data_7AWD # _model_server_result.job_id '_cDzu1Z9CN70uN-InnTDBQ' _model_server_result.datetime_utc '2024-11-27 06:07:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7awd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7AWD # _exptl.entry_id 7AWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.588 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AWD _cell.length_a 65.369 _cell.length_b 65.369 _cell.length_c 156.545 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C27 H38 O4' _chem_comp.formula_weight 426.588 _chem_comp.id NQD _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'garcinoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 NQD sing 270 n n C05 C06 NQD doub 271 z n C07 C06 NQD sing 272 n n C03 C04 NQD sing 273 n n C03 C02 NQD sing 274 n n C06 C08 NQD sing 275 n n C02 C11 NQD doub 276 e n C02 C01 NQD sing 277 n n C11 C12 NQD sing 278 n n C08 O09 NQD doub 279 n n C08 O10 NQD sing 280 n n C12 C13 NQD sing 281 n n C13 C14 NQD sing 282 n n C15 C14 NQD sing 283 n n C14 C16 NQD doub 284 e n O31 C25 NQD sing 285 n n C26 C25 NQD doub 286 n y C26 C27 NQD sing 287 n y C25 C24 NQD sing 288 n y C30 C27 NQD sing 289 n n C27 C28 NQD doub 290 n y C16 C17 NQD sing 291 n n C24 C23 NQD doub 292 n y C28 C23 NQD sing 293 n y C28 O29 NQD sing 294 n n C17 C18 NQD sing 295 n n C23 C22 NQD sing 296 n n O29 C19 NQD sing 297 n n C22 C21 NQD sing 298 n n C18 C19 NQD sing 299 n n C21 C19 NQD sing 300 n n C19 C20 NQD sing 301 n n C12 H1 NQD sing 302 n n C12 H2 NQD sing 303 n n C11 H3 NQD sing 304 n n C01 H4 NQD sing 305 n n C01 H5 NQD sing 306 n n C01 H6 NQD sing 307 n n C03 H7 NQD sing 308 n n C03 H8 NQD sing 309 n n C04 H9 NQD sing 310 n n C04 H10 NQD sing 311 n n C05 H11 NQD sing 312 n n C07 H12 NQD sing 313 n n C07 H13 NQD sing 314 n n C07 H14 NQD sing 315 n n C13 H15 NQD sing 316 n n C13 H16 NQD sing 317 n n C15 H17 NQD sing 318 n n C15 H18 NQD sing 319 n n C15 H19 NQD sing 320 n n C16 H20 NQD sing 321 n n C17 H21 NQD sing 322 n n C17 H22 NQD sing 323 n n C18 H23 NQD sing 324 n n C18 H24 NQD sing 325 n n C20 H25 NQD sing 326 n n C20 H26 NQD sing 327 n n C20 H27 NQD sing 328 n n C21 H28 NQD sing 329 n n C21 H29 NQD sing 330 n n C22 H30 NQD sing 331 n n C22 H31 NQD sing 332 n n C24 H32 NQD sing 333 n n C26 H33 NQD sing 334 n n C30 H34 NQD sing 335 n n C30 H35 NQD sing 336 n n C30 H36 NQD sing 337 n n O10 H37 NQD sing 338 n n O31 H38 NQD sing 339 n n # _atom_sites.entry_id 7AWD _atom_sites.fract_transf_matrix[1][1] 0.015298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NQD A 1 501 1 NQD YYY . C 2 NQD A 1 502 2 NQD YYY . D 3 CIT A 1 503 1 CIT CIT . E 4 GOL A 1 504 3 GOL GOL . F 4 GOL A 1 505 4 GOL GOL . G 4 GOL A 1 506 5 GOL GOL . H 5 HOH A 1 601 57 HOH HOH . H 5 HOH A 2 602 124 HOH HOH . H 5 HOH A 3 603 143 HOH HOH . H 5 HOH A 4 604 65 HOH HOH . H 5 HOH A 5 605 23 HOH HOH . H 5 HOH A 6 606 102 HOH HOH . H 5 HOH A 7 607 129 HOH HOH . H 5 HOH A 8 608 51 HOH HOH . H 5 HOH A 9 609 118 HOH HOH . H 5 HOH A 10 610 47 HOH HOH . H 5 HOH A 11 611 60 HOH HOH . H 5 HOH A 12 612 119 HOH HOH . H 5 HOH A 13 613 131 HOH HOH . H 5 HOH A 14 614 53 HOH HOH . H 5 HOH A 15 615 56 HOH HOH . H 5 HOH A 16 616 78 HOH HOH . H 5 HOH A 17 617 13 HOH HOH . H 5 HOH A 18 618 136 HOH HOH . H 5 HOH A 19 619 74 HOH HOH . H 5 HOH A 20 620 42 HOH HOH . H 5 HOH A 21 621 142 HOH HOH . H 5 HOH A 22 622 43 HOH HOH . H 5 HOH A 23 623 16 HOH HOH . H 5 HOH A 24 624 17 HOH HOH . H 5 HOH A 25 625 69 HOH HOH . H 5 HOH A 26 626 90 HOH HOH . H 5 HOH A 27 627 130 HOH HOH . H 5 HOH A 28 628 93 HOH HOH . H 5 HOH A 29 629 38 HOH HOH . H 5 HOH A 30 630 15 HOH HOH . H 5 HOH A 31 631 88 HOH HOH . H 5 HOH A 32 632 41 HOH HOH . H 5 HOH A 33 633 54 HOH HOH . H 5 HOH A 34 634 1 HOH HOH . H 5 HOH A 35 635 2 HOH HOH . H 5 HOH A 36 636 29 HOH HOH . H 5 HOH A 37 637 132 HOH HOH . H 5 HOH A 38 638 63 HOH HOH . H 5 HOH A 39 639 97 HOH HOH . H 5 HOH A 40 640 34 HOH HOH . H 5 HOH A 41 641 114 HOH HOH . H 5 HOH A 42 642 50 HOH HOH . H 5 HOH A 43 643 55 HOH HOH . H 5 HOH A 44 644 125 HOH HOH . H 5 HOH A 45 645 62 HOH HOH . H 5 HOH A 46 646 33 HOH HOH . H 5 HOH A 47 647 73 HOH HOH . H 5 HOH A 48 648 79 HOH HOH . H 5 HOH A 49 649 30 HOH HOH . H 5 HOH A 50 650 10 HOH HOH . H 5 HOH A 51 651 76 HOH HOH . H 5 HOH A 52 652 14 HOH HOH . H 5 HOH A 53 653 12 HOH HOH . H 5 HOH A 54 654 75 HOH HOH . H 5 HOH A 55 655 59 HOH HOH . H 5 HOH A 56 656 44 HOH HOH . H 5 HOH A 57 657 66 HOH HOH . H 5 HOH A 58 658 11 HOH HOH . H 5 HOH A 59 659 39 HOH HOH . H 5 HOH A 60 660 19 HOH HOH . H 5 HOH A 61 661 133 HOH HOH . H 5 HOH A 62 662 67 HOH HOH . H 5 HOH A 63 663 103 HOH HOH . H 5 HOH A 64 664 70 HOH HOH . H 5 HOH A 65 665 31 HOH HOH . H 5 HOH A 66 666 71 HOH HOH . H 5 HOH A 67 667 40 HOH HOH . H 5 HOH A 68 668 95 HOH HOH . H 5 HOH A 69 669 7 HOH HOH . H 5 HOH A 70 670 18 HOH HOH . H 5 HOH A 71 671 121 HOH HOH . H 5 HOH A 72 672 85 HOH HOH . H 5 HOH A 73 673 140 HOH HOH . H 5 HOH A 74 674 138 HOH HOH . H 5 HOH A 75 675 92 HOH HOH . H 5 HOH A 76 676 9 HOH HOH . H 5 HOH A 77 677 144 HOH HOH . H 5 HOH A 78 678 81 HOH HOH . H 5 HOH A 79 679 105 HOH HOH . H 5 HOH A 80 680 112 HOH HOH . H 5 HOH A 81 681 26 HOH HOH . H 5 HOH A 82 682 98 HOH HOH . H 5 HOH A 83 683 45 HOH HOH . H 5 HOH A 84 684 48 HOH HOH . H 5 HOH A 85 685 128 HOH HOH . H 5 HOH A 86 686 46 HOH HOH . H 5 HOH A 87 687 137 HOH HOH . H 5 HOH A 88 688 21 HOH HOH . H 5 HOH A 89 689 135 HOH HOH . H 5 HOH A 90 690 35 HOH HOH . H 5 HOH A 91 691 52 HOH HOH . H 5 HOH A 92 692 6 HOH HOH . H 5 HOH A 93 693 120 HOH HOH . H 5 HOH A 94 694 22 HOH HOH . H 5 HOH A 95 695 117 HOH HOH . H 5 HOH A 96 696 115 HOH HOH . H 5 HOH A 97 697 36 HOH HOH . H 5 HOH A 98 698 3 HOH HOH . H 5 HOH A 99 699 24 HOH HOH . H 5 HOH A 100 700 8 HOH HOH . H 5 HOH A 101 701 20 HOH HOH . H 5 HOH A 102 702 68 HOH HOH . H 5 HOH A 103 703 28 HOH HOH . H 5 HOH A 104 704 37 HOH HOH . H 5 HOH A 105 705 134 HOH HOH . H 5 HOH A 106 706 27 HOH HOH . H 5 HOH A 107 707 100 HOH HOH . H 5 HOH A 108 708 122 HOH HOH . H 5 HOH A 109 709 32 HOH HOH . H 5 HOH A 110 710 84 HOH HOH . H 5 HOH A 111 711 139 HOH HOH . H 5 HOH A 112 712 113 HOH HOH . H 5 HOH A 113 713 127 HOH HOH . H 5 HOH A 114 714 111 HOH HOH . H 5 HOH A 115 715 64 HOH HOH . H 5 HOH A 116 716 77 HOH HOH . H 5 HOH A 117 717 116 HOH HOH . H 5 HOH A 118 718 49 HOH HOH . H 5 HOH A 119 719 126 HOH HOH . H 5 HOH A 120 720 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 NQD . . . C 2 40.244 9.48 80.407 1 70.06 ? C12 NQD 502 A 1 HETATM 2 C C11 NQD . . . C 2 41.207 8.774 81.315 1 72.11 ? C11 NQD 502 A 1 HETATM 3 C C01 NQD . . . C 2 39.996 9.162 83.459 1 67.51 ? C01 NQD 502 A 1 HETATM 4 C C02 NQD . . . C 2 41.131 8.631 82.629 1 69.16 ? C02 NQD 502 A 1 HETATM 5 C C03 NQD . . . C 2 42.215 7.916 83.396 1 69.1 ? C03 NQD 502 A 1 HETATM 6 C C04 NQD . . . C 2 43.343 8.877 83.79 1 66.74 ? C04 NQD 502 A 1 HETATM 7 C C05 NQD . . . C 2 44.19 9.24 82.612 1 62.91 ? C05 NQD 502 A 1 HETATM 8 C C06 NQD . . . C 2 45.391 9.8 82.604 1 61.48 ? C06 NQD 502 A 1 HETATM 9 C C07 NQD . . . C 2 46.156 10.133 83.841 1 64.14 ? C07 NQD 502 A 1 HETATM 10 C C08 NQD . . . C 2 46.05 10.156 81.312 1 63.36 ? C08 NQD 502 A 1 HETATM 11 C C13 NQD . . . C 2 40.583 9.184 78.942 1 74.37 ? C13 NQD 502 A 1 HETATM 12 C C14 NQD . . . C 2 39.715 9.95 77.983 1 70.46 ? C14 NQD 502 A 1 HETATM 13 C C15 NQD . . . C 2 40.266 11.272 77.53 1 73.6 ? C15 NQD 502 A 1 HETATM 14 C C16 NQD . . . C 2 38.569 9.449 77.564 1 71.58 ? C16 NQD 502 A 1 HETATM 15 C C17 NQD . . . C 2 37.622 10.041 76.567 1 77.79 ? C17 NQD 502 A 1 HETATM 16 C C18 NQD . . . C 2 37.907 9.541 75.144 1 82.42 ? C18 NQD 502 A 1 HETATM 17 C C19 NQD . . . C 2 37.136 10.297 74.058 1 87.47 ? C19 NQD 502 A 1 HETATM 18 C C20 NQD . . . C 2 35.652 10.347 74.371 1 85.13 ? C20 NQD 502 A 1 HETATM 19 C C21 NQD . . . C 2 37.41 9.657 72.692 1 83.95 ? C21 NQD 502 A 1 HETATM 20 C C22 NQD . . . C 2 38.414 10.347 71.768 1 87.42 ? C22 NQD 502 A 1 HETATM 21 C C23 NQD . . . C 2 39.242 11.408 72.454 1 92.8 ? C23 NQD 502 A 1 HETATM 22 C C24 NQD . . . C 2 40.481 11.8 71.952 1 89.1 ? C24 NQD 502 A 1 HETATM 23 C C25 NQD . . . C 2 41.208 12.801 72.577 1 95.22 ? C25 NQD 502 A 1 HETATM 24 C C26 NQD . . . C 2 40.7 13.438 73.7 1 95.94 ? C26 NQD 502 A 1 HETATM 25 C C27 NQD . . . C 2 39.465 13.076 74.229 1 94.64 ? C27 NQD 502 A 1 HETATM 26 C C28 NQD . . . C 2 38.759 12.047 73.599 1 95.33 ? C28 NQD 502 A 1 HETATM 27 C C30 NQD . . . C 2 38.907 13.809 75.423 1 92.37 ? C30 NQD 502 A 1 HETATM 28 O O09 NQD . . . C 2 45.41 10.288 80.272 1 54.96 ? O09 NQD 502 A 1 HETATM 29 O O10 NQD . . . C 2 47.373 10.329 81.377 1 65.29 ? O10 NQD 502 A 1 HETATM 30 O O29 NQD . . . C 2 37.576 11.689 74.191 1 86.92 ? O29 NQD 502 A 1 HETATM 31 O O31 NQD . . . C 2 42.441 13.152 72.11 1 97.82 ? O31 NQD 502 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #