data_7AXG # _model_server_result.job_id JDzntPZTa3KglwSnjWHBEQ _model_server_result.datetime_utc '2024-11-28 12:10:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7axg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7AXG # _exptl.entry_id 7AXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.053 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description tributylstannanyl _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AXG _cell.length_a 92.32 _cell.length_b 92.32 _cell.length_c 86.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 92.32 92.32 -43.355 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc www.phenix-online.org/documentation/reference/refinement.html#definition-of-custom-bonds-and-angles metalc1 A SG CYS 89 A CYS 207 1_555 B SN1 TBY . A TBY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc www.phenix-online.org/documentation/reference/refinement.html#definition-of-custom-bonds-and-angles metalc2 A SG CYS 166 A CYS 284 1_555 C SN1 TBY . A TBY 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C12 H27 Sn' _chem_comp.formula_weight 290.053 _chem_comp.id TBY _chem_comp.mon_nstd_flag . _chem_comp.name tributylstannanyl _chem_comp.type non-polymer _chem_comp.pdbx_synonyms tributyltin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 TBY sing 290 n n C11 C12 TBY sing 291 n n C10 SN1 TBY sing 292 n n SN1 C2 TBY sing 293 n n SN1 C6 TBY sing 294 n n C2 C3 TBY sing 295 n n C3 C4 TBY sing 296 n n C4 C5 TBY sing 297 n n C6 C7 TBY sing 298 n n C7 C8 TBY sing 299 n n C8 C9 TBY sing 300 n n C12 C13 TBY sing 301 n n C11 H11 TBY sing 302 n n C11 H11A TBY sing 303 n n C10 H10 TBY sing 304 n n C10 H10A TBY sing 305 n n C2 H2 TBY sing 306 n n C2 H2A TBY sing 307 n n C3 H3 TBY sing 308 n n C3 H3A TBY sing 309 n n C4 H4 TBY sing 310 n n C4 H4A TBY sing 311 n n C5 H5 TBY sing 312 n n C5 H5A TBY sing 313 n n C5 H5B TBY sing 314 n n C6 H6 TBY sing 315 n n C6 H6A TBY sing 316 n n C7 H7 TBY sing 317 n n C7 H7A TBY sing 318 n n C8 H8 TBY sing 319 n n C8 H8A TBY sing 320 n n C9 H9 TBY sing 321 n n C9 H9A TBY sing 322 n n C9 H9B TBY sing 323 n n C12 H12 TBY sing 324 n n C12 H12A TBY sing 325 n n C13 H13 TBY sing 326 n n C13 H13A TBY sing 327 n n C13 H13B TBY sing 328 n n # _atom_sites.entry_id 7AXG _atom_sites.fract_transf_matrix[1][1] 0.010832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TBY A 1 501 1 TBY TBY . C 2 TBY A 1 502 2 TBY TBY . D 3 HOH A 1 601 51 HOH HOH . D 3 HOH A 2 602 62 HOH HOH . D 3 HOH A 3 603 7 HOH HOH . D 3 HOH A 4 604 55 HOH HOH . D 3 HOH A 5 605 52 HOH HOH . D 3 HOH A 6 606 6 HOH HOH . D 3 HOH A 7 607 53 HOH HOH . D 3 HOH A 8 608 14 HOH HOH . D 3 HOH A 9 609 57 HOH HOH . D 3 HOH A 10 610 18 HOH HOH . D 3 HOH A 11 611 16 HOH HOH . D 3 HOH A 12 612 48 HOH HOH . D 3 HOH A 13 613 5 HOH HOH . D 3 HOH A 14 614 8 HOH HOH . D 3 HOH A 15 615 39 HOH HOH . D 3 HOH A 16 616 64 HOH HOH . D 3 HOH A 17 617 9 HOH HOH . D 3 HOH A 18 618 13 HOH HOH . D 3 HOH A 19 619 56 HOH HOH . D 3 HOH A 20 620 2 HOH HOH . D 3 HOH A 21 621 60 HOH HOH . D 3 HOH A 22 622 4 HOH HOH . D 3 HOH A 23 623 10 HOH HOH . D 3 HOH A 24 624 49 HOH HOH . D 3 HOH A 25 625 3 HOH HOH . D 3 HOH A 26 626 41 HOH HOH . D 3 HOH A 27 627 33 HOH HOH . D 3 HOH A 28 628 40 HOH HOH . D 3 HOH A 29 629 27 HOH HOH . D 3 HOH A 30 630 20 HOH HOH . D 3 HOH A 31 631 43 HOH HOH . D 3 HOH A 32 632 63 HOH HOH . D 3 HOH A 33 633 59 HOH HOH . D 3 HOH A 34 634 61 HOH HOH . D 3 HOH A 35 635 65 HOH HOH . D 3 HOH A 36 636 31 HOH HOH . D 3 HOH A 37 637 19 HOH HOH . D 3 HOH A 38 638 26 HOH HOH . D 3 HOH A 39 639 58 HOH HOH . D 3 HOH A 40 640 15 HOH HOH . D 3 HOH A 41 641 17 HOH HOH . D 3 HOH A 42 642 32 HOH HOH . D 3 HOH A 43 643 21 HOH HOH . D 3 HOH A 44 644 24 HOH HOH . D 3 HOH A 45 645 23 HOH HOH . D 3 HOH A 46 646 35 HOH HOH . D 3 HOH A 47 647 67 HOH HOH . D 3 HOH A 48 648 54 HOH HOH . D 3 HOH A 49 649 66 HOH HOH . D 3 HOH A 50 650 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 TBY . . . C 2 8.092 75.951 -2.8 1 47.69 ? C11 TBY 502 A 1 HETATM 2 C C10 TBY . . . C 2 7.255 74.679 -2.778 1 43.01 ? C10 TBY 502 A 1 HETATM 3 SN SN1 TBY . . . C 2 6.811 73.969 -0.803 1 45.74 ? SN1 TBY 502 A 1 HETATM 4 C C2 TBY . . . C 2 6.916 75.483 0.713 1 48.27 ? C2 TBY 502 A 1 HETATM 5 C C3 TBY . . . C 2 6.97 76.89 0.148 1 47.95 ? C3 TBY 502 A 1 HETATM 6 C C4 TBY . . . C 2 7.308 77.822 1.312 1 49.49 ? C4 TBY 502 A 1 HETATM 7 C C5 TBY . . . C 2 6.36 78.996 1.336 1 48.57 ? C5 TBY 502 A 1 HETATM 8 C C6 TBY . . . C 2 8.117 72.255 -0.865 1 44.89 ? C6 TBY 502 A 1 HETATM 9 C C7 TBY . . . C 2 9.563 72.588 -1.192 1 45.8 ? C7 TBY 502 A 1 HETATM 10 C C8 TBY . . . C 2 10.463 71.446 -0.741 1 46.81 ? C8 TBY 502 A 1 HETATM 11 C C9 TBY . . . C 2 11.596 71.281 -1.719 1 47.14 ? C9 TBY 502 A 1 HETATM 12 C C12 TBY . . . C 2 9.123 75.914 -3.912 1 50.15 ? C12 TBY 502 A 1 HETATM 13 C C13 TBY . . . C 2 8.487 75.63 -5.251 1 44.8 ? C13 TBY 502 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #