data_7AXI # _model_server_result.job_id koQJ7OTJE_Y-UuRkSThr8A _model_server_result.datetime_utc '2024-11-24 18:38:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7axi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7AXI # _exptl.entry_id 7AXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AXI _cell.length_a 91.904 _cell.length_b 91.904 _cell.length_c 85.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 91.904 91.904 -42.8425 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 295 n n C1 H11 MPD sing 296 n n C1 H12 MPD sing 297 n n C1 H13 MPD sing 298 n n C2 O2 MPD sing 299 n n C2 CM MPD sing 300 n n C2 C3 MPD sing 301 n n O2 HO2 MPD sing 302 n n CM HM1 MPD sing 303 n n CM HM2 MPD sing 304 n n CM HM3 MPD sing 305 n n C3 C4 MPD sing 306 n n C3 H31 MPD sing 307 n n C3 H32 MPD sing 308 n n C4 O4 MPD sing 309 n n C4 C5 MPD sing 310 n n C4 H4 MPD sing 311 n n O4 HO4 MPD sing 312 n n C5 H51 MPD sing 313 n n C5 H52 MPD sing 314 n n C5 H53 MPD sing 315 n n # _atom_sites.entry_id 7AXI _atom_sites.fract_transf_matrix[1][1] 0.010881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EST A 1 501 600 EST EST . C 3 MPD A 1 502 1 MPD MPD . D 4 S6E A 1 503 1 S6E MCC . E 5 S6H A 1 504 1 S6H PCC . F 6 IPA A 1 505 1 IPA IPA . G 7 HOH A 1 601 125 HOH HOH . G 7 HOH A 2 602 151 HOH HOH . G 7 HOH A 3 603 142 HOH HOH . G 7 HOH A 4 604 52 HOH HOH . G 7 HOH A 5 605 150 HOH HOH . G 7 HOH A 6 606 106 HOH HOH . G 7 HOH A 7 607 38 HOH HOH . G 7 HOH A 8 608 20 HOH HOH . G 7 HOH A 9 609 56 HOH HOH . G 7 HOH A 10 610 14 HOH HOH . G 7 HOH A 11 611 7 HOH HOH . G 7 HOH A 12 612 13 HOH HOH . G 7 HOH A 13 613 3 HOH HOH . G 7 HOH A 14 614 10 HOH HOH . G 7 HOH A 15 615 30 HOH HOH . G 7 HOH A 16 616 99 HOH HOH . G 7 HOH A 17 617 22 HOH HOH . G 7 HOH A 18 618 50 HOH HOH . G 7 HOH A 19 619 43 HOH HOH . G 7 HOH A 20 620 12 HOH HOH . G 7 HOH A 21 621 68 HOH HOH . G 7 HOH A 22 622 11 HOH HOH . G 7 HOH A 23 623 16 HOH HOH . G 7 HOH A 24 624 5 HOH HOH . G 7 HOH A 25 625 64 HOH HOH . G 7 HOH A 26 626 149 HOH HOH . G 7 HOH A 27 627 49 HOH HOH . G 7 HOH A 28 628 29 HOH HOH . G 7 HOH A 29 629 143 HOH HOH . G 7 HOH A 30 630 100 HOH HOH . G 7 HOH A 31 631 17 HOH HOH . G 7 HOH A 32 632 19 HOH HOH . G 7 HOH A 33 633 54 HOH HOH . G 7 HOH A 34 634 114 HOH HOH . G 7 HOH A 35 635 60 HOH HOH . G 7 HOH A 36 636 59 HOH HOH . G 7 HOH A 37 637 133 HOH HOH . G 7 HOH A 38 638 33 HOH HOH . G 7 HOH A 39 639 55 HOH HOH . G 7 HOH A 40 640 8 HOH HOH . G 7 HOH A 41 641 40 HOH HOH . G 7 HOH A 42 642 1 HOH HOH . G 7 HOH A 43 643 120 HOH HOH . G 7 HOH A 44 644 4 HOH HOH . G 7 HOH A 45 645 63 HOH HOH . G 7 HOH A 46 646 35 HOH HOH . G 7 HOH A 47 647 61 HOH HOH . G 7 HOH A 48 648 109 HOH HOH . G 7 HOH A 49 649 51 HOH HOH . G 7 HOH A 50 650 57 HOH HOH . G 7 HOH A 51 651 34 HOH HOH . G 7 HOH A 52 652 28 HOH HOH . G 7 HOH A 53 653 2 HOH HOH . G 7 HOH A 54 654 53 HOH HOH . G 7 HOH A 55 655 71 HOH HOH . G 7 HOH A 56 656 46 HOH HOH . G 7 HOH A 57 657 25 HOH HOH . G 7 HOH A 58 658 123 HOH HOH . G 7 HOH A 59 659 67 HOH HOH . G 7 HOH A 60 660 147 HOH HOH . G 7 HOH A 61 661 18 HOH HOH . G 7 HOH A 62 662 42 HOH HOH . G 7 HOH A 63 663 115 HOH HOH . G 7 HOH A 64 664 41 HOH HOH . G 7 HOH A 65 665 80 HOH HOH . G 7 HOH A 66 666 27 HOH HOH . G 7 HOH A 67 667 21 HOH HOH . G 7 HOH A 68 668 31 HOH HOH . G 7 HOH A 69 669 98 HOH HOH . G 7 HOH A 70 670 126 HOH HOH . G 7 HOH A 71 671 6 HOH HOH . G 7 HOH A 72 672 108 HOH HOH . G 7 HOH A 73 673 135 HOH HOH . G 7 HOH A 74 674 83 HOH HOH . G 7 HOH A 75 675 58 HOH HOH . G 7 HOH A 76 676 121 HOH HOH . G 7 HOH A 77 677 45 HOH HOH . G 7 HOH A 78 678 112 HOH HOH . G 7 HOH A 79 679 44 HOH HOH . G 7 HOH A 80 680 62 HOH HOH . G 7 HOH A 81 681 36 HOH HOH . G 7 HOH A 82 682 24 HOH HOH . G 7 HOH A 83 683 140 HOH HOH . G 7 HOH A 84 684 128 HOH HOH . G 7 HOH A 85 685 116 HOH HOH . G 7 HOH A 86 686 134 HOH HOH . G 7 HOH A 87 687 39 HOH HOH . G 7 HOH A 88 688 129 HOH HOH . G 7 HOH A 89 689 127 HOH HOH . G 7 HOH A 90 690 94 HOH HOH . G 7 HOH A 91 691 15 HOH HOH . G 7 HOH A 92 692 47 HOH HOH . G 7 HOH A 93 693 130 HOH HOH . G 7 HOH A 94 694 122 HOH HOH . G 7 HOH A 95 695 97 HOH HOH . G 7 HOH A 96 696 132 HOH HOH . G 7 HOH A 97 697 32 HOH HOH . G 7 HOH A 98 698 131 HOH HOH . G 7 HOH A 99 699 111 HOH HOH . G 7 HOH A 100 700 118 HOH HOH . G 7 HOH A 101 701 96 HOH HOH . G 7 HOH A 102 702 119 HOH HOH . G 7 HOH A 103 703 144 HOH HOH . G 7 HOH A 104 704 110 HOH HOH . G 7 HOH A 105 705 102 HOH HOH . G 7 HOH A 106 706 75 HOH HOH . G 7 HOH A 107 707 137 HOH HOH . G 7 HOH A 108 708 84 HOH HOH . G 7 HOH A 109 709 82 HOH HOH . G 7 HOH A 110 710 136 HOH HOH . G 7 HOH A 111 711 124 HOH HOH . G 7 HOH A 112 712 145 HOH HOH . G 7 HOH A 113 713 105 HOH HOH . G 7 HOH A 114 714 113 HOH HOH . G 7 HOH A 115 715 101 HOH HOH . G 7 HOH A 116 716 146 HOH HOH . G 7 HOH A 117 717 117 HOH HOH . G 7 HOH A 118 718 139 HOH HOH . G 7 HOH A 119 719 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 4.244 57.605 -4.505 1 39.5 ? C1 MPD 502 A 1 HETATM 2 C C2 MPD . . . C 3 4.49 56.676 -3.31 1 46.99 ? C2 MPD 502 A 1 HETATM 3 O O2 MPD . . . C 3 5.913 56.494 -3.093 1 40.51 ? O2 MPD 502 A 1 HETATM 4 C CM MPD . . . C 3 3.949 57.362 -2.059 1 35.59 ? CM MPD 502 A 1 HETATM 5 C C3 MPD . . . C 3 3.816 55.304 -3.466 1 45.35 ? C3 MPD 502 A 1 HETATM 6 C C4 MPD . . . C 3 4.365 54.33 -4.525 1 54.34 ? C4 MPD 502 A 1 HETATM 7 O O4 MPD . . . C 3 4.813 54.976 -5.696 1 61.2 ? O4 MPD 502 A 1 HETATM 8 C C5 MPD . . . C 3 5.49 53.449 -3.99 1 47.33 ? C5 MPD 502 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #