data_7AUQ # _model_server_result.job_id upARgKhneHhd04DM9plHgA _model_server_result.datetime_utc '2024-10-26 06:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7auq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7AUQ # _exptl.entry_id 7AUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PENTAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AUQ _cell.length_a 61.999 _cell.length_b 61.999 _cell.length_c 95.405 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 66 A LYS 63 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc2 A OE1 GLU 87 A GLU 84 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 B O3G 5FA . A 5FA 201 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc4 B O1D 5FA . A 5FA 201 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc5 B O2E 5FA . A 5FA 201 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 D CA CA . A CA 203 1_555 E O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? # _chem_comp.formula 'C10 H18 N5 O19 P5' _chem_comp.formula_weight 667.141 _chem_comp.id 5FA _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-PENTAPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 5FA sing 1 n y N9 C4 5FA sing 2 n y N9 C1' 5FA sing 3 n n C8 N7 5FA doub 4 n y C8 H8 5FA sing 5 n n N7 C5 5FA sing 6 n y C5 C6 5FA sing 7 n y C5 C4 5FA doub 8 n y C6 N6 5FA sing 9 n n C6 N1 5FA doub 10 n y N6 H61 5FA sing 11 n n N6 H62 5FA sing 12 n n N1 C2 5FA sing 13 n y C2 N3 5FA doub 14 n y C2 H2 5FA sing 15 n n N3 C4 5FA sing 16 n y O5' C5' 5FA sing 17 n n O5' PA 5FA sing 18 n n C5' C4' 5FA sing 19 n n C5' "H5'1" 5FA sing 20 n n C5' "H5'2" 5FA sing 21 n n C4' O4' 5FA sing 22 n n C4' C3' 5FA sing 23 n n C4' H4' 5FA sing 24 n n O4' C1' 5FA sing 25 n n C3' O3' 5FA sing 26 n n C3' C2' 5FA sing 27 n n C3' H3' 5FA sing 28 n n O3' H3T 5FA sing 29 n n C2' O2' 5FA sing 30 n n C2' C1' 5FA sing 31 n n C2' H2' 5FA sing 32 n n O2' "HO'2" 5FA sing 33 n n C1' H1' 5FA sing 34 n n PA O1A 5FA doub 35 n n PA O2A 5FA sing 36 n n PA O3A 5FA sing 37 n n O2A H2A 5FA sing 38 n n O3A PB 5FA sing 39 n n PB O1B 5FA doub 40 n n PB O2B 5FA sing 41 n n PB O3B 5FA sing 42 n n O2B H2B 5FA sing 43 n n O3B PG 5FA sing 44 n n PG O2G 5FA doub 45 n n PG O1G 5FA sing 46 n n PG O3G 5FA sing 47 n n O1G H1G 5FA sing 48 n n O3G PD 5FA sing 49 n n PD O1D 5FA doub 50 n n PD O2D 5FA sing 51 n n PD O3D 5FA sing 52 n n O2D H2D 5FA sing 53 n n O3D PE 5FA sing 54 n n PE O1E 5FA doub 55 n n PE O2E 5FA sing 56 n n PE O3E 5FA sing 57 n n O2E H2E 5FA sing 58 n n O3E H3E 5FA sing 59 n n # _atom_sites.entry_id 7AUQ _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0.009312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5FA A 1 201 201 5FA 5FA . C 3 ADE A 1 202 301 ADE ADE . D 4 CA A 1 203 1 CA CA . E 5 HOH A 1 301 50 HOH HOH . E 5 HOH A 2 302 34 HOH HOH . E 5 HOH A 3 303 54 HOH HOH . E 5 HOH A 4 304 49 HOH HOH . E 5 HOH A 5 305 55 HOH HOH . E 5 HOH A 6 306 48 HOH HOH . E 5 HOH A 7 307 13 HOH HOH . E 5 HOH A 8 308 4 HOH HOH . E 5 HOH A 9 309 6 HOH HOH . E 5 HOH A 10 310 52 HOH HOH . E 5 HOH A 11 311 20 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 14 HOH HOH . E 5 HOH A 14 314 43 HOH HOH . E 5 HOH A 15 315 35 HOH HOH . E 5 HOH A 16 316 2 HOH HOH . E 5 HOH A 17 317 26 HOH HOH . E 5 HOH A 18 318 19 HOH HOH . E 5 HOH A 19 319 41 HOH HOH . E 5 HOH A 20 320 44 HOH HOH . E 5 HOH A 21 321 27 HOH HOH . E 5 HOH A 22 322 21 HOH HOH . E 5 HOH A 23 323 37 HOH HOH . E 5 HOH A 24 324 7 HOH HOH . E 5 HOH A 25 325 9 HOH HOH . E 5 HOH A 26 326 45 HOH HOH . E 5 HOH A 27 327 31 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 51 HOH HOH . E 5 HOH A 30 330 29 HOH HOH . E 5 HOH A 31 331 33 HOH HOH . E 5 HOH A 32 332 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 5FA . . . B 2 5.731 -20.88 1.52 1 128.79 ? N9 5FA 201 A 1 HETATM 2 C C8 5FA . . . B 2 5.698 -22.003 2.267 1 125.22 ? C8 5FA 201 A 1 HETATM 3 N N7 5FA . . . B 2 5.844 -23.079 1.461 1 123.4 ? N7 5FA 201 A 1 HETATM 4 C C5 5FA . . . B 2 5.961 -22.619 0.197 1 127.92 ? C5 5FA 201 A 1 HETATM 5 C C6 5FA . . . B 2 6.145 -23.286 -1.125 1 124.88 ? C6 5FA 201 A 1 HETATM 6 N N6 5FA . . . B 2 6.233 -24.637 -1.252 1 117.45 ? N6 5FA 201 A 1 HETATM 7 N N1 5FA . . . B 2 6.224 -22.488 -2.212 1 127.97 ? N1 5FA 201 A 1 HETATM 8 C C2 5FA . . . B 2 6.132 -21.159 -2.055 1 122.46 ? C2 5FA 201 A 1 HETATM 9 N N3 5FA . . . B 2 5.972 -20.479 -0.917 1 125.28 ? N3 5FA 201 A 1 HETATM 10 C C4 5FA . . . B 2 5.883 -21.216 0.234 1 133.47 ? C4 5FA 201 A 1 HETATM 11 O O5' 5FA . . . B 2 8.287 -19.154 3.543 1 65.04 ? O5' 5FA 201 A 1 HETATM 12 C C5' 5FA . . . B 2 8.285 -17.891 2.92 1 82.58 ? C5' 5FA 201 A 1 HETATM 13 C C4' 5FA . . . B 2 6.866 -17.666 2.528 1 95.47 ? C4' 5FA 201 A 1 HETATM 14 O O4' 5FA . . . B 2 6.625 -18.65 1.532 1 104.94 ? O4' 5FA 201 A 1 HETATM 15 C C3' 5FA . . . B 2 5.913 -17.88 3.683 1 104.86 ? C3' 5FA 201 A 1 HETATM 16 O O3' 5FA . . . B 2 4.807 -16.975 3.582 1 103.4 ? O3' 5FA 201 A 1 HETATM 17 C C2' 5FA . . . B 2 5.542 -19.342 3.493 1 112.46 ? C2' 5FA 201 A 1 HETATM 18 O O2' 5FA . . . B 2 4.261 -19.677 4.023 1 109.73 ? O2' 5FA 201 A 1 HETATM 19 C C1' 5FA . . . B 2 5.576 -19.479 1.98 1 117.36 ? C1' 5FA 201 A 1 HETATM 20 P PA 5FA . . . B 2 9.711 -19.791 3.714 1 68.02 ? PA 5FA 201 A 1 HETATM 21 O O1A 5FA . . . B 2 10.023 -20.335 2.358 1 68.52 ? O1A 5FA 201 A 1 HETATM 22 O O2A 5FA . . . B 2 9.86 -20.666 4.935 1 71.66 ? O2A 5FA 201 A 1 HETATM 23 O O3A 5FA . . . B 2 10.734 -18.583 3.923 1 76.18 ? O3A 5FA 201 A 1 HETATM 24 P PB 5FA . . . B 2 11.156 -17.769 5.225 1 70.24 ? PB 5FA 201 A 1 HETATM 25 O O1B 5FA . . . B 2 9.987 -17.738 6.178 1 74.3 ? O1B 5FA 201 A 1 HETATM 26 O O2B 5FA . . . B 2 12.475 -18.235 5.758 1 66.01 ? O2B 5FA 201 A 1 HETATM 27 O O3B 5FA . . . B 2 11.424 -16.318 4.667 1 85.5 ? O3B 5FA 201 A 1 HETATM 28 P PG 5FA . . . B 2 10.466 -15.054 4.805 1 100.84 ? PG 5FA 201 A 1 HETATM 29 O O2G 5FA . . . B 2 11.174 -14.079 5.738 1 108.98 ? O2G 5FA 201 A 1 HETATM 30 O O1G 5FA . . . B 2 9.08 -15.524 5.194 1 101.63 ? O1G 5FA 201 A 1 HETATM 31 O O3G 5FA . . . B 2 10.395 -14.502 3.273 1 105.41 ? O3G 5FA 201 A 1 HETATM 32 P PD 5FA . . . B 2 9.778 -14.979 1.832 1 118.79 ? PD 5FA 201 A 1 HETATM 33 O O1D 5FA . . . B 2 10.611 -16.139 1.341 1 102.15 ? O1D 5FA 201 A 1 HETATM 34 O O2D 5FA . . . B 2 8.263 -15.041 1.915 1 108.79 ? O2D 5FA 201 A 1 HETATM 35 O O3D 5FA . . . B 2 10.107 -13.733 0.86 1 107.6 ? O3D 5FA 201 A 1 HETATM 36 P PE 5FA . . . B 2 10.781 -12.291 1.193 1 112.72 ? PE 5FA 201 A 1 HETATM 37 O O1E 5FA . . . B 2 9.895 -11.657 2.3 1 91.54 ? O1E 5FA 201 A 1 HETATM 38 O O2E 5FA . . . B 2 12.229 -12.647 1.596 1 81.41 ? O2E 5FA 201 A 1 HETATM 39 O O3E 5FA . . . B 2 10.906 -11.505 -0.104 1 81.78 ? O3E 5FA 201 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #