 -17.912 2.642 1 93.79 ? C4 O81 201 A 1 HETATM 5 C C3 O81 . . . B 2 6.257 -16.914 1.63 1 95.88 ? C3 O81 201 A 1 HETATM 6 C C2 O81 . . . B 2 6.405 -15.504 2.176 1 97.04 ? C2 O81 201 A 1 HETATM 7 C C1 O81 . . . B 2 7.852 -15.243 2.55 1 94.94 ? C1 O81 201 A 1 HETATM 8 O O32 O81 . . . B 2 3.247 -15.465 4.136 1 104.38 ? O32 O81 201 A 1 HETATM 9 P P2 O81 . . . B 2 4.417 -14.509 4.023 1 104.88 ? P2 O81 201 A 1 HETATM 10 O O42 O81 . . . B 2 4.164 -13.369 3.059 1 104.71 ? O42 O81 201 A 1 HETATM 11 O O22 O81 . . . B 2 4.934 -14.044 5.369 1 105.75 ? O22 O81 201 A 1 HETATM 12 O O12 O81 . . . B 2 5.588 -15.349 3.355 1 101.18 ? O12 O81 201 A 1 HETATM 13 O O13 O81 . . . B 2 4.868 -17.194 1.361 1 97.72 ? O13 O81 201 A 1 HETATM 14 P P3 O81 . . . B 2 4.146 -17.474 -0.028 1 97.91 ? P3 O81 201 A 1 HETATM 15 O O33 O81 . . . B 2 3.207 -18.642 0.194 1 97.92 ? O33 O81 201 A 1 HETATM 16 O O43 O81 . . . B 2 3.419 -16.189 -0.357 1 98.85 ? O43 O81 201 A 1 HETATM 17 O O23 O81 . . . B 2 5.26 -17.792 -1.005 1 96.88 ? O23 O81 201 A 1 HETATM 18 O O14 O81 . . . B 2 6.562 -19.249 2.161 1 93.68 ? O14 O81 201 A 1 HETATM 19 P P4 O81 . . . B 2 5.498 -20.47 2.28 1 93.82 ? P4 O81 201 A 1 HETATM 20 O O34 O81 . . . B 2 4.9 -20.598 0.894 1 94.68 ? O34 O81 201 A 1 HETATM 21 O O44 O81 . . . B 2 4.502 -20.017 3.326 1 94.15 ? O44 O81 201 A 1 HETATM 22 O O24 O81 . . . B 2 6.28 -21.697 2.7 1 93.93 ? O24 O81 201 A 1 HETATM 23 O O15 O81 . . . B 2 8.821 -18.671 3.701 1 88.03 ? O15 O81 201 A 1 HETATM 24 P P5 O81 . . . B 2 9.58 -20.051 3.506 1 84 ? P5 O81 201 A 1 HETATM 25 O O35 O81 . . . B 2 10.825 -19.995 4.364 1 82.68 ? O35 O81 201 A 1 HETATM 26 O O45 O81 . . . B 2 8.583 -21.084 3.983 1 84.48 ? O45 O81 201 A 1 HETATM 27 O O25 O81 . . . B 2 9.883 -20.147 2.023 1 81.82 ? O25 O81 201 A 1 HETATM 28 O O16 O81 . . . B 2 9.838 -16.104 3.649 1 91.57 ? O16 O81 201 A 1 HETATM 29 P P6 O81 . . . B 2 10.899 -16.271 4.865 1 91.15 ? P6 O81 201 A 1 HETATM 30 O O36 O81 . . . B 2 11.901 -15.158 4.646 1 91.9 ? O36 O81 201 A 1 HETATM 31 O O46 O81 . . . B 2 11.517 -17.651 4.797 1 89.23 ? O46 O81 201 A 1 HETATM 32 O O26 O81 . . . B 2 10.034 -16.058 6.092 1 91.07 ? O26 O81 201 A 1 HETATM 33 O O11 O81 . . . B 2 7.953 -13.961 3.203 1 96.62 ? O11 O81 201 A 1 HETATM 34 P P1 O81 . . . B 2 8.452 -12.712 2.37 1 97.94 ? P1 O81 201 A 1 HETATM 35 O O21 O81 . . . B 2 7.276 -11.86 2.074 1 98.72 ? O21 O81 201 A 1 HETATM 36 O O31 O81 . . . B 2 9.62 -12.115 3.055 1 97.48 ? O31 O81 201 A 1 HETATM 37 O O41 O81 . . . B 2 8.925 -13.389 0.999 1 97.69 ? O41 O81 201 A 1 HETATM 38 P P7 O81 . . . B 2 10.4 -14.383 0.513 1 96.97 ? P7 O81 201 A 1 HETATM 39 O O37 O81 . . . B 2 10.124 -15.803 0.966 1 97.92 ? O37 O81 201 A 1 HETATM 40 O O47 O81 . . . B 2 11.657 -13.808 1.132 1 97.38 ? O47 O81 201 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #