data_7AWM # _model_server_result.job_id QZjJXuOkUPD08gn2O7LVUQ _model_server_result.datetime_utc '2024-11-30 18:36:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7awm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 7AWM # _exptl.entry_id 7AWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.475 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AWM _cell.length_a 122.882 _cell.length_b 122.882 _cell.length_c 90.032 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -61.441 106.418934 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -122.882 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 127 A TYR 127 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OG1 THR 130 A THR 130 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A OG1 THR 131 A THR 131 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc4 A OG SER 345 A SER 345 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? metalc ? metalc5 A O GLY 374 A GLY 374 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc6 A O ALA 375 A ALA 375 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc7 A O THR 376 A THR 376 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc8 A O ASN 378 A ASN 378 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc9 A OD1 ASN 378 A ASN 378 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 A OD1 ASP 380 A ASP 380 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc11 A O SER 417 A SER 417 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc12 A O ILE 418 A ILE 418 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc13 A O ALA 420 A ALA 420 1_555 D NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc14 A OD2 ASP 467 A ASP 467 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? # _chem_comp.formula 'C27 H22 N2 O3' _chem_comp.formula_weight 422.475 _chem_comp.id 6Z6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 6Z6 sing 1 n n O C1 6Z6 sing 2 n n C1 C2 6Z6 doub 3 n y C1 C6 6Z6 sing 4 n y C2 C3 6Z6 sing 5 n y C6 C5 6Z6 doub 6 n y C3 C4 6Z6 doub 7 n y C5 C4 6Z6 sing 8 n y C4 C7 6Z6 sing 9 n n N1 C16 6Z6 trip 10 n n C16 C15 6Z6 sing 11 n n C7 C15 6Z6 sing 12 n n C7 C8 6Z6 sing 13 n n O1 C9 6Z6 doub 14 n n C15 C14 6Z6 doub 15 n n C8 C9 6Z6 sing 16 n n C8 C13 6Z6 doub 17 n n C9 C10 6Z6 sing 18 n n C14 N 6Z6 sing 19 n n C14 O2 6Z6 sing 20 n n C24 C25 6Z6 doub 21 n y C24 C23 6Z6 sing 22 n y C13 O2 6Z6 sing 23 n n C13 C12 6Z6 sing 24 n n C10 C11 6Z6 sing 25 n n C25 C26 6Z6 sing 26 n y C23 C22 6Z6 doub 27 n y C12 C11 6Z6 sing 28 n n C11 C17 6Z6 sing 29 n n C26 C17 6Z6 doub 30 n y C26 C21 6Z6 sing 31 n y C17 C18 6Z6 sing 32 n y C22 C21 6Z6 sing 33 n y C21 C20 6Z6 doub 34 n y C18 C19 6Z6 doub 35 n y C20 C19 6Z6 sing 36 n y C2 H1 6Z6 sing 37 n n C5 H2 6Z6 sing 38 n n C6 H3 6Z6 sing 39 n n N H4 6Z6 sing 40 n n N H5 6Z6 sing 41 n n C3 H6 6Z6 sing 42 n n C H7 6Z6 sing 43 n n C H8 6Z6 sing 44 n n C H9 6Z6 sing 45 n n C10 H10 6Z6 sing 46 n n C10 H11 6Z6 sing 47 n n C11 H12 6Z6 sing 48 n n C12 H13 6Z6 sing 49 n n C12 H14 6Z6 sing 50 n n C18 H15 6Z6 sing 51 n n C19 H16 6Z6 sing 52 n n C20 H17 6Z6 sing 53 n n C22 H18 6Z6 sing 54 n n C23 H19 6Z6 sing 55 n n C24 H20 6Z6 sing 56 n n C25 H21 6Z6 sing 57 n n C7 H22 6Z6 sing 58 n n # _atom_sites.entry_id 7AWM _atom_sites.fract_transf_matrix[1][1] 0.008138 _atom_sites.fract_transf_matrix[1][2] 0.004698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 499 NA NA . C 2 NA A 1 602 500 NA NA . D 2 NA A 1 603 501 NA NA . E 3 ASP A 1 604 502 ASP ASP . F 4 6Z6 A 1 605 503 6Z6 UCP . G 5 BA A 1 606 504 BA BA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6Z6 . . . F 4 -40.917 21.448 -3.982 1 108.68 ? N1 6Z6 605 A 1 HETATM 2 C C2 6Z6 . . . F 4 -43.043 18.32 -0.182 1 114.75 ? C2 6Z6 605 A 1 HETATM 3 O O2 6Z6 . . . F 4 -45.027 19.885 -5.825 1 106.67 ? O2 6Z6 605 A 1 HETATM 4 C C4 6Z6 . . . F 4 -43.516 18.666 -2.566 1 111.71 ? C4 6Z6 605 A 1 HETATM 5 C C5 6Z6 . . . F 4 -44.744 19.264 -2.197 1 110.81 ? C5 6Z6 605 A 1 HETATM 6 C C6 6Z6 . . . F 4 -45.13 19.427 -0.857 1 111.12 ? C6 6Z6 605 A 1 HETATM 7 O O1 6Z6 . . . F 4 -43.173 15.717 -4.419 1 115.28 ? O1 6Z6 605 A 1 HETATM 8 C C9 6Z6 . . . F 4 -44.095 16.374 -4.901 1 112.77 ? C9 6Z6 605 A 1 HETATM 9 C C8 6Z6 . . . F 4 -44.126 17.864 -4.837 1 110.35 ? C8 6Z6 605 A 1 HETATM 10 C C13 6Z6 . . . F 4 -45.022 18.533 -5.608 1 107.94 ? C13 6Z6 605 A 1 HETATM 11 C C14 6Z6 . . . F 4 -44.038 20.633 -5.253 1 106.9 ? C14 6Z6 605 A 1 HETATM 12 N N 6Z6 . . . F 4 -44.153 21.923 -5.715 1 105.35 ? N 6Z6 605 A 1 HETATM 13 C C15 6Z6 . . . F 4 -43.023 20.072 -4.498 1 108.64 ? C15 6Z6 605 A 1 HETATM 14 C C16 6Z6 . . . F 4 -41.863 20.817 -4.205 1 108.54 ? C16 6Z6 605 A 1 HETATM 15 C C7 6Z6 . . . F 4 -43.08 18.623 -4.028 1 111.03 ? C7 6Z6 605 A 1 HETATM 16 C C3 6Z6 . . . F 4 -42.68 18.18 -1.548 1 114.05 ? C3 6Z6 605 A 1 HETATM 17 C C1 6Z6 . . . F 4 -44.266 18.973 0.16 1 113.34 ? C1 6Z6 605 A 1 HETATM 18 O O 6Z6 . . . F 4 -44.478 19.228 1.518 1 113.2 ? O 6Z6 605 A 1 HETATM 19 C C 6Z6 . . . F 4 -45.683 18.765 2.119 1 113.01 ? C 6Z6 605 A 1 HETATM 20 C C10 6Z6 . . . F 4 -45.23 15.668 -5.689 1 112.5 ? C10 6Z6 605 A 1 HETATM 21 C C11 6Z6 . . . F 4 -45.844 16.497 -6.831 1 109.98 ? C11 6Z6 605 A 1 HETATM 22 C C12 6Z6 . . . F 4 -46.128 17.951 -6.402 1 107.13 ? C12 6Z6 605 A 1 HETATM 23 C C17 6Z6 . . . F 4 -47.105 15.899 -7.5 1 109.5 ? C17 6Z6 605 A 1 HETATM 24 C C18 6Z6 . . . F 4 -46.933 15.284 -8.742 1 111.44 ? C18 6Z6 605 A 1 HETATM 25 C C19 6Z6 . . . F 4 -48.028 14.763 -9.502 1 111.69 ? C19 6Z6 605 A 1 HETATM 26 C C20 6Z6 . . . F 4 -49.312 14.871 -9.035 1 109.95 ? C20 6Z6 605 A 1 HETATM 27 C C21 6Z6 . . . F 4 -49.582 15.504 -7.789 1 107.25 ? C21 6Z6 605 A 1 HETATM 28 C C26 6Z6 . . . F 4 -48.497 16.011 -6.975 1 106.92 ? C26 6Z6 605 A 1 HETATM 29 C C22 6Z6 . . . F 4 -50.956 15.675 -7.401 1 106.28 ? C22 6Z6 605 A 1 HETATM 30 C C23 6Z6 . . . F 4 -51.261 16.329 -6.227 1 105.7 ? C23 6Z6 605 A 1 HETATM 31 C C24 6Z6 . . . F 4 -50.206 16.82 -5.378 1 105.27 ? C24 6Z6 605 A 1 HETATM 32 C C25 6Z6 . . . F 4 -48.879 16.656 -5.736 1 105.64 ? C25 6Z6 605 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #