data_7AX6 # _model_server_result.job_id 4SYC9XZTSQjranG4SQtOTA _model_server_result.datetime_utc '2024-11-21 08:32:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ax6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7AX6 # _exptl.entry_id 7AX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.94 _cell.angle_gamma 90 _cell.entry_id 7AX6 _cell.length_a 112.915 _cell.length_b 52.973 _cell.length_c 44.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 156 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 156 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id S8H _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id S8H _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.199 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H23 N3 O6 S' _chem_comp.formula_weight 349.403 _chem_comp.id S8H _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-5-oxidanylidene-5-[[(2~{S})-1-oxidanylidene-1-[(2-oxidanylidene-2-propan-2-yloxy-ethyl)amino]-3-sulfanyl-propan-2-yl]amino]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C13 S8H doub 296 n n C13 O5 S8H sing 297 n n C13 C12 S8H sing 298 n n C12 C11 S8H sing 299 n n C12 N3 S8H sing 300 n n C11 C10 S8H sing 301 n n O4 C9 S8H doub 302 n n C10 C9 S8H sing 303 n n C9 N2 S8H sing 304 n n O3 C6 S8H doub 305 n n C8 C7 S8H sing 306 n n C8 S1 S8H sing 307 n n C7 N2 S8H sing 308 n n C7 C6 S8H sing 309 n n C6 N1 S8H sing 310 n n N1 C5 S8H sing 311 n n C5 C4 S8H sing 312 n n C4 O1 S8H sing 313 n n C4 O2 S8H doub 314 n n O1 C2 S8H sing 315 n n C2 C3 S8H sing 316 n n C2 C1 S8H sing 317 n n N1 H10 S8H sing 318 n n N3 H21 S8H sing 319 n n N3 H22 S8H sing 320 n n C5 H9 S8H sing 321 n n C5 H8 S8H sing 322 n n C7 H11 S8H sing 323 n n C8 H12 S8H sing 324 n n C8 H13 S8H sing 325 n n C10 H17 S8H sing 326 n n C10 H16 S8H sing 327 n n C1 H2 S8H sing 328 n n C1 H3 S8H sing 329 n n C1 H1 S8H sing 330 n n C11 H18 S8H sing 331 n n C11 H19 S8H sing 332 n n C12 H20 S8H sing 333 n n C2 H4 S8H sing 334 n n C3 H6 S8H sing 335 n n C3 H7 S8H sing 336 n n C3 H5 S8H sing 337 n n N2 H15 S8H sing 338 n n O5 H14 S8H sing 339 n n S1 H24 S8H sing 340 n n # _atom_sites.entry_id 7AX6 _atom_sites.fract_transf_matrix[1][1] 0.008856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002036 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S8H A 1 401 401 S8H LIG . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 701 DMS DMS . E 4 IMD A 1 404 801 IMD IMD . F 5 HOH A 1 501 19 HOH HOH . F 5 HOH A 2 502 59 HOH HOH . F 5 HOH A 3 503 103 HOH HOH . F 5 HOH A 4 504 90 HOH HOH . F 5 HOH A 5 505 92 HOH HOH . F 5 HOH A 6 506 32 HOH HOH . F 5 HOH A 7 507 86 HOH HOH . F 5 HOH A 8 508 63 HOH HOH . F 5 HOH A 9 509 29 HOH HOH . F 5 HOH A 10 510 89 HOH HOH . F 5 HOH A 11 511 7 HOH HOH . F 5 HOH A 12 512 26 HOH HOH . F 5 HOH A 13 513 48 HOH HOH . F 5 HOH A 14 514 13 HOH HOH . F 5 HOH A 15 515 85 HOH HOH . F 5 HOH A 16 516 38 HOH HOH . F 5 HOH A 17 517 54 HOH HOH . F 5 HOH A 18 518 87 HOH HOH . F 5 HOH A 19 519 10 HOH HOH . F 5 HOH A 20 520 105 HOH HOH . F 5 HOH A 21 521 16 HOH HOH . F 5 HOH A 22 522 4 HOH HOH . F 5 HOH A 23 523 82 HOH HOH . F 5 HOH A 24 524 77 HOH HOH . F 5 HOH A 25 525 23 HOH HOH . F 5 HOH A 26 526 50 HOH HOH . F 5 HOH A 27 527 79 HOH HOH . F 5 HOH A 28 528 15 HOH HOH . F 5 HOH A 29 529 93 HOH HOH . F 5 HOH A 30 530 61 HOH HOH . F 5 HOH A 31 531 37 HOH HOH . F 5 HOH A 32 532 11 HOH HOH . F 5 HOH A 33 533 35 HOH HOH . F 5 HOH A 34 534 49 HOH HOH . F 5 HOH A 35 535 6 HOH HOH . F 5 HOH A 36 536 12 HOH HOH . F 5 HOH A 37 537 9 HOH HOH . F 5 HOH A 38 538 58 HOH HOH . F 5 HOH A 39 539 41 HOH HOH . F 5 HOH A 40 540 2 HOH HOH . F 5 HOH A 41 541 74 HOH HOH . F 5 HOH A 42 542 46 HOH HOH . F 5 HOH A 43 543 1 HOH HOH . F 5 HOH A 44 544 33 HOH HOH . F 5 HOH A 45 545 55 HOH HOH . F 5 HOH A 46 546 68 HOH HOH . F 5 HOH A 47 547 71 HOH HOH . F 5 HOH A 48 548 43 HOH HOH . F 5 HOH A 49 549 3 HOH HOH . F 5 HOH A 50 550 57 HOH HOH . F 5 HOH A 51 551 83 HOH HOH . F 5 HOH A 52 552 75 HOH HOH . F 5 HOH A 53 553 18 HOH HOH . F 5 HOH A 54 554 44 HOH HOH . F 5 HOH A 55 555 28 HOH HOH . F 5 HOH A 56 556 64 HOH HOH . F 5 HOH A 57 557 27 HOH HOH . F 5 HOH A 58 558 17 HOH HOH . F 5 HOH A 59 559 34 HOH HOH . F 5 HOH A 60 560 81 HOH HOH . F 5 HOH A 61 561 21 HOH HOH . F 5 HOH A 62 562 30 HOH HOH . F 5 HOH A 63 563 52 HOH HOH . F 5 HOH A 64 564 97 HOH HOH . F 5 HOH A 65 565 14 HOH HOH . F 5 HOH A 66 566 53 HOH HOH . F 5 HOH A 67 567 51 HOH HOH . F 5 HOH A 68 568 36 HOH HOH . F 5 HOH A 69 569 104 HOH HOH . F 5 HOH A 70 570 56 HOH HOH . F 5 HOH A 71 571 8 HOH HOH . F 5 HOH A 72 572 66 HOH HOH . F 5 HOH A 73 573 25 HOH HOH . F 5 HOH A 74 574 24 HOH HOH . F 5 HOH A 75 575 5 HOH HOH . F 5 HOH A 76 576 72 HOH HOH . F 5 HOH A 77 577 47 HOH HOH . F 5 HOH A 78 578 62 HOH HOH . F 5 HOH A 79 579 94 HOH HOH . F 5 HOH A 80 580 70 HOH HOH . F 5 HOH A 81 581 67 HOH HOH . F 5 HOH A 82 582 76 HOH HOH . F 5 HOH A 83 583 78 HOH HOH . F 5 HOH A 84 584 39 HOH HOH . F 5 HOH A 85 585 73 HOH HOH . F 5 HOH A 86 586 99 HOH HOH . F 5 HOH A 87 587 95 HOH HOH . F 5 HOH A 88 588 88 HOH HOH . F 5 HOH A 89 589 101 HOH HOH . F 5 HOH A 90 590 65 HOH HOH . F 5 HOH A 91 591 84 HOH HOH . F 5 HOH A 92 592 20 HOH HOH . F 5 HOH A 93 593 96 HOH HOH . F 5 HOH A 94 594 45 HOH HOH . F 5 HOH A 95 595 98 HOH HOH . F 5 HOH A 96 596 40 HOH HOH . F 5 HOH A 97 597 102 HOH HOH . F 5 HOH A 98 598 80 HOH HOH . F 5 HOH A 99 599 106 HOH HOH . F 5 HOH A 100 600 31 HOH HOH . F 5 HOH A 101 601 69 HOH HOH . F 5 HOH A 102 602 60 HOH HOH . F 5 HOH A 103 603 42 HOH HOH . F 5 HOH A 104 604 100 HOH HOH . F 5 HOH A 105 605 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S8H . . . B 2 18.214 -17.436 -3.178 0.7 84.09 ? N1 S8H 401 A 1 HETATM 2 N N3 S8H . . . B 2 18.154 -11.23 -6.648 0.7 93.23 ? N3 S8H 401 A 1 HETATM 3 C C4 S8H . . . B 2 17.849 -18.577 -1.036 0.7 98.07 ? C4 S8H 401 A 1 HETATM 4 C C5 S8H . . . B 2 17.997 -18.71 -2.527 0.7 100.06 ? C5 S8H 401 A 1 HETATM 5 C C6 S8H . . . B 2 18.483 -17.362 -4.482 0.7 82.91 ? C6 S8H 401 A 1 HETATM 6 C C7 S8H . . . B 2 18.44 -15.99 -5.144 0.7 79.55 ? C7 S8H 401 A 1 HETATM 7 C C8 S8H . . . B 2 17.01 -15.472 -5.173 0.7 74.77 ? C8 S8H 401 A 1 HETATM 8 C C10 S8H . . . B 2 20.243 -12.904 -5.332 0.7 99.12 ? C10 S8H 401 A 1 HETATM 9 C C13 S8H . . . B 2 18.523 -13.269 -8.014 0.7 91.92 ? C13 S8H 401 A 1 HETATM 10 C C1 S8H . . . B 2 19.064 -19.34 1.543 0.7 112.07 ? C1 S8H 401 A 1 HETATM 11 C C11 S8H . . . B 2 20.433 -12.251 -6.699 0.7 112.19 ? C11 S8H 401 A 1 HETATM 12 C C12 S8H . . . B 2 19.144 -11.968 -7.483 0.7 106.61 ? C12 S8H 401 A 1 HETATM 13 C C2 S8H . . . B 2 19.039 -17.943 0.963 0.7 102.97 ? C2 S8H 401 A 1 HETATM 14 C C3 S8H . . . B 2 20.275 -17.127 1.275 0.7 85.53 ? C3 S8H 401 A 1 HETATM 15 C C9 S8H . . . B 2 20.311 -14.417 -5.266 0.7 86.38 ? C9 S8H 401 A 1 HETATM 16 N N2 S8H . . . B 2 19.332 -15.002 -4.571 0.7 83.48 ? N2 S8H 401 A 1 HETATM 17 O O1 S8H . . . B 2 18.968 -18.074 -0.493 0.7 109.19 ? O1 S8H 401 A 1 HETATM 18 O O2 S8H . . . B 2 16.879 -18.891 -0.406 0.7 74.37 ? O2 S8H 401 A 1 HETATM 19 O O3 S8H . . . B 2 18.718 -18.341 -5.188 0.7 78.73 ? O3 S8H 401 A 1 HETATM 20 O O4 S8H . . . B 2 21.203 -15.063 -5.815 0.7 77.82 ? O4 S8H 401 A 1 HETATM 21 O O5 S8H . . . B 2 17.335 -13.5 -7.721 0.7 64.9 ? O5 S8H 401 A 1 HETATM 22 O O6 S8H . . . B 2 19.257 -14.008 -8.705 0.7 103.57 -1 O6 S8H 401 A 1 HETATM 23 S S1 S8H . . . B 2 16.443 -14.578 -3.695 0.7 44.54 ? S1 S8H 401 A 1 HETATM 24 H H10 S8H . . . B 2 18.167 -16.7 -2.71 0.7 100.81 ? H10 S8H 401 A 1 HETATM 25 H H21 S8H . . . B 2 17.426 -11.009 -7.149 0.7 111.77 ? H21 S8H 401 A 1 HETATM 26 H H22 S8H . . . B 2 18.529 -10.467 -6.32 0.7 111.77 ? H22 S8H 401 A 1 HETATM 27 H H9 S8H . . . B 2 18.752 -19.299 -2.723 0.7 119.97 ? H9 S8H 401 A 1 HETATM 28 H H8 S8H . . . B 2 17.19 -19.12 -2.894 0.7 119.97 ? H8 S8H 401 A 1 HETATM 29 H H11 S8H . . . B 2 18.731 -16.135 -6.072 0.7 95.35 ? H11 S8H 401 A 1 HETATM 30 H H12 S8H . . . B 2 16.416 -16.237 -5.314 0.7 89.62 ? H12 S8H 401 A 1 HETATM 31 H H13 S8H . . . B 2 16.922 -14.875 -5.944 0.7 89.62 ? H13 S8H 401 A 1 HETATM 32 H H17 S8H . . . B 2 19.368 -12.63 -4.984 0.7 118.84 ? H17 S8H 401 A 1 HETATM 33 H H16 S8H . . . B 2 20.931 -12.549 -4.728 0.7 118.84 ? H16 S8H 401 A 1 HETATM 34 H H2 S8H . . . B 2 18.205 -19.773 1.386 0.7 134.38 ? H2 S8H 401 A 1 HETATM 35 H H3 S8H . . . B 2 19.232 -19.292 2.501 0.7 134.38 ? H3 S8H 401 A 1 HETATM 36 H H1 S8H . . . B 2 19.77 -19.857 1.115 0.7 134.38 ? H1 S8H 401 A 1 HETATM 37 H H18 S8H . . . B 2 20.906 -11.401 -6.577 0.7 134.52 ? H18 S8H 401 A 1 HETATM 38 H H19 S8H . . . B 2 21 -12.833 -7.248 0.7 134.52 ? H19 S8H 401 A 1 HETATM 39 H H20 S8H . . . B 2 19.363 -11.392 -8.251 0.7 127.82 ? H20 S8H 401 A 1 HETATM 40 H H4 S8H . . . B 2 18.235 -17.466 1.292 0.7 123.45 ? H4 S8H 401 A 1 HETATM 41 H H6 S8H . . . B 2 21.059 -17.569 0.903 0.7 102.53 ? H6 S8H 401 A 1 HETATM 42 H H7 S8H . . . B 2 20.377 -17.047 2.241 0.7 102.53 ? H7 S8H 401 A 1 HETATM 43 H H5 S8H . . . B 2 20.187 -16.24 0.884 0.7 102.53 ? H5 S8H 401 A 1 HETATM 44 H H15 S8H . . . B 2 19.216 -14.786 -3.733 0.7 100.07 ? H15 S8H 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #