data_7AXD
#
_model_server_result.job_id            Jr_4fjfkaQ2-dMDvtDbT2Q 
_model_server_result.datetime_utc      '2024-11-22 16:02:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7axd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7AXD 
#
_exptl.entry_id    7AXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              437.148 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            fipronil 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7AXD 
_cell.length_a            92.012 
_cell.length_b            92.012 
_cell.length_c            86.555 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H4 Cl2 F6 N4 O S' 
_chem_comp.formula_weight    437.148 
_chem_comp.id                S6W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              fipronil 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5-amino-1-[2,6-dichloro-4-(trifluoromethyl)phenyl]-4-(trifluoromethylsulfinyl)pyrazole-3-carbonitrile;5-amino-1-[2,6-dichloro-4-(trifluoromethyl)phenyl]-4-[(trifluoromethyl)sulfinyl]-1H-pyrazole-3-carbonitrile;5-amino-1-(2,6-dichloro-4-trifluoromethylphenyl)-3-cyano-4-trifluoromethylsulphinyl pyrazole;5-azanyl-1-[2,6-bis(chloranyl)-4-(trifluoromethyl)phenyl]-4-[(~{R})-trifluoromethylsulfinyl]pyrazole-3-carbonitrile' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F5 C11 S6W sing 288 n n 
F3 C11 S6W sing 289 n n 
F4 C11 S6W sing 290 n n 
C11 C1 S6W sing 291 n n 
C C1 S6W doub 292 n y 
C C5 S6W sing 293 n y 
C1 C2 S6W sing 294 n y 
CL C5 S6W sing 295 n n 
C5 C4 S6W doub 296 n y 
C2 C3 S6W doub 297 n y 
C4 C3 S6W sing 298 n y 
C4 N S6W sing 299 n n 
C3 CL1 S6W sing 300 n n 
N N1 S6W sing 301 n y 
N C6 S6W sing 302 n y 
N3 C6 S6W sing 303 n n 
N1 C8 S6W doub 304 n y 
C6 C7 S6W doub 305 n y 
C8 C7 S6W sing 306 n y 
C8 C9 S6W sing 307 n n 
C7 S S6W sing 308 n n 
F1 C10 S6W sing 309 n n 
F C10 S6W sing 310 n n 
C9 N2 S6W trip 311 n n 
C10 S S6W sing 312 n n 
C10 F2 S6W sing 313 n n 
O S S6W doub 314 n n 
C H1 S6W sing 315 n n 
C2 H3 S6W sing 316 n n 
N3 H6 S6W sing 317 n n 
N3 H7 S6W sing 318 n n 
#
_atom_sites.entry_id                     7AXD 
_atom_sites.fract_transf_matrix[1][1]    0.010868 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011553 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 S6W A 1 501 1 S6W FYP . 
C 3 IPA A 1 502 1 IPA IPA . 
D 3 IPA A 1 503 2 IPA IPA . 
E 3 IPA A 1 504 3 IPA IPA . 
F 3 IPA A 1 505 4 IPA IPA . 
G 3 IPA A 1 506 5 IPA IPA . 
H 4 HOH A 1 601 69 HOH HOH . 
H 4 HOH A 2 602 60 HOH HOH . 
H 4 HOH A 3 603 62 HOH HOH . 
H 4 HOH A 4 604 53 HOH HOH . 
H 4 HOH A 5 605 28 HOH HOH . 
H 4 HOH A 6 606 7 HOH HOH . 
H 4 HOH A 7 607 3 HOH HOH . 
H 4 HOH A 8 608 8 HOH HOH . 
H 4 HOH A 9 609 1 HOH HOH . 
H 4 HOH A 10 610 43 HOH HOH . 
H 4 HOH A 11 611 72 HOH HOH . 
H 4 HOH A 12 612 67 HOH HOH . 
H 4 HOH A 13 613 64 HOH HOH . 
H 4 HOH A 14 614 41 HOH HOH . 
H 4 HOH A 15 615 57 HOH HOH . 
H 4 HOH A 16 616 11 HOH HOH . 
H 4 HOH A 17 617 76 HOH HOH . 
H 4 HOH A 18 618 2 HOH HOH . 
H 4 HOH A 19 619 24 HOH HOH . 
H 4 HOH A 20 620 59 HOH HOH . 
H 4 HOH A 21 621 4 HOH HOH . 
H 4 HOH A 22 622 38 HOH HOH . 
H 4 HOH A 23 623 73 HOH HOH . 
H 4 HOH A 24 624 45 HOH HOH . 
H 4 HOH A 25 625 16 HOH HOH . 
H 4 HOH A 26 626 77 HOH HOH . 
H 4 HOH A 27 627 25 HOH HOH . 
H 4 HOH A 28 628 42 HOH HOH . 
H 4 HOH A 29 629 6 HOH HOH . 
H 4 HOH A 30 630 9 HOH HOH . 
H 4 HOH A 31 631 10 HOH HOH . 
H 4 HOH A 32 632 5 HOH HOH . 
H 4 HOH A 33 633 13 HOH HOH . 
H 4 HOH A 34 634 21 HOH HOH . 
H 4 HOH A 35 635 29 HOH HOH . 
H 4 HOH A 36 636 35 HOH HOH . 
H 4 HOH A 37 637 27 HOH HOH . 
H 4 HOH A 38 638 18 HOH HOH . 
H 4 HOH A 39 639 14 HOH HOH . 
H 4 HOH A 40 640 22 HOH HOH . 
H 4 HOH A 41 641 26 HOH HOH . 
H 4 HOH A 42 642 17 HOH HOH . 
H 4 HOH A 43 643 19 HOH HOH . 
H 4 HOH A 44 644 30 HOH HOH . 
H 4 HOH A 45 645 78 HOH HOH . 
H 4 HOH A 46 646 37 HOH HOH . 
H 4 HOH A 47 647 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 S6W . . . B 2 6.928 78.16 0.732 0.41 74.86 ? C10 S6W 501 A 1 
HETATM 2 N N S6W . . . B 2 8.169 74.332 -1.849 1 63.52 ? N S6W 501 A 1 
HETATM 3 C C S6W . . . B 2 8.861 73.821 -5.302 0.9 62.34 ? C S6W 501 A 1 
HETATM 4 O O S6W . . . B 2 9.592 77.358 0.746 0.87 86.88 ? O S6W 501 A 1 
HETATM 5 C C1 S6W . . . B 2 9.607 72.733 -5.283 0.92 68.58 ? C1 S6W 501 A 1 
HETATM 6 C C11 S6W . . . B 2 10.094 72.23 -6.623 0.82 59.14 ? C11 S6W 501 A 1 
HETATM 7 C C2 S6W . . . B 2 9.899 72.111 -4.146 1 73.3 ? C2 S6W 501 A 1 
HETATM 8 C C3 S6W . . . B 2 9.438 72.617 -3.006 0.82 71.05 ? C3 S6W 501 A 1 
HETATM 9 C C4 S6W . . . B 2 8.704 73.726 -3.036 0.9 66.81 ? C4 S6W 501 A 1 
HETATM 10 C C5 S6W . . . B 2 8.418 74.333 -4.175 0.76 69.2 ? C5 S6W 501 A 1 
HETATM 11 C C6 S6W . . . B 2 8.685 75.371 -1.211 0.98 74.9 ? C6 S6W 501 A 1 
HETATM 12 C C7 S6W . . . B 2 7.889 75.651 -0.187 0.7 72.6 ? C7 S6W 501 A 1 
HETATM 13 C C8 S6W . . . B 2 6.881 74.771 -0.205 0.75 64.37 ? C8 S6W 501 A 1 
HETATM 14 C C9 S6W . . . B 2 5.719 74.633 0.715 0.84 56.4 ? C9 S6W 501 A 1 
HETATM 15 F F S6W . . . B 2 5.867 77.593 0.169 0.46 70.37 ? F S6W 501 A 1 
HETATM 16 F F1 S6W . . . B 2 7.367 79.119 -0.081 0.65 77.78 ? F1 S6W 501 A 1 
HETATM 17 F F2 S6W . . . B 2 6.603 78.685 1.909 0.6 74.2 ? F2 S6W 501 A 1 
HETATM 18 F F3 S6W . . . B 2 11.377 72.556 -6.758 0.63 65.16 ? F3 S6W 501 A 1 
HETATM 19 F F4 S6W . . . B 2 9.935 70.918 -6.692 0.57 57.45 ? F4 S6W 501 A 1 
HETATM 20 F F5 S6W . . . B 2 9.362 72.84 -7.546 0.56 61.21 ? F5 S6W 501 A 1 
HETATM 21 N N1 S6W . . . B 2 7.057 73.966 -1.241 0.69 70.22 ? N1 S6W 501 A 1 
HETATM 22 N N2 S6W . . . B 2 5.355 75.285 1.755 0.78 62.06 ? N2 S6W 501 A 1 
HETATM 23 N N3 S6W . . . B 2 9.901 76.08 -1.572 1 74.45 ? N3 S6W 501 A 1 
HETATM 24 S S S6W . . . B 2 8.201 76.95 0.935 0.6 80.56 ? S S6W 501 A 1 
HETATM 25 CL CL S6W . . . B 2 7.462 75.768 -4.192 0.71 66.81 ? CL S6W 501 A 1 
HETATM 26 CL CL1 S6W . . . B 2 9.792 71.84 -1.509 0.9 84.98 ? CL1 S6W 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#