data_7AUK # _model_server_result.job_id M976KJc-9mPuWjVgd52Slg _model_server_result.datetime_utc '2024-11-13 18:11:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7auk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7AUK # _exptl.entry_id 7AUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 740.015 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AUK _cell.length_a 61.526 _cell.length_b 61.526 _cell.length_c 95.108 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H19 O27 P7' _chem_comp.formula_weight 740.015 _chem_comp.id I7P _chem_comp.mon_nstd_flag . _chem_comp.name '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1D-myo-inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 I7P sing 152 n n C2 C1 I7P sing 153 n n C1 C6 I7P sing 154 n n C1 H1 I7P sing 155 n n O12 C2 I7P sing 156 n n C2 C3 I7P sing 157 n n C2 H2 I7P sing 158 n n O13 C3 I7P sing 159 n n C3 C4 I7P sing 160 n n C3 H3 I7P sing 161 n n C4 C5 I7P sing 162 n n C4 O14 I7P sing 163 n n C4 H4 I7P sing 164 n n C6 C5 I7P sing 165 n n C5 O15 I7P sing 166 n n C5 H5 I7P sing 167 n n C6 O16 I7P sing 168 n n C6 H6 I7P sing 169 n n PA1 O11 I7P sing 170 n n PA2 O12 I7P sing 171 n n O13 PA3 I7P sing 172 n n O14 PA4 I7P sing 173 n n O15 PA5 I7P sing 174 n n PA6 O16 I7P sing 175 n n PA1 O21 I7P sing 176 n n O21 HO21 I7P sing 177 n n O22 PA2 I7P sing 178 n n O22 HO22 I7P sing 179 n n PA3 O23 I7P sing 180 n n O23 HO23 I7P sing 181 n n O24 PA4 I7P sing 182 n n O24 HO24 I7P sing 183 n n PA5 O25 I7P doub 184 n n PA6 O26 I7P sing 185 n n O26 HO26 I7P sing 186 n n O31 PA1 I7P sing 187 n n O31 HO31 I7P sing 188 n n O32 PA2 I7P doub 189 n n O33 PA3 I7P doub 190 n n O34 PA4 I7P doub 191 n n PA5 O35 I7P sing 192 n n O35 HO35 I7P sing 193 n n PA6 O36 I7P sing 194 n n O36 HO36 I7P sing 195 n n O41 PA1 I7P doub 196 n n O42 PA2 I7P sing 197 n n O42 HO42 I7P sing 198 n n O43 PA3 I7P sing 199 n n O43 HO43 I7P sing 200 n n PA4 O44 I7P sing 201 n n O44 HO44 I7P sing 202 n n O45 PA5 I7P sing 203 n n O45 PB5 I7P sing 204 n n O46 PA6 I7P doub 205 n n PB5 O55 I7P sing 206 n n O55 HO55 I7P sing 207 n n O65 PB5 I7P sing 208 n n O65 HO65 I7P sing 209 n n O75 PB5 I7P doub 210 n n # _atom_sites.entry_id 7AUK _atom_sites.fract_transf_matrix[1][1] 0.016253 _atom_sites.fract_transf_matrix[1][2] 0.009384 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I7P A 1 201 201 I7P I7P . C 3 HOH A 1 301 61 HOH HOH . C 3 HOH A 2 302 54 HOH HOH . C 3 HOH A 3 303 57 HOH HOH . C 3 HOH A 4 304 41 HOH HOH . C 3 HOH A 5 305 9 HOH HOH . C 3 HOH A 6 306 48 HOH HOH . C 3 HOH A 7 307 59 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 55 HOH HOH . C 3 HOH A 10 310 32 HOH HOH . C 3 HOH A 11 311 34 HOH HOH . C 3 HOH A 12 312 26 HOH HOH . C 3 HOH A 13 313 45 HOH HOH . C 3 HOH A 14 314 51 HOH HOH . C 3 HOH A 15 315 4 HOH HOH . C 3 HOH A 16 316 25 HOH HOH . C 3 HOH A 17 317 31 HOH HOH . C 3 HOH A 18 318 1 HOH HOH . C 3 HOH A 19 319 47 HOH HOH . C 3 HOH A 20 320 53 HOH HOH . C 3 HOH A 21 321 12 HOH HOH . C 3 HOH A 22 322 39 HOH HOH . C 3 HOH A 23 323 11 HOH HOH . C 3 HOH A 24 324 30 HOH HOH . C 3 HOH A 25 325 23 HOH HOH . C 3 HOH A 26 326 14 HOH HOH . C 3 HOH A 27 327 7 HOH HOH . C 3 HOH A 28 328 58 HOH HOH . C 3 HOH A 29 329 3 HOH HOH . C 3 HOH A 30 330 29 HOH HOH . C 3 HOH A 31 331 21 HOH HOH . C 3 HOH A 32 332 37 HOH HOH . C 3 HOH A 33 333 43 HOH HOH . C 3 HOH A 34 334 20 HOH HOH . C 3 HOH A 35 335 49 HOH HOH . C 3 HOH A 36 336 16 HOH HOH . C 3 HOH A 37 337 22 HOH HOH . C 3 HOH A 38 338 28 HOH HOH . C 3 HOH A 39 339 5 HOH HOH . C 3 HOH A 40 340 19 HOH HOH . C 3 HOH A 41 341 27 HOH HOH . C 3 HOH A 42 342 18 HOH HOH . C 3 HOH A 43 343 40 HOH HOH . C 3 HOH A 44 344 24 HOH HOH . C 3 HOH A 45 345 35 HOH HOH . C 3 HOH A 46 346 56 HOH HOH . C 3 HOH A 47 347 15 HOH HOH . C 3 HOH A 48 348 10 HOH HOH . C 3 HOH A 49 349 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I7P . . . B 2 7.101 -15.845 2.662 1 91.97 ? C1 I7P 201 A 1 HETATM 2 C C2 I7P . . . B 2 8.584 -15.996 2.97 1 89.97 ? C2 I7P 201 A 1 HETATM 3 C C3 I7P . . . B 2 8.85 -17.227 3.823 1 90.12 ? C3 I7P 201 A 1 HETATM 4 C C4 I7P . . . B 2 8.236 -18.467 3.196 1 89.05 ? C4 I7P 201 A 1 HETATM 5 C C5 I7P . . . B 2 6.743 -18.26 3.02 1 91.68 ? C5 I7P 201 A 1 HETATM 6 C C6 I7P . . . B 2 6.542 -17.116 2.046 1 91.19 ? C6 I7P 201 A 1 HETATM 7 O O11 I7P . . . B 2 6.923 -14.743 1.715 1 93.5 ? O11 I7P 201 A 1 HETATM 8 O O12 I7P . . . B 2 9.312 -16.156 1.706 1 86.72 ? O12 I7P 201 A 1 HETATM 9 O O13 I7P . . . B 2 10.299 -17.409 3.902 1 90.07 ? O13 I7P 201 A 1 HETATM 10 O O14 I7P . . . B 2 8.489 -19.62 4.063 1 86.72 ? O14 I7P 201 A 1 HETATM 11 O O15 I7P . . . B 2 6.128 -19.479 2.487 1 94.16 ? O15 I7P 201 A 1 HETATM 12 O O16 I7P . . . B 2 5.111 -16.951 1.772 1 92.78 ? O16 I7P 201 A 1 HETATM 13 O O21 I7P . . . B 2 5.778 -13.483 3.583 1 98.59 -1 O21 I7P 201 A 1 HETATM 14 O O22 I7P . . . B 2 9.395 -13.79 0.766 1 84.8 -1 O22 I7P 201 A 1 HETATM 15 O O23 I7P . . . B 2 11.851 -17.765 5.807 1 91.13 -1 O23 I7P 201 A 1 HETATM 16 O O24 I7P . . . B 2 10.303 -20.347 2.49 1 81.84 -1 O24 I7P 201 A 1 HETATM 17 O O25 I7P . . . B 2 4.9 -19.828 4.692 1 100.36 -1 O25 I7P 201 A 1 HETATM 18 O O26 I7P . . . B 2 4.624 -18.912 0.227 1 91.33 -1 O26 I7P 201 A 1 HETATM 19 O O31 I7P . . . B 2 5.035 -13.223 1.186 1 96.36 -1 O31 I7P 201 A 1 HETATM 20 O O32 I7P . . . B 2 10.669 -15.662 -0.311 1 80.97 -1 O32 I7P 201 A 1 HETATM 21 O O33 I7P . . . B 2 10.299 -15.778 5.829 1 92.11 -1 O33 I7P 201 A 1 HETATM 22 O O34 I7P . . . B 2 10.86 -19.79 4.883 1 84.76 -1 O34 I7P 201 A 1 HETATM 23 O O35 I7P . . . B 2 3.669 -20.085 2.488 1 99.97 ? O35 I7P 201 A 1 HETATM 24 O O36 I7P . . . B 2 5.172 -16.648 -0.721 1 91.02 -1 O36 I7P 201 A 1 HETATM 25 O O41 I7P . . . B 2 7.234 -12.244 1.945 1 96.12 ? O41 I7P 201 A 1 HETATM 26 O O42 I7P . . . B 2 11.416 -14.758 1.91 1 83.2 ? O42 I7P 201 A 1 HETATM 27 O O43 I7P . . . B 2 12.246 -15.85 4.24 1 90.05 ? O43 I7P 201 A 1 HETATM 28 O O44 I7P . . . B 2 9.603 -21.889 4.35 1 84.34 ? O44 I7P 201 A 1 HETATM 29 O O45 I7P . . . B 2 5.441 -21.758 3.152 1 99.38 ? O45 I7P 201 A 1 HETATM 30 O O46 I7P . . . B 2 2.975 -17.026 0.442 1 93.35 ? O46 I7P 201 A 1 HETATM 31 O O55 I7P . . . B 2 5.581 -23.818 4.54 1 103.53 -1 O55 I7P 201 A 1 HETATM 32 O O65 I7P . . . B 2 6.932 -21.793 5.174 1 104.43 -1 O65 I7P 201 A 1 HETATM 33 O O75 I7P . . . B 2 7.523 -23.113 3.109 1 98.5 ? O75 I7P 201 A 1 HETATM 34 P PA1 I7P . . . B 2 6.216 -13.354 2.133 1 97.29 ? PA1 I7P 201 A 1 HETATM 35 P PA2 I7P . . . B 2 10.237 -15.03 0.996 1 83.99 ? PA2 I7P 201 A 1 HETATM 36 P PA3 I7P . . . B 2 11.212 -16.659 4.995 1 90.46 ? PA3 I7P 201 A 1 HETATM 37 P PA4 I7P . . . B 2 9.872 -20.453 3.945 1 84.23 ? PA4 I7P 201 A 1 HETATM 38 P PA5 I7P . . . B 2 4.94 -20.238 3.257 1 97.59 ? PA5 I7P 201 A 1 HETATM 39 P PA6 I7P . . . B 2 4.44 -17.41 0.367 1 92.1 ? PA6 I7P 201 A 1 HETATM 40 P PB5 I7P . . . B 2 6.429 -22.667 4.047 1 101.01 ? PB5 I7P 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #