data_7AXH # _model_server_result.job_id k_ppczIeZZS_Tk1ubCDRjQ _model_server_result.datetime_utc '2024-11-24 18:43:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7axh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7AXH # _exptl.entry_id 7AXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AXH _cell.length_a 91.903 _cell.length_b 91.903 _cell.length_c 86.125 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 91.903 91.903 -43.0625 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 298 n n C1 H11 MPD sing 299 n n C1 H12 MPD sing 300 n n C1 H13 MPD sing 301 n n C2 O2 MPD sing 302 n n C2 CM MPD sing 303 n n C2 C3 MPD sing 304 n n O2 HO2 MPD sing 305 n n CM HM1 MPD sing 306 n n CM HM2 MPD sing 307 n n CM HM3 MPD sing 308 n n C3 C4 MPD sing 309 n n C3 H31 MPD sing 310 n n C3 H32 MPD sing 311 n n C4 O4 MPD sing 312 n n C4 C5 MPD sing 313 n n C4 H4 MPD sing 314 n n O4 HO4 MPD sing 315 n n C5 H51 MPD sing 316 n n C5 H52 MPD sing 317 n n C5 H53 MPD sing 318 n n # _atom_sites.entry_id 7AXH _atom_sites.fract_transf_matrix[1][1] 0.010881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA A 1 501 1 IPA IPA . C 3 MPD A 1 502 1 MPD MPD . D 2 IPA A 1 503 1 IPA IPA . E 4 27J A 1 504 1 27J DRG . F 5 HOH A 1 601 52 HOH HOH . F 5 HOH A 2 602 70 HOH HOH . F 5 HOH A 3 603 37 HOH HOH . F 5 HOH A 4 604 47 HOH HOH . F 5 HOH A 5 605 25 HOH HOH . F 5 HOH A 6 606 62 HOH HOH . F 5 HOH A 7 607 26 HOH HOH . F 5 HOH A 8 608 50 HOH HOH . F 5 HOH A 9 609 30 HOH HOH . F 5 HOH A 10 610 39 HOH HOH . F 5 HOH A 11 611 17 HOH HOH . F 5 HOH A 12 612 3 HOH HOH . F 5 HOH A 13 613 11 HOH HOH . F 5 HOH A 14 614 34 HOH HOH . F 5 HOH A 15 615 31 HOH HOH . F 5 HOH A 16 616 4 HOH HOH . F 5 HOH A 17 617 5 HOH HOH . F 5 HOH A 18 618 41 HOH HOH . F 5 HOH A 19 619 48 HOH HOH . F 5 HOH A 20 620 63 HOH HOH . F 5 HOH A 21 621 12 HOH HOH . F 5 HOH A 22 622 7 HOH HOH . F 5 HOH A 23 623 27 HOH HOH . F 5 HOH A 24 624 32 HOH HOH . F 5 HOH A 25 625 13 HOH HOH . F 5 HOH A 26 626 36 HOH HOH . F 5 HOH A 27 627 44 HOH HOH . F 5 HOH A 28 628 56 HOH HOH . F 5 HOH A 29 629 22 HOH HOH . F 5 HOH A 30 630 64 HOH HOH . F 5 HOH A 31 631 49 HOH HOH . F 5 HOH A 32 632 35 HOH HOH . F 5 HOH A 33 633 10 HOH HOH . F 5 HOH A 34 634 54 HOH HOH . F 5 HOH A 35 635 33 HOH HOH . F 5 HOH A 36 636 53 HOH HOH . F 5 HOH A 37 637 66 HOH HOH . F 5 HOH A 38 638 65 HOH HOH . F 5 HOH A 39 639 6 HOH HOH . F 5 HOH A 40 640 23 HOH HOH . F 5 HOH A 41 641 60 HOH HOH . F 5 HOH A 42 642 42 HOH HOH . F 5 HOH A 43 643 2 HOH HOH . F 5 HOH A 44 644 21 HOH HOH . F 5 HOH A 45 645 40 HOH HOH . F 5 HOH A 46 646 68 HOH HOH . F 5 HOH A 47 647 20 HOH HOH . F 5 HOH A 48 648 28 HOH HOH . F 5 HOH A 49 649 59 HOH HOH . F 5 HOH A 50 650 67 HOH HOH . F 5 HOH A 51 651 51 HOH HOH . F 5 HOH A 52 652 18 HOH HOH . F 5 HOH A 53 653 24 HOH HOH . F 5 HOH A 54 654 45 HOH HOH . F 5 HOH A 55 655 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 3.97 57.345 -4.371 1 44.88 ? C1 MPD 502 A 1 HETATM 2 C C2 MPD . . . C 3 4.427 56.485 -3.186 1 53.25 ? C2 MPD 502 A 1 HETATM 3 O O2 MPD . . . C 3 5.876 56.536 -3.107 1 53.81 ? O2 MPD 502 A 1 HETATM 4 C CM MPD . . . C 3 3.874 57.05 -1.888 1 40.46 ? CM MPD 502 A 1 HETATM 5 C C3 MPD . . . C 3 3.963 55.027 -3.304 1 55.74 ? C3 MPD 502 A 1 HETATM 6 C C4 MPD . . . C 3 4.269 54.38 -4.663 1 64.86 ? C4 MPD 502 A 1 HETATM 7 O O4 MPD . . . C 3 5.497 54.861 -5.153 1 73.04 ? O4 MPD 502 A 1 HETATM 8 C C5 MPD . . . C 3 4.324 52.854 -4.592 1 66.3 ? C5 MPD 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #