data_7AXL # _model_server_result.job_id DYkA28a3dPehPzOn5c5nbg _model_server_result.datetime_utc '2024-11-25 02:06:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7axl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7AXL # _exptl.entry_id 7AXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AXL _cell.length_a 91.177 _cell.length_b 91.177 _cell.length_c 85.396 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id 'gel filtration' monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/2 0 -1 0 -1 0 0 0 0 -1 91.177 91.177 -42.698 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 284 n n C1 H11 MPD sing 285 n n C1 H12 MPD sing 286 n n C1 H13 MPD sing 287 n n C2 O2 MPD sing 288 n n C2 CM MPD sing 289 n n C2 C3 MPD sing 290 n n O2 HO2 MPD sing 291 n n CM HM1 MPD sing 292 n n CM HM2 MPD sing 293 n n CM HM3 MPD sing 294 n n C3 C4 MPD sing 295 n n C3 H31 MPD sing 296 n n C3 H32 MPD sing 297 n n C4 O4 MPD sing 298 n n C4 C5 MPD sing 299 n n C4 H4 MPD sing 300 n n O4 HO4 MPD sing 301 n n C5 H51 MPD sing 302 n n C5 H52 MPD sing 303 n n C5 H53 MPD sing 304 n n # _atom_sites.entry_id 7AXL _atom_sites.fract_transf_matrix[1][1] 0.010968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EST A 1 501 1 EST EST . C 3 S65 A 1 502 1 S65 HEP . D 4 MPD A 1 503 1 MPD MPD . E 5 HOH A 1 601 72 HOH HOH . E 5 HOH A 2 602 139 HOH HOH . E 5 HOH A 3 603 73 HOH HOH . E 5 HOH A 4 604 20 HOH HOH . E 5 HOH A 5 605 116 HOH HOH . E 5 HOH A 6 606 88 HOH HOH . E 5 HOH A 7 607 5 HOH HOH . E 5 HOH A 8 608 91 HOH HOH . E 5 HOH A 9 609 27 HOH HOH . E 5 HOH A 10 610 110 HOH HOH . E 5 HOH A 11 611 57 HOH HOH . E 5 HOH A 12 612 30 HOH HOH . E 5 HOH A 13 613 11 HOH HOH . E 5 HOH A 14 614 75 HOH HOH . E 5 HOH A 15 615 36 HOH HOH . E 5 HOH A 16 616 22 HOH HOH . E 5 HOH A 17 617 8 HOH HOH . E 5 HOH A 18 618 33 HOH HOH . E 5 HOH A 19 619 34 HOH HOH . E 5 HOH A 20 620 144 HOH HOH . E 5 HOH A 21 621 3 HOH HOH . E 5 HOH A 22 622 31 HOH HOH . E 5 HOH A 23 623 67 HOH HOH . E 5 HOH A 24 624 12 HOH HOH . E 5 HOH A 25 625 94 HOH HOH . E 5 HOH A 26 626 4 HOH HOH . E 5 HOH A 27 627 68 HOH HOH . E 5 HOH A 28 628 19 HOH HOH . E 5 HOH A 29 629 96 HOH HOH . E 5 HOH A 30 630 109 HOH HOH . E 5 HOH A 31 631 78 HOH HOH . E 5 HOH A 32 632 108 HOH HOH . E 5 HOH A 33 633 82 HOH HOH . E 5 HOH A 34 634 47 HOH HOH . E 5 HOH A 35 635 42 HOH HOH . E 5 HOH A 36 636 102 HOH HOH . E 5 HOH A 37 637 105 HOH HOH . E 5 HOH A 38 638 77 HOH HOH . E 5 HOH A 39 639 152 HOH HOH . E 5 HOH A 40 640 56 HOH HOH . E 5 HOH A 41 641 150 HOH HOH . E 5 HOH A 42 642 79 HOH HOH . E 5 HOH A 43 643 99 HOH HOH . E 5 HOH A 44 644 86 HOH HOH . E 5 HOH A 45 645 90 HOH HOH . E 5 HOH A 46 646 23 HOH HOH . E 5 HOH A 47 647 58 HOH HOH . E 5 HOH A 48 648 18 HOH HOH . E 5 HOH A 49 649 16 HOH HOH . E 5 HOH A 50 650 117 HOH HOH . E 5 HOH A 51 651 24 HOH HOH . E 5 HOH A 52 652 21 HOH HOH . E 5 HOH A 53 653 148 HOH HOH . E 5 HOH A 54 654 118 HOH HOH . E 5 HOH A 55 655 89 HOH HOH . E 5 HOH A 56 656 54 HOH HOH . E 5 HOH A 57 657 93 HOH HOH . E 5 HOH A 58 658 15 HOH HOH . E 5 HOH A 59 659 141 HOH HOH . E 5 HOH A 60 660 130 HOH HOH . E 5 HOH A 61 661 129 HOH HOH . E 5 HOH A 62 662 40 HOH HOH . E 5 HOH A 63 663 25 HOH HOH . E 5 HOH A 64 664 143 HOH HOH . E 5 HOH A 65 665 133 HOH HOH . E 5 HOH A 66 666 115 HOH HOH . E 5 HOH A 67 667 124 HOH HOH . E 5 HOH A 68 668 112 HOH HOH . E 5 HOH A 69 669 123 HOH HOH . E 5 HOH A 70 670 146 HOH HOH . E 5 HOH A 71 671 85 HOH HOH . E 5 HOH A 72 672 134 HOH HOH . E 5 HOH A 73 673 113 HOH HOH . E 5 HOH A 74 674 147 HOH HOH . E 5 HOH A 75 675 153 HOH HOH . E 5 HOH A 76 676 125 HOH HOH . E 5 HOH A 77 677 138 HOH HOH . E 5 HOH A 78 678 71 HOH HOH . E 5 HOH A 79 679 149 HOH HOH . E 5 HOH A 80 680 60 HOH HOH . E 5 HOH A 81 681 142 HOH HOH . E 5 HOH A 82 682 158 HOH HOH . E 5 HOH A 83 683 132 HOH HOH . E 5 HOH A 84 684 62 HOH HOH . E 5 HOH A 85 685 127 HOH HOH . E 5 HOH A 86 686 119 HOH HOH . E 5 HOH A 87 687 120 HOH HOH . E 5 HOH A 88 688 61 HOH HOH . E 5 HOH A 89 689 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . A . D 4 0.079 48.186 -1.506 0.49 49.09 ? C1 MPD 503 A 1 HETATM 2 C C1 MPD . B . D 4 -0.295 49.634 0.707 0.51 48.42 ? C1 MPD 503 A 1 HETATM 3 C C2 MPD . A . D 4 -0.637 48.865 -0.342 0.49 50.21 ? C2 MPD 503 A 1 HETATM 4 C C2 MPD . B . D 4 -0.757 48.924 -0.552 0.51 50.31 ? C2 MPD 503 A 1 HETATM 5 O O2 MPD . A . D 4 -2.074 48.807 -0.548 0.49 51.14 ? O2 MPD 503 A 1 HETATM 6 O O2 MPD . B . D 4 0.137 47.82 -0.854 0.51 50.59 ? O2 MPD 503 A 1 HETATM 7 C CM MPD . A . D 4 -0.311 48.122 0.951 0.49 48.87 ? CM MPD 503 A 1 HETATM 8 C CM MPD . B . D 4 -2.137 48.359 -0.244 0.51 51.24 ? CM MPD 503 A 1 HETATM 9 C C3 MPD . A . D 4 -0.207 50.327 -0.23 0.49 47.52 ? C3 MPD 503 A 1 HETATM 10 C C3 MPD . B . D 4 -0.787 49.886 -1.74 0.51 49.81 ? C3 MPD 503 A 1 HETATM 11 C C4 MPD . A . D 4 -0.105 51.015 -1.591 0.49 49.13 ? C4 MPD 503 A 1 HETATM 12 C C4 MPD . B . D 4 -0.688 51.36 -1.33 0.51 49.68 ? C4 MPD 503 A 1 HETATM 13 O O4 MPD . A . D 4 -1.279 51.756 -1.866 0.49 50.69 ? O4 MPD 503 A 1 HETATM 14 O O4 MPD . B . D 4 0.623 51.87 -1.501 0.51 46.13 ? O4 MPD 503 A 1 HETATM 15 C C5 MPD . A . D 4 1.112 51.936 -1.642 0.49 45.43 ? C5 MPD 503 A 1 HETATM 16 C C5 MPD . B . D 4 -1.688 52.195 -2.128 0.51 48.44 ? C5 MPD 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #