data_7AUM # _model_server_result.job_id '_YtoMJ4KyowoSOT5SpXgfw' _model_server_result.datetime_utc '2024-11-15 14:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7AUM # _exptl.entry_id 7AUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 737.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AUM _cell.length_a 61.809 _cell.length_b 61.809 _cell.length_c 95.474 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H19 F2 N O24 P6' _chem_comp.formula_weight 737.068 _chem_comp.id KDJ _chem_comp.mon_nstd_flag . _chem_comp.name '(1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 PA2 KDJ doub 173 n n O42 PA2 KDJ sing 174 n n O41 PA1 KDJ doub 175 n n O31 PA1 KDJ sing 176 n n PA2 O22 KDJ sing 177 n n PA2 O12 KDJ sing 178 n n PA1 O11 KDJ sing 179 n n PA1 O21 KDJ sing 180 n n O11 C1 KDJ sing 181 n n O12 C2 KDJ sing 182 n n O46 PA6 KDJ doub 183 n n C2 C1 KDJ sing 184 n n C2 C3 KDJ sing 185 n n C1 C6 KDJ sing 186 n n O33 PA3 KDJ doub 187 n n O43 PA3 KDJ sing 188 n n O13 PA3 KDJ sing 189 n n O13 C3 KDJ sing 190 n n C6 O16 KDJ sing 191 n n C6 C5 KDJ sing 192 n n PA6 O36 KDJ sing 193 n n PA6 O16 KDJ sing 194 n n PA6 O26 KDJ sing 195 n n PA3 O23 KDJ sing 196 n n C3 C4 KDJ sing 197 n n C4 C5 KDJ sing 198 n n C4 O14 KDJ sing 199 n n O24 PA4 KDJ doub 200 n n C5 N15 KDJ sing 201 n n N15 C25 KDJ sing 202 n n O14 PA4 KDJ sing 203 n n PA4 O34 KDJ sing 204 n n PA4 O44 KDJ sing 205 n n O85 PB5 KDJ doub 206 n n C25 O35 KDJ doub 207 n n C25 C45 KDJ sing 208 n n F55 C45 KDJ sing 209 n n C45 PB5 KDJ sing 210 n n C45 F65 KDJ sing 211 n n PB5 O95 KDJ sing 212 n n PB5 O75 KDJ sing 213 n n N15 H1 KDJ sing 214 n n C3 H2 KDJ sing 215 n n C4 H3 KDJ sing 216 n n C5 H4 KDJ sing 217 n n C6 H5 KDJ sing 218 n n C1 H6 KDJ sing 219 n n C2 H7 KDJ sing 220 n n O75 H8 KDJ sing 221 n n O95 H9 KDJ sing 222 n n O34 H10 KDJ sing 223 n n O44 H11 KDJ sing 224 n n O43 H12 KDJ sing 225 n n O23 H13 KDJ sing 226 n n O42 H14 KDJ sing 227 n n O22 H15 KDJ sing 228 n n O31 H16 KDJ sing 229 n n O21 H17 KDJ sing 230 n n O36 H18 KDJ sing 231 n n O26 H19 KDJ sing 232 n n # _atom_sites.entry_id 7AUM _atom_sites.fract_transf_matrix[1][1] 0.016179 _atom_sites.fract_transf_matrix[1][2] 0.009341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KDJ A 1 201 201 KDJ KDJ . C 3 HOH A 1 301 37 HOH HOH . C 3 HOH A 2 302 10 HOH HOH . C 3 HOH A 3 303 4 HOH HOH . C 3 HOH A 4 304 14 HOH HOH . C 3 HOH A 5 305 25 HOH HOH . C 3 HOH A 6 306 50 HOH HOH . C 3 HOH A 7 307 54 HOH HOH . C 3 HOH A 8 308 15 HOH HOH . C 3 HOH A 9 309 51 HOH HOH . C 3 HOH A 10 310 1 HOH HOH . C 3 HOH A 11 311 52 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 48 HOH HOH . C 3 HOH A 14 314 6 HOH HOH . C 3 HOH A 15 315 23 HOH HOH . C 3 HOH A 16 316 53 HOH HOH . C 3 HOH A 17 317 21 HOH HOH . C 3 HOH A 18 318 16 HOH HOH . C 3 HOH A 19 319 26 HOH HOH . C 3 HOH A 20 320 31 HOH HOH . C 3 HOH A 21 321 32 HOH HOH . C 3 HOH A 22 322 28 HOH HOH . C 3 HOH A 23 323 40 HOH HOH . C 3 HOH A 24 324 49 HOH HOH . C 3 HOH A 25 325 17 HOH HOH . C 3 HOH A 26 326 8 HOH HOH . C 3 HOH A 27 327 41 HOH HOH . C 3 HOH A 28 328 11 HOH HOH . C 3 HOH A 29 329 27 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 55 HOH HOH . C 3 HOH A 32 332 13 HOH HOH . C 3 HOH A 33 333 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N15 KDJ . . . B 2 5.905 -17.96 2.271 1 140.65 ? N15 KDJ 201 A 1 HETATM 2 C C3 KDJ . . . B 2 9.205 -16.742 3.563 1 119.25 ? C3 KDJ 201 A 1 HETATM 3 C C4 KDJ . . . B 2 8.194 -17.699 2.973 1 118.76 ? C4 KDJ 201 A 1 HETATM 4 C C5 KDJ . . . B 2 6.818 -17.057 2.952 1 129.92 ? C5 KDJ 201 A 1 HETATM 5 C C6 KDJ . . . B 2 6.811 -15.703 2.252 1 131.03 ? C6 KDJ 201 A 1 HETATM 6 C C1 KDJ . . . B 2 7.895 -14.798 2.823 1 129.64 ? C1 KDJ 201 A 1 HETATM 7 C C2 KDJ . . . B 2 9.234 -15.493 2.716 1 124.01 ? C2 KDJ 201 A 1 HETATM 8 O O75 KDJ . . . B 2 5.052 -20.966 3.541 1 175.52 ? O75 KDJ 201 A 1 HETATM 9 P PB5 KDJ . . . B 2 3.667 -20.557 3.066 1 176.4 ? PB5 KDJ 201 A 1 HETATM 10 O O85 KDJ . . . B 2 3.029 -21.623 2.197 1 179.36 ? O85 KDJ 201 A 1 HETATM 11 O O95 KDJ . . . B 2 2.766 -20.159 4.223 1 177.54 ? O95 KDJ 201 A 1 HETATM 12 C C45 KDJ . . . B 2 3.816 -19.333 2.162 1 168.24 ? C45 KDJ 201 A 1 HETATM 13 F F55 KDJ . . . B 2 2.654 -18.675 1.954 1 171.5 ? F55 KDJ 201 A 1 HETATM 14 F F65 KDJ . . . B 2 4.333 -19.584 0.934 1 165.63 ? F65 KDJ 201 A 1 HETATM 15 C C25 KDJ . . . B 2 4.789 -18.368 2.885 1 158.4 ? C25 KDJ 201 A 1 HETATM 16 O O35 KDJ . . . B 2 4.532 -17.978 4.016 1 164.42 ? O35 KDJ 201 A 1 HETATM 17 O O14 KDJ . . . B 2 8.168 -18.892 3.817 1 109.16 ? O14 KDJ 201 A 1 HETATM 18 P PA4 KDJ . . . B 2 9.124 -20.073 3.345 1 99.9 ? PA4 KDJ 201 A 1 HETATM 19 O O34 KDJ . . . B 2 8.239 -21.304 3.429 1 107.22 ? O34 KDJ 201 A 1 HETATM 20 O O44 KDJ . . . B 2 10.283 -20.169 4.31 1 98.16 ? O44 KDJ 201 A 1 HETATM 21 O O24 KDJ . . . B 2 9.581 -19.804 1.925 1 95.97 ? O24 KDJ 201 A 1 HETATM 22 O O13 KDJ . . . B 2 10.521 -17.374 3.565 1 115.42 ? O13 KDJ 201 A 1 HETATM 23 P PA3 KDJ . . . B 2 11.287 -17.205 4.947 1 112.7 ? PA3 KDJ 201 A 1 HETATM 24 O O33 KDJ . . . B 2 12.71 -16.902 4.523 1 109.99 ? O33 KDJ 201 A 1 HETATM 25 O O43 KDJ . . . B 2 11.188 -18.517 5.703 1 110.68 ? O43 KDJ 201 A 1 HETATM 26 O O23 KDJ . . . B 2 10.658 -16.051 5.712 1 111.88 ? O23 KDJ 201 A 1 HETATM 27 O O12 KDJ . . . B 2 9.398 -15.935 1.329 1 122.31 ? O12 KDJ 201 A 1 HETATM 28 P PA2 KDJ . . . B 2 10.608 -15.374 0.469 1 118.16 ? PA2 KDJ 201 A 1 HETATM 29 O O32 KDJ . . . B 2 10.053 -14.148 -0.224 1 118.83 ? O32 KDJ 201 A 1 HETATM 30 O O42 KDJ . . . B 2 10.89 -16.504 -0.506 1 114.9 ? O42 KDJ 201 A 1 HETATM 31 O O22 KDJ . . . B 2 11.797 -15.061 1.371 1 114.46 ? O22 KDJ 201 A 1 HETATM 32 O O11 KDJ . . . B 2 7.963 -13.529 2.087 1 133.6 ? O11 KDJ 201 A 1 HETATM 33 P PA1 KDJ . . . B 2 8.123 -12.209 2.967 1 140.3 ? PA1 KDJ 201 A 1 HETATM 34 O O31 KDJ . . . B 2 9.609 -11.962 3.172 1 137.25 ? O31 KDJ 201 A 1 HETATM 35 O O41 KDJ . . . B 2 7.482 -11.11 2.14 1 138.13 ? O41 KDJ 201 A 1 HETATM 36 O O21 KDJ . . . B 2 7.395 -12.419 4.289 1 140.98 ? O21 KDJ 201 A 1 HETATM 37 O O16 KDJ . . . B 2 5.5 -15.092 2.486 1 139.03 ? O16 KDJ 201 A 1 HETATM 38 P PA6 KDJ . . . B 2 5.068 -13.86 1.575 1 142.62 ? PA6 KDJ 201 A 1 HETATM 39 O O36 KDJ . . . B 2 6.18 -13.503 0.621 1 142.24 ? O36 KDJ 201 A 1 HETATM 40 O O46 KDJ . . . B 2 4.768 -12.725 2.543 1 144.48 ? O46 KDJ 201 A 1 HETATM 41 O O26 KDJ . . . B 2 3.831 -14.332 0.836 1 142.63 ? O26 KDJ 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #