data_7AX2
#
_model_server_result.job_id            Q3fa8M2IBe_Jo_vVbgAZyQ 
_model_server_result.datetime_utc      '2025-09-01 03:48:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ax2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7AX2 
#
_exptl.entry_id    7AX2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AX2 
_cell.length_a            133.517 
_cell.length_b            133.517 
_cell.length_c            70.093 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ARG 247 A ARG 247 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc2 C O18 S5T . A S5T 402 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc3 C O2E S5T . A S5T 402 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 C O3E S5T . A S5T 402 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc5 C O16E S5T . A S5T 402 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7AX2 
_atom_sites.fract_transf_matrix[1][1]    0.00749 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SIW A 1 401 1 SIW SIW . 
C 3 S5T A 1 402 2 S5T LKE . 
D 4 NA A 1 403 1 NA NA . 
E 5 HOH A 1 501 48 HOH HOH . 
E 5 HOH A 2 502 33 HOH HOH . 
E 5 HOH A 3 503 16 HOH HOH . 
E 5 HOH A 4 504 28 HOH HOH . 
E 5 HOH A 5 505 61 HOH HOH . 
E 5 HOH A 6 506 70 HOH HOH . 
E 5 HOH A 7 507 10 HOH HOH . 
E 5 HOH A 8 508 35 HOH HOH . 
E 5 HOH A 9 509 13 HOH HOH . 
E 5 HOH A 10 510 12 HOH HOH . 
E 5 HOH A 11 511 58 HOH HOH . 
E 5 HOH A 12 512 45 HOH HOH . 
E 5 HOH A 13 513 91 HOH HOH . 
E 5 HOH A 14 514 6 HOH HOH . 
E 5 HOH A 15 515 69 HOH HOH . 
E 5 HOH A 16 516 34 HOH HOH . 
E 5 HOH A 17 517 1 HOH HOH . 
E 5 HOH A 18 518 47 HOH HOH . 
E 5 HOH A 19 519 11 HOH HOH . 
E 5 HOH A 20 520 14 HOH HOH . 
E 5 HOH A 21 521 20 HOH HOH . 
E 5 HOH A 22 522 68 HOH HOH . 
E 5 HOH A 23 523 60 HOH HOH . 
E 5 HOH A 24 524 19 HOH HOH . 
E 5 HOH A 25 525 81 HOH HOH . 
E 5 HOH A 26 526 17 HOH HOH . 
E 5 HOH A 27 527 3 HOH HOH . 
E 5 HOH A 28 528 7 HOH HOH . 
E 5 HOH A 29 529 80 HOH HOH . 
E 5 HOH A 30 530 30 HOH HOH . 
E 5 HOH A 31 531 39 HOH HOH . 
E 5 HOH A 32 532 40 HOH HOH . 
E 5 HOH A 33 533 62 HOH HOH . 
E 5 HOH A 34 534 63 HOH HOH . 
E 5 HOH A 35 535 15 HOH HOH . 
E 5 HOH A 36 536 9 HOH HOH . 
E 5 HOH A 37 537 93 HOH HOH . 
E 5 HOH A 38 538 29 HOH HOH . 
E 5 HOH A 39 539 18 HOH HOH . 
E 5 HOH A 40 540 57 HOH HOH . 
E 5 HOH A 41 541 49 HOH HOH . 
E 5 HOH A 42 542 46 HOH HOH . 
E 5 HOH A 43 543 4 HOH HOH . 
E 5 HOH A 44 544 59 HOH HOH . 
E 5 HOH A 45 545 31 HOH HOH . 
E 5 HOH A 46 546 32 HOH HOH . 
E 5 HOH A 47 547 2 HOH HOH . 
E 5 HOH A 48 548 86 HOH HOH . 
E 5 HOH A 49 549 55 HOH HOH . 
E 5 HOH A 50 550 73 HOH HOH . 
E 5 HOH A 51 551 23 HOH HOH . 
E 5 HOH A 52 552 51 HOH HOH . 
E 5 HOH A 53 553 66 HOH HOH . 
E 5 HOH A 54 554 37 HOH HOH . 
E 5 HOH A 55 555 25 HOH HOH . 
E 5 HOH A 56 556 22 HOH HOH . 
E 5 HOH A 57 557 21 HOH HOH . 
E 5 HOH A 58 558 98 HOH HOH . 
E 5 HOH A 59 559 42 HOH HOH . 
E 5 HOH A 60 560 71 HOH HOH . 
E 5 HOH A 61 561 106 HOH HOH . 
E 5 HOH A 62 562 50 HOH HOH . 
E 5 HOH A 63 563 89 HOH HOH . 
E 5 HOH A 64 564 94 HOH HOH . 
E 5 HOH A 65 565 104 HOH HOH . 
E 5 HOH A 66 566 101 HOH HOH . 
E 5 HOH A 67 567 5 HOH HOH . 
E 5 HOH A 68 568 100 HOH HOH . 
E 5 HOH A 69 569 54 HOH HOH . 
E 5 HOH A 70 570 26 HOH HOH . 
E 5 HOH A 71 571 38 HOH HOH . 
E 5 HOH A 72 572 84 HOH HOH . 
E 5 HOH A 73 573 27 HOH HOH . 
E 5 HOH A 74 574 72 HOH HOH . 
E 5 HOH A 75 575 36 HOH HOH . 
E 5 HOH A 76 576 8 HOH HOH . 
E 5 HOH A 77 577 92 HOH HOH . 
E 5 HOH A 78 578 52 HOH HOH . 
E 5 HOH A 79 579 85 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -8.446 
_atom_site.Cartn_y               -6.561 
_atom_site.Cartn_z               -26.177 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        21.12 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           654 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#