data_7AVO
#
_model_server_result.job_id            U6cUOaXL59bOIsUAy6QhWQ 
_model_server_result.datetime_utc      '2024-11-13 04:41:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7avo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":308}' 
#
_entry.id    7AVO 
#
_exptl.entry_id    7AVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.75 
_cell.angle_gamma         90 
_cell.entry_id            7AVO 
_cell.length_a            40.688 
_cell.length_b            102.009 
_cell.length_c            56.601 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
'gel filtration' monomeric 1 author_defined_assembly 1 
'gel filtration' monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,CA 1 1 
B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 199 A ASN 199 1_555 A N LYR 200 A LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C LYR 200 A LYR 200 1_555 A N VAL 201 A VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 B C ASN 199 B ASN 199 1_555 B N LYR 200 B LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale4 B C LYR 200 B LYR 200 1_555 B N VAL 201 B VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 194 n n 
C1 H11 LFA sing 195 n n 
C1 H12 LFA sing 196 n n 
C1 H13 LFA sing 197 n n 
C2 C3 LFA sing 198 n n 
C2 H21 LFA sing 199 n n 
C2 H22 LFA sing 200 n n 
C3 C4 LFA sing 201 n n 
C3 H31 LFA sing 202 n n 
C3 H32 LFA sing 203 n n 
C4 C5 LFA sing 204 n n 
C4 H41 LFA sing 205 n n 
C4 H42 LFA sing 206 n n 
C5 C6 LFA sing 207 n n 
C5 H51 LFA sing 208 n n 
C5 H52 LFA sing 209 n n 
C6 C7 LFA sing 210 n n 
C6 H61 LFA sing 211 n n 
C6 H62 LFA sing 212 n n 
C7 C8 LFA sing 213 n n 
C7 H71 LFA sing 214 n n 
C7 H72 LFA sing 215 n n 
C8 C9 LFA sing 216 n n 
C8 H81 LFA sing 217 n n 
C8 H82 LFA sing 218 n n 
C9 C10 LFA sing 219 n n 
C9 H91 LFA sing 220 n n 
C9 H92 LFA sing 221 n n 
C10 C11 LFA sing 222 n n 
C10 H101 LFA sing 223 n n 
C10 H102 LFA sing 224 n n 
C11 C12 LFA sing 225 n n 
C11 H111 LFA sing 226 n n 
C11 H112 LFA sing 227 n n 
C12 C13 LFA sing 228 n n 
C12 H121 LFA sing 229 n n 
C12 H122 LFA sing 230 n n 
C13 C14 LFA sing 231 n n 
C13 H131 LFA sing 232 n n 
C13 H132 LFA sing 233 n n 
C14 C15 LFA sing 234 n n 
C14 H141 LFA sing 235 n n 
C14 H142 LFA sing 236 n n 
C15 C16 LFA sing 237 n n 
C15 H151 LFA sing 238 n n 
C15 H152 LFA sing 239 n n 
C16 C17 LFA sing 240 n n 
C16 H161 LFA sing 241 n n 
C16 H162 LFA sing 242 n n 
C17 C18 LFA sing 243 n n 
C17 H171 LFA sing 244 n n 
C17 H172 LFA sing 245 n n 
C18 C19 LFA sing 246 n n 
C18 H181 LFA sing 247 n n 
C18 H182 LFA sing 248 n n 
C19 C20 LFA sing 249 n n 
C19 H191 LFA sing 250 n n 
C19 H192 LFA sing 251 n n 
C20 H201 LFA sing 252 n n 
C20 H202 LFA sing 253 n n 
C20 H203 LFA sing 254 n n 
#
_atom_sites.entry_id                     7AVO 
_atom_sites.fract_transf_matrix[1][1]    0.024577 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004224 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017927 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LFA A 1 301 1 LFA LFA . 
D 2 LFA A 1 302 4 LFA LFA . 
E 2 LFA A 1 303 5 LFA LFA . 
F 2 LFA A 1 304 9 LFA LFA . 
G 2 LFA A 1 305 10 LFA LFA . 
H 2 LFA A 1 306 12 LFA LFA . 
I 2 LFA A 1 307 17 LFA LFA . 
J 2 LFA A 1 308 18 LFA LFA . 
K 2 LFA A 1 309 19 LFA LFA . 
L 2 LFA A 1 310 21 LFA LFA . 
M 2 LFA A 1 311 22 LFA LFA . 
N 2 LFA A 1 312 24 LFA LFA . 
O 3 OLB A 1 313 1 OLB OLB . 
P 2 LFA B 1 301 2 LFA LFA . 
Q 2 LFA B 1 302 3 LFA LFA . 
R 2 LFA B 1 303 6 LFA LFA . 
S 2 LFA B 1 304 7 LFA LFA . 
T 2 LFA B 1 305 8 LFA LFA . 
U 2 LFA B 1 306 11 LFA LFA . 
V 2 LFA B 1 307 13 LFA LFA . 
W 2 LFA B 1 308 14 LFA LFA . 
X 2 LFA B 1 309 15 LFA LFA . 
Y 2 LFA B 1 310 16 LFA LFA . 
Z 2 LFA B 1 311 20 LFA LFA . 
AA 2 LFA B 1 312 23 LFA LFA . 
BA 4 OLC B 1 313 1 OLC OLC . 
CA 5 HOH A 1 401 44 HOH HOH . 
CA 5 HOH A 2 402 51 HOH HOH . 
CA 5 HOH A 3 403 52 HOH HOH . 
CA 5 HOH A 4 404 40 HOH HOH . 
CA 5 HOH A 5 405 59 HOH HOH . 
CA 5 HOH A 6 406 16 HOH HOH . 
CA 5 HOH A 7 407 42 HOH HOH . 
CA 5 HOH A 8 408 19 HOH HOH . 
CA 5 HOH A 9 409 89 HOH HOH . 
CA 5 HOH A 10 410 36 HOH HOH . 
CA 5 HOH A 11 411 102 HOH HOH . 
CA 5 HOH A 12 412 99 HOH HOH . 
CA 5 HOH A 13 413 50 HOH HOH . 
CA 5 HOH A 14 414 14 HOH HOH . 
CA 5 HOH A 15 415 41 HOH HOH . 
CA 5 HOH A 16 416 29 HOH HOH . 
CA 5 HOH A 17 417 6 HOH HOH . 
CA 5 HOH A 18 418 71 HOH HOH . 
CA 5 HOH A 19 419 60 HOH HOH . 
CA 5 HOH A 20 420 100 HOH HOH . 
CA 5 HOH A 21 421 43 HOH HOH . 
CA 5 HOH A 22 422 72 HOH HOH . 
CA 5 HOH A 23 423 2 HOH HOH . 
CA 5 HOH A 24 424 114 HOH HOH . 
CA 5 HOH A 25 425 10 HOH HOH . 
CA 5 HOH A 26 426 11 HOH HOH . 
CA 5 HOH A 27 427 12 HOH HOH . 
CA 5 HOH A 28 428 23 HOH HOH . 
CA 5 HOH A 29 429 26 HOH HOH . 
CA 5 HOH A 30 430 22 HOH HOH . 
CA 5 HOH A 31 431 18 HOH HOH . 
CA 5 HOH A 32 432 54 HOH HOH . 
CA 5 HOH A 33 433 98 HOH HOH . 
CA 5 HOH A 34 434 101 HOH HOH . 
CA 5 HOH A 35 435 47 HOH HOH . 
CA 5 HOH A 36 436 33 HOH HOH . 
CA 5 HOH A 37 437 1 HOH HOH . 
CA 5 HOH A 38 438 70 HOH HOH . 
CA 5 HOH A 39 439 7 HOH HOH . 
CA 5 HOH A 40 440 107 HOH HOH . 
CA 5 HOH A 41 441 75 HOH HOH . 
CA 5 HOH A 42 442 88 HOH HOH . 
CA 5 HOH A 43 443 82 HOH HOH . 
CA 5 HOH A 44 444 117 HOH HOH . 
CA 5 HOH A 45 445 115 HOH HOH . 
CA 5 HOH A 46 446 106 HOH HOH . 
CA 5 HOH A 47 447 25 HOH HOH . 
CA 5 HOH A 48 448 58 HOH HOH . 
CA 5 HOH A 49 449 104 HOH HOH . 
CA 5 HOH A 50 450 93 HOH HOH . 
CA 5 HOH A 51 451 67 HOH HOH . 
CA 5 HOH A 52 452 103 HOH HOH . 
CA 5 HOH A 53 453 49 HOH HOH . 
CA 5 HOH A 54 454 92 HOH HOH . 
CA 5 HOH A 55 455 53 HOH HOH . 
CA 5 HOH A 56 456 24 HOH HOH . 
DA 5 HOH B 1 401 91 HOH HOH . 
DA 5 HOH B 2 402 55 HOH HOH . 
DA 5 HOH B 3 403 79 HOH HOH . 
DA 5 HOH B 4 404 57 HOH HOH . 
DA 5 HOH B 5 405 63 HOH HOH . 
DA 5 HOH B 6 406 30 HOH HOH . 
DA 5 HOH B 7 407 17 HOH HOH . 
DA 5 HOH B 8 408 32 HOH HOH . 
DA 5 HOH B 9 409 90 HOH HOH . 
DA 5 HOH B 10 410 86 HOH HOH . 
DA 5 HOH B 11 411 20 HOH HOH . 
DA 5 HOH B 12 412 95 HOH HOH . 
DA 5 HOH B 13 413 64 HOH HOH . 
DA 5 HOH B 14 414 9 HOH HOH . 
DA 5 HOH B 15 415 45 HOH HOH . 
DA 5 HOH B 16 416 112 HOH HOH . 
DA 5 HOH B 17 417 39 HOH HOH . 
DA 5 HOH B 18 418 78 HOH HOH . 
DA 5 HOH B 19 419 62 HOH HOH . 
DA 5 HOH B 20 420 105 HOH HOH . 
DA 5 HOH B 21 421 21 HOH HOH . 
DA 5 HOH B 22 422 4 HOH HOH . 
DA 5 HOH B 23 423 38 HOH HOH . 
DA 5 HOH B 24 424 46 HOH HOH . 
DA 5 HOH B 25 425 5 HOH HOH . 
DA 5 HOH B 26 426 56 HOH HOH . 
DA 5 HOH B 27 427 74 HOH HOH . 
DA 5 HOH B 28 428 34 HOH HOH . 
DA 5 HOH B 29 429 13 HOH HOH . 
DA 5 HOH B 30 430 111 HOH HOH . 
DA 5 HOH B 31 431 31 HOH HOH . 
DA 5 HOH B 32 432 8 HOH HOH . 
DA 5 HOH B 33 433 113 HOH HOH . 
DA 5 HOH B 34 434 68 HOH HOH . 
DA 5 HOH B 35 435 87 HOH HOH . 
DA 5 HOH B 36 436 28 HOH HOH . 
DA 5 HOH B 37 437 48 HOH HOH . 
DA 5 HOH B 38 438 94 HOH HOH . 
DA 5 HOH B 39 439 109 HOH HOH . 
DA 5 HOH B 40 440 3 HOH HOH . 
DA 5 HOH B 41 441 27 HOH HOH . 
DA 5 HOH B 42 442 15 HOH HOH . 
DA 5 HOH B 43 443 77 HOH HOH . 
DA 5 HOH B 44 444 76 HOH HOH . 
DA 5 HOH B 45 445 108 HOH HOH . 
DA 5 HOH B 46 446 81 HOH HOH . 
DA 5 HOH B 47 447 61 HOH HOH . 
DA 5 HOH B 48 448 73 HOH HOH . 
DA 5 HOH B 49 449 66 HOH HOH . 
DA 5 HOH B 50 450 69 HOH HOH . 
DA 5 HOH B 51 451 85 HOH HOH . 
DA 5 HOH B 52 452 80 HOH HOH . 
DA 5 HOH B 53 453 65 HOH HOH . 
DA 5 HOH B 54 454 96 HOH HOH . 
DA 5 HOH B 55 455 116 HOH HOH . 
DA 5 HOH B 56 456 97 HOH HOH . 
DA 5 HOH B 57 457 110 HOH HOH . 
DA 5 HOH B 58 458 35 HOH HOH . 
DA 5 HOH B 59 459 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . J 2 -12.632 6.959 23.343 1 48.11 ? C1 LFA 308 A 1 
HETATM 2 C C2 LFA . . . J 2 -11.864 5.637 23.468 1 50.14 ? C2 LFA 308 A 1 
HETATM 3 C C3 LFA . . . J 2 -12.8 4.424 23.329 1 50.51 ? C3 LFA 308 A 1 
HETATM 4 C C4 LFA . . . J 2 -12.219 3.172 23.991 1 45 ? C4 LFA 308 A 1 
HETATM 5 C C5 LFA . . . J 2 -13.216 2.006 23.949 1 47.71 ? C5 LFA 308 A 1 
HETATM 6 C C6 LFA . . . J 2 -13.247 1.256 25.278 1 42.22 ? C6 LFA 308 A 1 
HETATM 7 C C7 LFA . . . J 2 -13.949 -0.1 25.191 1 36.65 ? C7 LFA 308 A 1 
HETATM 8 C C8 LFA . . . J 2 -13.558 -0.917 23.957 1 45.71 ? C8 LFA 308 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#