data_7AXB # _model_server_result.job_id S8F3EWsxYSDayEGZuLiIBA _model_server_result.datetime_utc '2024-11-28 12:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7axb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7AXB # _exptl.entry_id 7AXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AXB _cell.length_a 91.952 _cell.length_b 91.952 _cell.length_c 85.844 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 91.952 91.952 -42.922 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 250 n n C1 H11 MPD sing 251 n n C1 H12 MPD sing 252 n n C1 H13 MPD sing 253 n n C2 O2 MPD sing 254 n n C2 CM MPD sing 255 n n C2 C3 MPD sing 256 n n O2 HO2 MPD sing 257 n n CM HM1 MPD sing 258 n n CM HM2 MPD sing 259 n n CM HM3 MPD sing 260 n n C3 C4 MPD sing 261 n n C3 H31 MPD sing 262 n n C3 H32 MPD sing 263 n n C4 O4 MPD sing 264 n n C4 C5 MPD sing 265 n n C4 H4 MPD sing 266 n n O4 HO4 MPD sing 267 n n C5 H51 MPD sing 268 n n C5 H52 MPD sing 269 n n C5 H53 MPD sing 270 n n # _atom_sites.entry_id 7AXB _atom_sites.fract_transf_matrix[1][1] 0.010875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 501 1 MPD MPD . C 3 S68 A 1 502 1 S68 DRG . D 4 GOL A 1 503 1 GOL GOL . E 4 GOL A 1 504 1 GOL GOL . F 5 HOH A 1 601 107 HOH HOH . F 5 HOH A 2 602 36 HOH HOH . F 5 HOH A 3 603 23 HOH HOH . F 5 HOH A 4 604 32 HOH HOH . F 5 HOH A 5 605 90 HOH HOH . F 5 HOH A 6 606 84 HOH HOH . F 5 HOH A 7 607 3 HOH HOH . F 5 HOH A 8 608 91 HOH HOH . F 5 HOH A 9 609 7 HOH HOH . F 5 HOH A 10 610 83 HOH HOH . F 5 HOH A 11 611 30 HOH HOH . F 5 HOH A 12 612 12 HOH HOH . F 5 HOH A 13 613 37 HOH HOH . F 5 HOH A 14 614 94 HOH HOH . F 5 HOH A 15 615 1 HOH HOH . F 5 HOH A 16 616 4 HOH HOH . F 5 HOH A 17 617 6 HOH HOH . F 5 HOH A 18 618 26 HOH HOH . F 5 HOH A 19 619 89 HOH HOH . F 5 HOH A 20 620 29 HOH HOH . F 5 HOH A 21 621 81 HOH HOH . F 5 HOH A 22 622 86 HOH HOH . F 5 HOH A 23 623 15 HOH HOH . F 5 HOH A 24 624 5 HOH HOH . F 5 HOH A 25 625 11 HOH HOH . F 5 HOH A 26 626 92 HOH HOH . F 5 HOH A 27 627 25 HOH HOH . F 5 HOH A 28 628 76 HOH HOH . F 5 HOH A 29 629 19 HOH HOH . F 5 HOH A 30 630 95 HOH HOH . F 5 HOH A 31 631 14 HOH HOH . F 5 HOH A 32 632 54 HOH HOH . F 5 HOH A 33 633 9 HOH HOH . F 5 HOH A 34 634 24 HOH HOH . F 5 HOH A 35 635 105 HOH HOH . F 5 HOH A 36 636 27 HOH HOH . F 5 HOH A 37 637 35 HOH HOH . F 5 HOH A 38 638 93 HOH HOH . F 5 HOH A 39 639 33 HOH HOH . F 5 HOH A 40 640 88 HOH HOH . F 5 HOH A 41 641 100 HOH HOH . F 5 HOH A 42 642 28 HOH HOH . F 5 HOH A 43 643 42 HOH HOH . F 5 HOH A 44 644 75 HOH HOH . F 5 HOH A 45 645 106 HOH HOH . F 5 HOH A 46 646 13 HOH HOH . F 5 HOH A 47 647 101 HOH HOH . F 5 HOH A 48 648 111 HOH HOH . F 5 HOH A 49 649 109 HOH HOH . F 5 HOH A 50 650 110 HOH HOH . F 5 HOH A 51 651 108 HOH HOH . F 5 HOH A 52 652 97 HOH HOH . F 5 HOH A 53 653 99 HOH HOH . F 5 HOH A 54 654 103 HOH HOH . F 5 HOH A 55 655 78 HOH HOH . F 5 HOH A 56 656 77 HOH HOH . F 5 HOH A 57 657 79 HOH HOH . F 5 HOH A 58 658 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 6.076 56.871 -3.331 1 45.49 ? C1 MPD 501 A 1 HETATM 2 C C2 MPD . . . B 2 4.581 56.647 -3.511 1 56.76 ? C2 MPD 501 A 1 HETATM 3 O O2 MPD . . . B 2 3.932 57.312 -2.399 1 48.58 ? O2 MPD 501 A 1 HETATM 4 C CM MPD . . . B 2 4.123 57.293 -4.828 1 45.66 ? CM MPD 501 A 1 HETATM 5 C C3 MPD . . . B 2 4.215 55.156 -3.447 1 56.92 ? C3 MPD 501 A 1 HETATM 6 C C4 MPD . . . B 2 4.704 54.339 -4.653 1 67.4 ? C4 MPD 501 A 1 HETATM 7 O O4 MPD . . . B 2 6.082 54.04 -4.536 1 74.9 ? O4 MPD 501 A 1 HETATM 8 C C5 MPD . . . B 2 3.962 53.009 -4.795 1 59.85 ? C5 MPD 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #