data_7AVZ # _model_server_result.job_id 6lH6aqxvpZ8nKw1cRMAxSQ _model_server_result.datetime_utc '2024-10-28 11:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7avz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7AVZ # _exptl.entry_id 7AVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-N2-(4-(cyclopropylmethoxy)-3,5-difluorophenyl)-5-(3-methylpiperazin-1-yl)-N4-(tetrahydro-2H-pyran-4-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AVZ _cell.length_a 92.64 _cell.length_b 93.32 _cell.length_c 71.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details 'gel filtration' _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 F2 N6 O2' _chem_comp.formula_weight 474.547 _chem_comp.id S4N _chem_comp.mon_nstd_flag . _chem_comp.name (R)-N2-(4-(cyclopropylmethoxy)-3,5-difluorophenyl)-5-(3-methylpiperazin-1-yl)-N4-(tetrahydro-2H-pyran-4-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}2-[4-(cyclopropylmethoxy)-3,5-bis(fluoranyl)phenyl]-5-[(3~{R})-3-methylpiperazin-1-yl]-~{N}4-(oxan-4-yl)pyrimidine-2,4-diamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 S4N sing 277 n n C1 N1 S4N sing 278 n n C1 C2 S4N sing 279 n n N1 C4 S4N sing 280 n n C2 N S4N sing 281 n n C4 C3 S4N sing 282 n n N C3 S4N sing 283 n n N C5 S4N sing 284 n n C5 C6 S4N doub 285 n y C5 C8 S4N sing 286 n y C6 N2 S4N sing 287 n y N4 C8 S4N sing 288 n n N4 C9 S4N sing 289 n n C10 C9 S4N sing 290 n n C10 C11 S4N sing 291 n n C8 N3 S4N doub 292 n y C9 C13 S4N sing 293 n n N2 C7 S4N doub 294 n y C11 O S4N sing 295 n n C13 C12 S4N sing 296 n n N3 C7 S4N sing 297 n y O C12 S4N sing 298 n n C7 N5 S4N sing 299 n n N5 C14 S4N sing 300 n n C15 C14 S4N doub 301 n y C15 C16 S4N sing 302 n y C14 C19 S4N sing 303 n y F1 C16 S4N sing 304 n n C16 C17 S4N doub 305 n y C19 C18 S4N doub 306 n y C17 C18 S4N sing 307 n y C17 O1 S4N sing 308 n n C18 F S4N sing 309 n n C21 C22 S4N sing 310 n n C21 C23 S4N sing 311 n n C21 C20 S4N sing 312 n n O1 C20 S4N sing 313 n n C22 C23 S4N sing 314 n n C1 H1 S4N sing 315 n n C2 H2 S4N sing 316 n n C2 H3 S4N sing 317 n n C3 H4 S4N sing 318 n n C3 H5 S4N sing 319 n n C9 H6 S4N sing 320 n n C10 H7 S4N sing 321 n n C10 H8 S4N sing 322 n n C11 H9 S4N sing 323 n n C11 H10 S4N sing 324 n n C12 H11 S4N sing 325 n n C12 H12 S4N sing 326 n n C13 H13 S4N sing 327 n n C13 H14 S4N sing 328 n n C15 H15 S4N sing 329 n n C19 H16 S4N sing 330 n n C20 H17 S4N sing 331 n n C20 H18 S4N sing 332 n n C21 H19 S4N sing 333 n n C22 H20 S4N sing 334 n n C22 H21 S4N sing 335 n n C23 H22 S4N sing 336 n n C23 H23 S4N sing 337 n n N5 H24 S4N sing 338 n n C6 H25 S4N sing 339 n n N4 H26 S4N sing 340 n n C4 H27 S4N sing 341 n n C4 H28 S4N sing 342 n n N1 H29 S4N sing 343 n n C H31 S4N sing 344 n n C H32 S4N sing 345 n n C H33 S4N sing 346 n n # _atom_sites.entry_id 7AVZ _atom_sites.fract_transf_matrix[1][1] 0.010794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S4N A 1 901 1 S4N INH . C 3 HOH A 1 1001 74 HOH HOH . C 3 HOH A 2 1002 49 HOH HOH . C 3 HOH A 3 1003 28 HOH HOH . C 3 HOH A 4 1004 19 HOH HOH . C 3 HOH A 5 1005 41 HOH HOH . C 3 HOH A 6 1006 15 HOH HOH . C 3 HOH A 7 1007 10 HOH HOH . C 3 HOH A 8 1008 21 HOH HOH . C 3 HOH A 9 1009 29 HOH HOH . C 3 HOH A 10 1010 22 HOH HOH . C 3 HOH A 11 1011 3 HOH HOH . C 3 HOH A 12 1012 16 HOH HOH . C 3 HOH A 13 1013 5 HOH HOH . C 3 HOH A 14 1014 36 HOH HOH . C 3 HOH A 15 1015 18 HOH HOH . C 3 HOH A 16 1016 13 HOH HOH . C 3 HOH A 17 1017 40 HOH HOH . C 3 HOH A 18 1018 27 HOH HOH . C 3 HOH A 19 1019 44 HOH HOH . C 3 HOH A 20 1020 66 HOH HOH . C 3 HOH A 21 1021 72 HOH HOH . C 3 HOH A 22 1022 17 HOH HOH . C 3 HOH A 23 1023 39 HOH HOH . C 3 HOH A 24 1024 64 HOH HOH . C 3 HOH A 25 1025 42 HOH HOH . C 3 HOH A 26 1026 1 HOH HOH . C 3 HOH A 27 1027 2 HOH HOH . C 3 HOH A 28 1028 24 HOH HOH . C 3 HOH A 29 1029 14 HOH HOH . C 3 HOH A 30 1030 26 HOH HOH . C 3 HOH A 31 1031 58 HOH HOH . C 3 HOH A 32 1032 57 HOH HOH . C 3 HOH A 33 1033 30 HOH HOH . C 3 HOH A 34 1034 11 HOH HOH . C 3 HOH A 35 1035 4 HOH HOH . C 3 HOH A 36 1036 65 HOH HOH . C 3 HOH A 37 1037 70 HOH HOH . C 3 HOH A 38 1038 38 HOH HOH . C 3 HOH A 39 1039 31 HOH HOH . C 3 HOH A 40 1040 54 HOH HOH . C 3 HOH A 41 1041 52 HOH HOH . C 3 HOH A 42 1042 67 HOH HOH . C 3 HOH A 43 1043 23 HOH HOH . C 3 HOH A 44 1044 33 HOH HOH . C 3 HOH A 45 1045 53 HOH HOH . C 3 HOH A 46 1046 25 HOH HOH . C 3 HOH A 47 1047 48 HOH HOH . C 3 HOH A 48 1048 35 HOH HOH . C 3 HOH A 49 1049 68 HOH HOH . C 3 HOH A 50 1050 62 HOH HOH . C 3 HOH A 51 1051 56 HOH HOH . C 3 HOH A 52 1052 8 HOH HOH . C 3 HOH A 53 1053 43 HOH HOH . C 3 HOH A 54 1054 20 HOH HOH . C 3 HOH A 55 1055 9 HOH HOH . C 3 HOH A 56 1056 47 HOH HOH . C 3 HOH A 57 1057 32 HOH HOH . C 3 HOH A 58 1058 46 HOH HOH . C 3 HOH A 59 1059 76 HOH HOH . C 3 HOH A 60 1060 60 HOH HOH . C 3 HOH A 61 1061 77 HOH HOH . C 3 HOH A 62 1062 61 HOH HOH . C 3 HOH A 63 1063 12 HOH HOH . C 3 HOH A 64 1064 50 HOH HOH . C 3 HOH A 65 1065 51 HOH HOH . C 3 HOH A 66 1066 71 HOH HOH . C 3 HOH A 67 1067 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S4N . . . B 2 19.914 27.209 -25.053 1 57.02 ? C1 S4N 901 A 1 HETATM 2 C C2 S4N . . . B 2 20.66 27.808 -23.808 1 56.31 ? C2 S4N 901 A 1 HETATM 3 C C3 S4N . . . B 2 19.058 26.616 -22.336 1 55.78 ? C3 S4N 901 A 1 HETATM 4 C C7 S4N . . . B 2 21.628 29.204 -19.106 1 46.45 ? C7 S4N 901 A 1 HETATM 5 C C8 S4N . . . B 2 19.805 29.151 -20.512 1 51.95 ? C8 S4N 901 A 1 HETATM 6 C C9 S4N . . . B 2 17.776 30.404 -19.88 1 55.73 ? C9 S4N 901 A 1 HETATM 7 C C10 S4N . . . B 2 17.446 31.739 -20.526 1 57.03 ? C10 S4N 901 A 1 HETATM 8 C C11 S4N . . . B 2 16.587 32.56 -19.59 1 59.52 ? C11 S4N 901 A 1 HETATM 9 C C12 S4N . . . B 2 15.721 30.639 -18.529 1 59.39 ? C12 S4N 901 A 1 HETATM 10 C C13 S4N . . . B 2 16.511 29.702 -19.411 1 58.37 ? C13 S4N 901 A 1 HETATM 11 C C14 S4N . . . B 2 21.581 30.466 -16.952 1 48.08 ? C14 S4N 901 A 1 HETATM 12 C C15 S4N . . . B 2 20.748 31.531 -17.292 1 50.31 ? C15 S4N 901 A 1 HETATM 13 C C16 S4N . . . B 2 20.174 32.272 -16.289 1 51.94 ? C16 S4N 901 A 1 HETATM 14 C C19 S4N . . . B 2 21.81 30.167 -15.611 1 49.81 ? C19 S4N 901 A 1 HETATM 15 C C20 S4N . . . B 2 18.722 32.155 -13.246 1 59.38 ? C20 S4N 901 A 1 HETATM 16 C C21 S4N . . . B 2 17.497 31.979 -14.125 1 60.69 ? C21 S4N 901 A 1 HETATM 17 C C22 S4N . . . B 2 16.477 30.967 -13.732 1 60.74 ? C22 S4N 901 A 1 HETATM 18 F F1 S4N . . . B 2 19.37 33.305 -16.63 1 53.29 ? F1 S4N 901 A 1 HETATM 19 C C17 S4N . . . B 2 20.372 32.018 -14.936 1 53.87 ? C17 S4N 901 A 1 HETATM 20 O O1 S4N . . . B 2 19.734 32.834 -14.009 1 56.35 ? O1 S4N 901 A 1 HETATM 21 C C23 S4N . . . B 2 16.164 32.417 -13.632 1 61.07 ? C23 S4N 901 A 1 HETATM 22 C C18 S4N . . . B 2 21.21 30.941 -14.648 1 53.53 ? C18 S4N 901 A 1 HETATM 23 F F S4N . . . B 2 21.441 30.644 -13.354 1 56.93 ? F S4N 901 A 1 HETATM 24 N N5 S4N . . . B 2 22.184 29.677 -17.954 1 45.26 ? N5 S4N 901 A 1 HETATM 25 N N2 S4N . . . B 2 22.38 28.384 -19.851 1 46.85 ? N2 S4N 901 A 1 HETATM 26 C C6 S4N . . . B 2 21.808 27.931 -20.974 1 48.88 ? C6 S4N 901 A 1 HETATM 27 N N3 S4N . . . B 2 20.378 29.603 -19.385 1 49.03 ? N3 S4N 901 A 1 HETATM 28 N N4 S4N . . . B 2 18.548 29.558 -20.784 1 53.7 ? N4 S4N 901 A 1 HETATM 29 O O S4N . . . B 2 15.397 31.852 -19.221 1 60.52 ? O S4N 901 A 1 HETATM 30 C C5 S4N . . . B 2 20.518 28.272 -21.377 1 52.22 ? C5 S4N 901 A 1 HETATM 31 N N S4N . . . B 2 19.899 27.799 -22.556 1 55.44 ? N S4N 901 A 1 HETATM 32 C C4 S4N . . . B 2 18.162 26.354 -23.53 1 55.78 ? C4 S4N 901 A 1 HETATM 33 N N1 S4N . . . B 2 18.979 26.07 -24.715 1 56.4 ? N1 S4N 901 A 1 HETATM 34 C C S4N . . . B 2 20.891 26.706 -26.104 1 55.51 ? C S4N 901 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #