data_7AVO # _model_server_result.job_id 0TQ6TP3KrDxocQm6iKSDqQ _model_server_result.datetime_utc '2024-11-23 09:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7avo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":313}' # _entry.id 7AVO # _exptl.entry_id 7AVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.75 _cell.angle_gamma 90 _cell.entry_id 7AVO _cell.length_a 40.688 _cell.length_b 102.009 _cell.length_c 56.601 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 'gel filtration' monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,CA 1 1 B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 199 A ASN 199 1_555 A N LYR 200 A LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C LYR 200 A LYR 200 1_555 A N VAL 201 A VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C ASN 199 B ASN 199 1_555 B N LYR 200 B LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C LYR 200 B LYR 200 1_555 B N VAL 201 B VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 370 n n C1 O20 OLB sing 371 n n C2 C1 OLB sing 372 n n C3 C2 OLB sing 373 n n C4 C3 OLB sing 374 n n C5 C4 OLB sing 375 n n C5 C6 OLB sing 376 n n O20 C21 OLB sing 377 n n C21 C22 OLB sing 378 n n C22 C24 OLB sing 379 n n O23 C22 OLB sing 380 n n C24 O25 OLB sing 381 n n C6 C7 OLB sing 382 n n C7 C8 OLB sing 383 n n C8 C9 OLB sing 384 n n C9 C10 OLB doub 385 z n C10 C11 OLB sing 386 n n C2 H2 OLB sing 387 n n C2 H2A OLB sing 388 n n C3 H3 OLB sing 389 n n C3 H3A OLB sing 390 n n C4 H4 OLB sing 391 n n C4 H4A OLB sing 392 n n C5 H5 OLB sing 393 n n C5 H5A OLB sing 394 n n C21 H21 OLB sing 395 n n C21 H21A OLB sing 396 n n C22 H22 OLB sing 397 n n O23 HO23 OLB sing 398 n n C24 H24 OLB sing 399 n n C24 H24A OLB sing 400 n n O25 HO25 OLB sing 401 n n C6 H16 OLB sing 402 n n C6 H17 OLB sing 403 n n C7 H18 OLB sing 404 n n C7 H19 OLB sing 405 n n C8 H20 OLB sing 406 n n C8 H211 OLB sing 407 n n C9 H221 OLB sing 408 n n C10 H23 OLB sing 409 n n C11 H241 OLB sing 410 n n C11 H25 OLB sing 411 n n C11 C12 OLB sing 412 n n C12 H26 OLB sing 413 n n C12 C13 OLB sing 414 n n C12 H27 OLB sing 415 n n C13 C14 OLB sing 416 n n C13 H28 OLB sing 417 n n C13 H29 OLB sing 418 n n C14 H30 OLB sing 419 n n C14 H31 OLB sing 420 n n C14 C15 OLB sing 421 n n C15 C16 OLB sing 422 n n C15 H32 OLB sing 423 n n C15 H33 OLB sing 424 n n C16 H34 OLB sing 425 n n C16 H35 OLB sing 426 n n C16 C17 OLB sing 427 n n C17 C18 OLB sing 428 n n C17 H36 OLB sing 429 n n C17 H37 OLB sing 430 n n C18 H38 OLB sing 431 n n C18 H39 OLB sing 432 n n C18 H40 OLB sing 433 n n # _atom_sites.entry_id 7AVO _atom_sites.fract_transf_matrix[1][1] 0.024577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 301 1 LFA LFA . D 2 LFA A 1 302 4 LFA LFA . E 2 LFA A 1 303 5 LFA LFA . F 2 LFA A 1 304 9 LFA LFA . G 2 LFA A 1 305 10 LFA LFA . H 2 LFA A 1 306 12 LFA LFA . I 2 LFA A 1 307 17 LFA LFA . J 2 LFA A 1 308 18 LFA LFA . K 2 LFA A 1 309 19 LFA LFA . L 2 LFA A 1 310 21 LFA LFA . M 2 LFA A 1 311 22 LFA LFA . N 2 LFA A 1 312 24 LFA LFA . O 3 OLB A 1 313 1 OLB OLB . P 2 LFA B 1 301 2 LFA LFA . Q 2 LFA B 1 302 3 LFA LFA . R 2 LFA B 1 303 6 LFA LFA . S 2 LFA B 1 304 7 LFA LFA . T 2 LFA B 1 305 8 LFA LFA . U 2 LFA B 1 306 11 LFA LFA . V 2 LFA B 1 307 13 LFA LFA . W 2 LFA B 1 308 14 LFA LFA . X 2 LFA B 1 309 15 LFA LFA . Y 2 LFA B 1 310 16 LFA LFA . Z 2 LFA B 1 311 20 LFA LFA . AA 2 LFA B 1 312 23 LFA LFA . BA 4 OLC B 1 313 1 OLC OLC . CA 5 HOH A 1 401 44 HOH HOH . CA 5 HOH A 2 402 51 HOH HOH . CA 5 HOH A 3 403 52 HOH HOH . CA 5 HOH A 4 404 40 HOH HOH . CA 5 HOH A 5 405 59 HOH HOH . CA 5 HOH A 6 406 16 HOH HOH . CA 5 HOH A 7 407 42 HOH HOH . CA 5 HOH A 8 408 19 HOH HOH . CA 5 HOH A 9 409 89 HOH HOH . CA 5 HOH A 10 410 36 HOH HOH . CA 5 HOH A 11 411 102 HOH HOH . CA 5 HOH A 12 412 99 HOH HOH . CA 5 HOH A 13 413 50 HOH HOH . CA 5 HOH A 14 414 14 HOH HOH . CA 5 HOH A 15 415 41 HOH HOH . CA 5 HOH A 16 416 29 HOH HOH . CA 5 HOH A 17 417 6 HOH HOH . CA 5 HOH A 18 418 71 HOH HOH . CA 5 HOH A 19 419 60 HOH HOH . CA 5 HOH A 20 420 100 HOH HOH . CA 5 HOH A 21 421 43 HOH HOH . CA 5 HOH A 22 422 72 HOH HOH . CA 5 HOH A 23 423 2 HOH HOH . CA 5 HOH A 24 424 114 HOH HOH . CA 5 HOH A 25 425 10 HOH HOH . CA 5 HOH A 26 426 11 HOH HOH . CA 5 HOH A 27 427 12 HOH HOH . CA 5 HOH A 28 428 23 HOH HOH . CA 5 HOH A 29 429 26 HOH HOH . CA 5 HOH A 30 430 22 HOH HOH . CA 5 HOH A 31 431 18 HOH HOH . CA 5 HOH A 32 432 54 HOH HOH . CA 5 HOH A 33 433 98 HOH HOH . CA 5 HOH A 34 434 101 HOH HOH . CA 5 HOH A 35 435 47 HOH HOH . CA 5 HOH A 36 436 33 HOH HOH . CA 5 HOH A 37 437 1 HOH HOH . CA 5 HOH A 38 438 70 HOH HOH . CA 5 HOH A 39 439 7 HOH HOH . CA 5 HOH A 40 440 107 HOH HOH . CA 5 HOH A 41 441 75 HOH HOH . CA 5 HOH A 42 442 88 HOH HOH . CA 5 HOH A 43 443 82 HOH HOH . CA 5 HOH A 44 444 117 HOH HOH . CA 5 HOH A 45 445 115 HOH HOH . CA 5 HOH A 46 446 106 HOH HOH . CA 5 HOH A 47 447 25 HOH HOH . CA 5 HOH A 48 448 58 HOH HOH . CA 5 HOH A 49 449 104 HOH HOH . CA 5 HOH A 50 450 93 HOH HOH . CA 5 HOH A 51 451 67 HOH HOH . CA 5 HOH A 52 452 103 HOH HOH . CA 5 HOH A 53 453 49 HOH HOH . CA 5 HOH A 54 454 92 HOH HOH . CA 5 HOH A 55 455 53 HOH HOH . CA 5 HOH A 56 456 24 HOH HOH . DA 5 HOH B 1 401 91 HOH HOH . DA 5 HOH B 2 402 55 HOH HOH . DA 5 HOH B 3 403 79 HOH HOH . DA 5 HOH B 4 404 57 HOH HOH . DA 5 HOH B 5 405 63 HOH HOH . DA 5 HOH B 6 406 30 HOH HOH . DA 5 HOH B 7 407 17 HOH HOH . DA 5 HOH B 8 408 32 HOH HOH . DA 5 HOH B 9 409 90 HOH HOH . DA 5 HOH B 10 410 86 HOH HOH . DA 5 HOH B 11 411 20 HOH HOH . DA 5 HOH B 12 412 95 HOH HOH . DA 5 HOH B 13 413 64 HOH HOH . DA 5 HOH B 14 414 9 HOH HOH . DA 5 HOH B 15 415 45 HOH HOH . DA 5 HOH B 16 416 112 HOH HOH . DA 5 HOH B 17 417 39 HOH HOH . DA 5 HOH B 18 418 78 HOH HOH . DA 5 HOH B 19 419 62 HOH HOH . DA 5 HOH B 20 420 105 HOH HOH . DA 5 HOH B 21 421 21 HOH HOH . DA 5 HOH B 22 422 4 HOH HOH . DA 5 HOH B 23 423 38 HOH HOH . DA 5 HOH B 24 424 46 HOH HOH . DA 5 HOH B 25 425 5 HOH HOH . DA 5 HOH B 26 426 56 HOH HOH . DA 5 HOH B 27 427 74 HOH HOH . DA 5 HOH B 28 428 34 HOH HOH . DA 5 HOH B 29 429 13 HOH HOH . DA 5 HOH B 30 430 111 HOH HOH . DA 5 HOH B 31 431 31 HOH HOH . DA 5 HOH B 32 432 8 HOH HOH . DA 5 HOH B 33 433 113 HOH HOH . DA 5 HOH B 34 434 68 HOH HOH . DA 5 HOH B 35 435 87 HOH HOH . DA 5 HOH B 36 436 28 HOH HOH . DA 5 HOH B 37 437 48 HOH HOH . DA 5 HOH B 38 438 94 HOH HOH . DA 5 HOH B 39 439 109 HOH HOH . DA 5 HOH B 40 440 3 HOH HOH . DA 5 HOH B 41 441 27 HOH HOH . DA 5 HOH B 42 442 15 HOH HOH . DA 5 HOH B 43 443 77 HOH HOH . DA 5 HOH B 44 444 76 HOH HOH . DA 5 HOH B 45 445 108 HOH HOH . DA 5 HOH B 46 446 81 HOH HOH . DA 5 HOH B 47 447 61 HOH HOH . DA 5 HOH B 48 448 73 HOH HOH . DA 5 HOH B 49 449 66 HOH HOH . DA 5 HOH B 50 450 69 HOH HOH . DA 5 HOH B 51 451 85 HOH HOH . DA 5 HOH B 52 452 80 HOH HOH . DA 5 HOH B 53 453 65 HOH HOH . DA 5 HOH B 54 454 96 HOH HOH . DA 5 HOH B 55 455 116 HOH HOH . DA 5 HOH B 56 456 97 HOH HOH . DA 5 HOH B 57 457 110 HOH HOH . DA 5 HOH B 58 458 35 HOH HOH . DA 5 HOH B 59 459 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . O 3 13.237 -1.449 21.064 1 71.59 ? C1 OLB 313 A 1 HETATM 2 C C2 OLB . . . O 3 13.853 -0.245 21.724 1 61.55 ? C2 OLB 313 A 1 HETATM 3 C C3 OLB . . . O 3 13.059 1.002 21.358 1 60.8 ? C3 OLB 313 A 1 HETATM 4 C C4 OLB . . . O 3 14.002 2.172 21.13 1 58.39 ? C4 OLB 313 A 1 HETATM 5 C C5 OLB . . . O 3 13.443 3.468 21.698 1 56.98 ? C5 OLB 313 A 1 HETATM 6 O O19 OLB . . . O 3 12.887 -1.419 19.893 1 75.31 ? O19 OLB 313 A 1 HETATM 7 O O20 OLB . . . O 3 13.059 -2.67 21.823 1 75.28 ? O20 OLB 313 A 1 HETATM 8 C C21 OLB . . . O 3 13.46 -3.91 21.248 1 71.57 ? C21 OLB 313 A 1 HETATM 9 C C22 OLB . . . O 3 14.362 -4.631 22.234 1 66.33 ? C22 OLB 313 A 1 HETATM 10 O O23 OLB . . . O 3 14.335 -3.925 23.478 1 69.64 ? O23 OLB 313 A 1 HETATM 11 C C24 OLB . . . O 3 13.872 -6.06 22.421 1 66.29 ? C24 OLB 313 A 1 HETATM 12 O O25 OLB . . . O 3 13.692 -6.682 21.142 1 71.74 ? O25 OLB 313 A 1 HETATM 13 C C6 OLB . . . O 3 14.556 4.502 21.742 1 57.68 ? C6 OLB 313 A 1 HETATM 14 C C7 OLB . . . O 3 14.009 5.917 21.681 1 53.48 ? C7 OLB 313 A 1 HETATM 15 C C8 OLB . . . O 3 15.158 6.914 21.754 1 53.88 ? C8 OLB 313 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #