data_7AVN # _model_server_result.job_id Iu4NFfJCIic3f3eqsNVS-w _model_server_result.datetime_utc '2024-11-23 00:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7avn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":316}' # _entry.id 7AVN # _exptl.entry_id 7AVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 63.66 _cell.angle_beta 78.98 _cell.angle_gamma 80.33 _cell.entry_id 7AVN _cell.length_a 40.686 _cell.length_b 56.628 _cell.length_c 57.386 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,IA 1 1 B,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 GA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 199 A ASN 199 1_555 A N LYR 200 A LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 A C LYR 200 A LYR 200 1_555 A N VAL 201 A VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 B C ASN 199 B ASN 199 1_555 B N LYR 200 B LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 B C LYR 200 B LYR 200 1_555 B N VAL 201 B VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 434 n n C10 C9 OLC doub 435 n n C10 C11 OLC sing 436 n n C9 C8 OLC sing 437 n n C17 C16 OLC sing 438 z n C11 C12 OLC sing 439 n n C8 C7 OLC sing 440 n n C24 C22 OLC sing 441 n n C24 O25 OLC sing 442 n n C16 C15 OLC sing 443 n n C12 C13 OLC sing 444 n n C7 C6 OLC sing 445 n n C15 C14 OLC sing 446 n n C13 C14 OLC sing 447 n n C6 C5 OLC sing 448 n n C5 C4 OLC sing 449 n n C4 C3 OLC sing 450 n n C3 C2 OLC sing 451 n n C2 C1 OLC sing 452 n n C21 C22 OLC sing 453 n n C21 O20 OLC sing 454 n n C1 O19 OLC doub 455 n n C1 O20 OLC sing 456 n n C22 O23 OLC sing 457 n n C18 H18 OLC sing 458 n n C18 H18A OLC sing 459 n n C18 H18B OLC sing 460 n n C10 H10 OLC sing 461 n n C9 H9 OLC sing 462 n n C17 H17 OLC sing 463 n n C17 H17A OLC sing 464 n n C11 H11 OLC sing 465 n n C11 H11A OLC sing 466 n n C8 H8 OLC sing 467 n n C8 H8A OLC sing 468 n n C24 H24 OLC sing 469 n n C24 H24A OLC sing 470 n n C16 H16 OLC sing 471 n n C16 H16A OLC sing 472 n n C12 H12 OLC sing 473 n n C12 H12A OLC sing 474 n n C7 H7 OLC sing 475 n n C7 H7A OLC sing 476 n n C15 H15 OLC sing 477 n n C15 H15A OLC sing 478 n n C13 H13 OLC sing 479 n n C13 H13A OLC sing 480 n n C6 H6 OLC sing 481 n n C6 H6A OLC sing 482 n n C14 H14 OLC sing 483 n n C14 H14A OLC sing 484 n n C5 H5 OLC sing 485 n n C5 H5A OLC sing 486 n n C4 H4 OLC sing 487 n n C4 H4A OLC sing 488 n n C3 H3 OLC sing 489 n n C3 H3A OLC sing 490 n n C2 H2 OLC sing 491 n n C2 H2A OLC sing 492 n n C21 H21 OLC sing 493 n n C21 H21A OLC sing 494 n n C22 H22 OLC sing 495 n n O25 HO25 OLC sing 496 n n O23 HO23 OLC sing 497 n n # _atom_sites.entry_id 7AVN _atom_sites.fract_transf_matrix[1][1] 0.024578 _atom_sites.fract_transf_matrix[1][2] -0.004186 _atom_sites.fract_transf_matrix[1][3] -0.003321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017913 _atom_sites.fract_transf_matrix[2][3] -0.008419 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 301 10 LFA LFA . D 2 LFA A 1 302 11 LFA LFA . E 2 LFA A 1 303 12 LFA LFA . F 2 LFA A 1 304 16 LFA LFA . G 2 LFA A 1 305 19 LFA LFA . H 2 LFA A 1 306 21 LFA LFA . I 2 LFA A 1 307 22 LFA LFA . J 2 LFA A 1 308 23 LFA LFA . K 2 LFA A 1 309 29 LFA LFA . L 2 LFA A 1 310 30 LFA LFA . M 2 LFA A 1 311 31 LFA LFA . N 2 LFA A 1 312 33 LFA LFA . O 2 LFA A 1 313 34 LFA LFA . P 3 OLB A 1 314 2 OLB OLB . Q 4 OLC A 1 315 3 OLC OLC . R 4 OLC A 1 316 4 OLC OLC . S 2 LFA B 1 301 4 LFA LFA . T 2 LFA B 1 302 13 LFA LFA . U 2 LFA B 1 303 14 LFA LFA . V 2 LFA B 1 304 15 LFA LFA . W 2 LFA B 1 305 17 LFA LFA . X 2 LFA B 1 306 18 LFA LFA . Y 2 LFA B 1 307 20 LFA LFA . Z 2 LFA B 1 308 24 LFA LFA . AA 2 LFA B 1 309 25 LFA LFA . BA 2 LFA B 1 310 26 LFA LFA . CA 2 LFA B 1 311 27 LFA LFA . DA 2 LFA B 1 312 28 LFA LFA . EA 2 LFA B 1 313 32 LFA LFA . FA 3 OLB B 1 314 1 OLB OLB . GA 4 OLC B 1 315 1 OLC OLC . HA 4 OLC B 1 316 2 OLC OLC . IA 5 HOH A 1 401 105 HOH HOH . IA 5 HOH A 2 402 77 HOH HOH . IA 5 HOH A 3 403 142 HOH HOH . IA 5 HOH A 4 404 116 HOH HOH . IA 5 HOH A 5 405 146 HOH HOH . IA 5 HOH A 6 406 14 HOH HOH . IA 5 HOH A 7 407 135 HOH HOH . IA 5 HOH A 8 408 41 HOH HOH . IA 5 HOH A 9 409 8 HOH HOH . IA 5 HOH A 10 410 16 HOH HOH . IA 5 HOH A 11 411 63 HOH HOH . IA 5 HOH A 12 412 93 HOH HOH . IA 5 HOH A 13 413 156 HOH HOH . IA 5 HOH A 14 414 70 HOH HOH . IA 5 HOH A 15 415 34 HOH HOH . IA 5 HOH A 16 416 61 HOH HOH . IA 5 HOH A 17 417 163 HOH HOH . IA 5 HOH A 18 418 69 HOH HOH . IA 5 HOH A 19 419 17 HOH HOH . IA 5 HOH A 20 420 108 HOH HOH . IA 5 HOH A 21 421 158 HOH HOH . IA 5 HOH A 22 422 94 HOH HOH . IA 5 HOH A 23 423 62 HOH HOH . IA 5 HOH A 24 424 143 HOH HOH . IA 5 HOH A 25 425 13 HOH HOH . IA 5 HOH A 26 426 133 HOH HOH . IA 5 HOH A 27 427 159 HOH HOH . IA 5 HOH A 28 428 136 HOH HOH . IA 5 HOH A 29 429 65 HOH HOH . IA 5 HOH A 30 430 112 HOH HOH . IA 5 HOH A 31 431 27 HOH HOH . IA 5 HOH A 32 432 66 HOH HOH . IA 5 HOH A 33 433 12 HOH HOH . IA 5 HOH A 34 434 60 HOH HOH . IA 5 HOH A 35 435 38 HOH HOH . IA 5 HOH A 36 436 32 HOH HOH . IA 5 HOH A 37 437 122 HOH HOH . IA 5 HOH A 38 438 15 HOH HOH . IA 5 HOH A 39 439 98 HOH HOH . IA 5 HOH A 40 440 7 HOH HOH . IA 5 HOH A 41 441 75 HOH HOH . IA 5 HOH A 42 442 50 HOH HOH . IA 5 HOH A 43 443 21 HOH HOH . IA 5 HOH A 44 444 147 HOH HOH . IA 5 HOH A 45 445 71 HOH HOH . IA 5 HOH A 46 446 132 HOH HOH . IA 5 HOH A 47 447 155 HOH HOH . IA 5 HOH A 48 448 130 HOH HOH . IA 5 HOH A 49 449 40 HOH HOH . IA 5 HOH A 50 450 2 HOH HOH . IA 5 HOH A 51 451 37 HOH HOH . IA 5 HOH A 52 452 3 HOH HOH . IA 5 HOH A 53 453 56 HOH HOH . IA 5 HOH A 54 454 153 HOH HOH . IA 5 HOH A 55 455 24 HOH HOH . IA 5 HOH A 56 456 128 HOH HOH . IA 5 HOH A 57 457 96 HOH HOH . IA 5 HOH A 58 458 124 HOH HOH . IA 5 HOH A 59 459 74 HOH HOH . IA 5 HOH A 60 460 67 HOH HOH . IA 5 HOH A 61 461 36 HOH HOH . IA 5 HOH A 62 462 59 HOH HOH . IA 5 HOH A 63 463 72 HOH HOH . IA 5 HOH A 64 464 97 HOH HOH . IA 5 HOH A 65 465 42 HOH HOH . IA 5 HOH A 66 466 46 HOH HOH . IA 5 HOH A 67 467 109 HOH HOH . IA 5 HOH A 68 468 123 HOH HOH . IA 5 HOH A 69 469 113 HOH HOH . IA 5 HOH A 70 470 106 HOH HOH . IA 5 HOH A 71 471 127 HOH HOH . IA 5 HOH A 72 472 160 HOH HOH . IA 5 HOH A 73 473 68 HOH HOH . IA 5 HOH A 74 474 64 HOH HOH . IA 5 HOH A 75 475 154 HOH HOH . IA 5 HOH A 76 476 111 HOH HOH . IA 5 HOH A 77 477 137 HOH HOH . IA 5 HOH A 78 478 43 HOH HOH . IA 5 HOH A 79 479 51 HOH HOH . IA 5 HOH A 80 480 92 HOH HOH . IA 5 HOH A 81 481 102 HOH HOH . IA 5 HOH A 82 482 134 HOH HOH . IA 5 HOH A 83 483 110 HOH HOH . IA 5 HOH A 84 484 73 HOH HOH . JA 5 HOH B 1 401 101 HOH HOH . JA 5 HOH B 2 402 79 HOH HOH . JA 5 HOH B 3 403 26 HOH HOH . JA 5 HOH B 4 404 22 HOH HOH . JA 5 HOH B 5 405 95 HOH HOH . JA 5 HOH B 6 406 89 HOH HOH . JA 5 HOH B 7 407 157 HOH HOH . JA 5 HOH B 8 408 20 HOH HOH . JA 5 HOH B 9 409 48 HOH HOH . JA 5 HOH B 10 410 148 HOH HOH . JA 5 HOH B 11 411 100 HOH HOH . JA 5 HOH B 12 412 141 HOH HOH . JA 5 HOH B 13 413 6 HOH HOH . JA 5 HOH B 14 414 126 HOH HOH . JA 5 HOH B 15 415 19 HOH HOH . JA 5 HOH B 16 416 29 HOH HOH . JA 5 HOH B 17 417 23 HOH HOH . JA 5 HOH B 18 418 115 HOH HOH . JA 5 HOH B 19 419 86 HOH HOH . JA 5 HOH B 20 420 84 HOH HOH . JA 5 HOH B 21 421 149 HOH HOH . JA 5 HOH B 22 422 88 HOH HOH . JA 5 HOH B 23 423 162 HOH HOH . JA 5 HOH B 24 424 99 HOH HOH . JA 5 HOH B 25 425 39 HOH HOH . JA 5 HOH B 26 426 87 HOH HOH . JA 5 HOH B 27 427 131 HOH HOH . JA 5 HOH B 28 428 103 HOH HOH . JA 5 HOH B 29 429 55 HOH HOH . JA 5 HOH B 30 430 49 HOH HOH . JA 5 HOH B 31 431 78 HOH HOH . JA 5 HOH B 32 432 4 HOH HOH . JA 5 HOH B 33 433 90 HOH HOH . JA 5 HOH B 34 434 25 HOH HOH . JA 5 HOH B 35 435 85 HOH HOH . JA 5 HOH B 36 436 18 HOH HOH . JA 5 HOH B 37 437 57 HOH HOH . JA 5 HOH B 38 438 9 HOH HOH . JA 5 HOH B 39 439 120 HOH HOH . JA 5 HOH B 40 440 11 HOH HOH . JA 5 HOH B 41 441 31 HOH HOH . JA 5 HOH B 42 442 35 HOH HOH . JA 5 HOH B 43 443 114 HOH HOH . JA 5 HOH B 44 444 117 HOH HOH . JA 5 HOH B 45 445 125 HOH HOH . JA 5 HOH B 46 446 118 HOH HOH . JA 5 HOH B 47 447 150 HOH HOH . JA 5 HOH B 48 448 151 HOH HOH . JA 5 HOH B 49 449 30 HOH HOH . JA 5 HOH B 50 450 33 HOH HOH . JA 5 HOH B 51 451 5 HOH HOH . JA 5 HOH B 52 452 1 HOH HOH . JA 5 HOH B 53 453 82 HOH HOH . JA 5 HOH B 54 454 139 HOH HOH . JA 5 HOH B 55 455 107 HOH HOH . JA 5 HOH B 56 456 28 HOH HOH . JA 5 HOH B 57 457 80 HOH HOH . JA 5 HOH B 58 458 91 HOH HOH . JA 5 HOH B 59 459 104 HOH HOH . JA 5 HOH B 60 460 54 HOH HOH . JA 5 HOH B 61 461 58 HOH HOH . JA 5 HOH B 62 462 47 HOH HOH . JA 5 HOH B 63 463 119 HOH HOH . JA 5 HOH B 64 464 129 HOH HOH . JA 5 HOH B 65 465 152 HOH HOH . JA 5 HOH B 66 466 53 HOH HOH . JA 5 HOH B 67 467 83 HOH HOH . JA 5 HOH B 68 468 81 HOH HOH . JA 5 HOH B 69 469 140 HOH HOH . JA 5 HOH B 70 470 144 HOH HOH . JA 5 HOH B 71 471 161 HOH HOH . JA 5 HOH B 72 472 52 HOH HOH . JA 5 HOH B 73 473 138 HOH HOH . JA 5 HOH B 74 474 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . R 4 -17.883 -1.598 -9.261 1 48.55 ? C9 OLC 316 A 1 HETATM 2 C C8 OLC . . . R 4 -17.34 -2.547 -8.215 1 48.86 ? C8 OLC 316 A 1 HETATM 3 C C24 OLC . . . R 4 -20.173 -4.598 4.847 1 51.97 ? C24 OLC 316 A 1 HETATM 4 C C7 OLC . . . R 4 -17.517 -1.997 -6.803 1 52.69 ? C7 OLC 316 A 1 HETATM 5 C C6 OLC . . . R 4 -18.576 -2.764 -6.018 1 49.8 ? C6 OLC 316 A 1 HETATM 6 C C5 OLC . . . R 4 -18.484 -2.437 -4.528 1 54.53 ? C5 OLC 316 A 1 HETATM 7 C C4 OLC . . . R 4 -19.221 -3.482 -3.693 1 51.84 ? C4 OLC 316 A 1 HETATM 8 C C3 OLC . . . R 4 -19.521 -2.965 -2.291 1 46.86 ? C3 OLC 316 A 1 HETATM 9 C C2 OLC . . . R 4 -19.544 -4.104 -1.279 1 50.67 ? C2 OLC 316 A 1 HETATM 10 C C21 OLC . . . R 4 -19.743 -3.741 2.557 1 52.23 ? C21 OLC 316 A 1 HETATM 11 C C1 OLC . . . R 4 -19.904 -3.581 0.087 1 52.86 ? C1 OLC 316 A 1 HETATM 12 C C22 OLC . . . R 4 -19.402 -4.838 3.56 1 52.71 ? C22 OLC 316 A 1 HETATM 13 O O19 OLC . . . R 4 -20.803 -2.774 0.223 1 59.23 ? O19 OLC 316 A 1 HETATM 14 O O25 OLC . . . R 4 -21.073 -5.683 5.098 1 59.41 ? O25 OLC 316 A 1 HETATM 15 O O23 OLC . . . R 4 -19.739 -6.137 3.053 1 63.71 ? O23 OLC 316 A 1 HETATM 16 O O20 OLC . . . R 4 -19.191 -4.012 1.27 1 53.45 ? O20 OLC 316 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #