data_7AYM # _model_server_result.job_id w29dQdA9PGbDWCztb87BWQ _model_server_result.datetime_utc '2025-07-07 03:14:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7aym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7AYM # _exptl.entry_id 7AYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.436 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description N-[5-({[(3-fluorophenyl)carbamoyl]amino}methyl)-2-methylphenyl]imidazo[1,2-a]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AYM _cell.length_a 41.75 _cell.length_b 85.355 _cell.length_c 89.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H20 F N5 O2' _chem_comp.formula_weight 417.436 _chem_comp.id 4VD _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-({[(3-fluorophenyl)carbamoyl]amino}methyl)-2-methylphenyl]imidazo[1,2-a]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C15 4VD sing 1 n n C15 C14 4VD doub 2 n y C15 C17 4VD sing 3 n y C14 C13 4VD sing 4 n y C17 C11 4VD doub 5 n y C13 C12 4VD doub 6 n y N25 C24 4VD sing 7 n y N25 C26 4VD doub 8 n y C11 C12 4VD sing 9 n y C11 N10 4VD sing 10 n n C24 C23 4VD doub 11 n y O9 C8 4VD doub 12 n n C26 C27 4VD sing 13 n y C26 N31 4VD sing 14 n y C27 C28 4VD doub 15 n y N10 C8 4VD sing 16 n n C8 N7 4VD sing 17 n n C23 N31 4VD sing 18 n y C23 C21 4VD sing 19 n n N31 C30 4VD sing 20 n y N20 C21 4VD sing 21 n n N20 C19 4VD sing 22 n n C28 C29 4VD sing 23 n y C21 O22 4VD doub 24 n n N7 C6 4VD sing 25 n n C19 C18 4VD doub 26 n y C19 C2 4VD sing 27 n y C18 C5 4VD sing 28 n y C30 C29 4VD doub 29 n y C6 C5 4VD sing 30 n n C5 C4 4VD doub 31 n y C2 C1 4VD sing 32 n n C2 C3 4VD doub 33 n y C4 C3 4VD sing 34 n y C1 H34 4VD sing 35 n n C1 H33 4VD sing 36 n n C1 H32 4VD sing 37 n n C3 H35 4VD sing 38 n n C6 H38 4VD sing 39 n n C6 H37 4VD sing 40 n n C12 H41 4VD sing 41 n n C13 H42 4VD sing 42 n n C14 H43 4VD sing 43 n n C24 H47 4VD sing 44 n n C27 H48 4VD sing 45 n n C28 H49 4VD sing 46 n n C4 H36 4VD sing 47 n n N7 H39 4VD sing 48 n n N10 H40 4VD sing 49 n n C17 H44 4VD sing 50 n n C18 H45 4VD sing 51 n n N20 H46 4VD sing 52 n n C29 H50 4VD sing 53 n n C30 H51 4VD sing 54 n n # _atom_sites.entry_id 7AYM _atom_sites.fract_transf_matrix[1][1] 0.023952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4VD A 1 901 901 4VD XXX . C 3 HOH A 1 1001 12 HOH HOH . C 3 HOH A 2 1002 10 HOH HOH . C 3 HOH A 3 1003 7 HOH HOH . C 3 HOH A 4 1004 8 HOH HOH . C 3 HOH A 5 1005 13 HOH HOH . C 3 HOH A 6 1006 11 HOH HOH . C 3 HOH A 7 1007 9 HOH HOH . C 3 HOH A 8 1008 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4VD . . . B 2 1.349 -10.454 -16.39 1 54.45 ? C1 4VD 901 A 1 HETATM 2 C C2 4VD . . . B 2 1.737 -10.79 -14.974 1 54.14 ? C2 4VD 901 A 1 HETATM 3 C C3 4VD . . . B 2 1.819 -12.117 -14.559 1 54.45 ? C3 4VD 901 A 1 HETATM 4 C C5 4VD . . . B 2 2.719 -11.479 -12.417 1 53.73 ? C5 4VD 901 A 1 HETATM 5 C C6 4VD . . . B 2 3.352 -11.841 -11.098 1 54.46 ? C6 4VD 901 A 1 HETATM 6 C C8 4VD . . . B 2 2.07 -12.492 -9.106 1 52.24 ? C8 4VD 901 A 1 HETATM 7 O O9 4VD . . . B 2 2.417 -13.669 -9.196 1 50.22 ? O9 4VD 901 A 1 HETATM 8 C C11 4VD . . . B 2 0.736 -12.637 -6.966 1 53.95 ? C11 4VD 901 A 1 HETATM 9 C C12 4VD . . . B 2 0.901 -13.981 -6.637 1 54.44 ? C12 4VD 901 A 1 HETATM 10 C C13 4VD . . . B 2 0.527 -14.435 -5.381 1 54.43 ? C13 4VD 901 A 1 HETATM 11 C C14 4VD . . . B 2 -0.007 -13.564 -4.445 1 54.4 ? C14 4VD 901 A 1 HETATM 12 C C15 4VD . . . B 2 -0.182 -12.258 -4.814 1 50.97 ? C15 4VD 901 A 1 HETATM 13 C C19 4VD . . . B 2 2.105 -9.796 -14.051 1 54.13 ? C19 4VD 901 A 1 HETATM 14 C C21 4VD . . . B 2 2.863 -7.457 -14.291 1 51.37 ? C21 4VD 901 A 1 HETATM 15 C C23 4VD . . . B 2 2.328 -6.074 -14.39 1 51.23 ? C23 4VD 901 A 1 HETATM 16 C C24 4VD . . . B 2 1.055 -5.58 -14.337 1 54.38 ? C24 4VD 901 A 1 HETATM 17 C C26 4VD . . . B 2 2.298 -3.845 -14.59 1 51.81 ? C26 4VD 901 A 1 HETATM 18 C C27 4VD . . . B 2 2.881 -2.563 -14.715 1 54.41 ? C27 4VD 901 A 1 HETATM 19 C C28 4VD . . . B 2 4.235 -2.442 -14.753 1 54.45 ? C28 4VD 901 A 1 HETATM 20 C C4 4VD . . . B 2 2.302 -12.456 -13.308 1 54.41 ? C4 4VD 901 A 1 HETATM 21 N N7 4VD . . . B 2 2.49 -11.54 -9.966 1 54.36 ? N7 4VD 901 A 1 HETATM 22 N N10 4VD . . . B 2 1.221 -12.01 -8.145 1 54.42 ? N10 4VD 901 A 1 HETATM 23 F F16 4VD . . . B 2 -0.651 -11.379 -3.894 1 47.41 ? F16 4VD 901 A 1 HETATM 24 C C17 4VD . . . B 2 0.139 -11.772 -6.053 1 54.4 ? C17 4VD 901 A 1 HETATM 25 C C18 4VD . . . B 2 2.596 -10.145 -12.791 1 54.44 ? C18 4VD 901 A 1 HETATM 26 N N20 4VD . . . B 2 1.923 -8.435 -14.392 1 54.41 ? N20 4VD 901 A 1 HETATM 27 O O22 4VD . . . B 2 4.054 -7.679 -14.086 1 49.73 ? O22 4VD 901 A 1 HETATM 28 N N25 4VD . . . B 2 1.022 -4.216 -14.465 1 51.94 ? N25 4VD 901 A 1 HETATM 29 C C29 4VD . . . B 2 5.065 -3.582 -14.705 1 54.46 ? C29 4VD 901 A 1 HETATM 30 C C30 4VD . . . B 2 4.521 -4.816 -14.622 1 54.41 ? C30 4VD 901 A 1 HETATM 31 N N31 4VD . . . B 2 3.145 -4.95 -14.549 1 51.45 ? N31 4VD 901 A 1 HETATM 32 H H34 4VD . . . B 2 0.401 -9.921 -16.412 1 54.45 ? H34 4VD 901 A 1 HETATM 33 H H33 4VD . . . B 2 1.225 -11.338 -17.013 1 54.45 ? H33 4VD 901 A 1 HETATM 34 H H32 4VD . . . B 2 2.1 -9.84 -16.885 1 54.45 ? H32 4VD 901 A 1 HETATM 35 H H35 4VD . . . B 2 1.486 -12.904 -15.232 1 54.45 ? H35 4VD 901 A 1 HETATM 36 H H38 4VD . . . B 2 3.647 -12.888 -11.117 1 54.45 ? H38 4VD 901 A 1 HETATM 37 H H37 4VD . . . B 2 4.289 -11.296 -10.992 1 54.45 ? H37 4VD 901 A 1 HETATM 38 H H41 4VD . . . B 2 1.295 -14.705 -7.347 1 54.45 ? H41 4VD 901 A 1 HETATM 39 H H42 4VD . . . B 2 0.658 -15.486 -5.125 1 54.45 ? H42 4VD 901 A 1 HETATM 40 H H43 4VD . . . B 2 -0.277 -13.915 -3.45 1 54.45 ? H43 4VD 901 A 1 HETATM 41 H H47 4VD . . . B 2 0.134 -6.143 -14.192 1 54.45 ? H47 4VD 901 A 1 HETATM 42 H H48 4VD . . . B 2 2.212 -1.712 -14.816 1 54.45 ? H48 4VD 901 A 1 HETATM 43 H H49 4VD . . . B 2 4.702 -1.461 -14.822 1 54.45 ? H49 4VD 901 A 1 HETATM 44 H H36 4VD . . . B 2 2.352 -13.507 -13.027 1 54.45 ? H36 4VD 901 A 1 HETATM 45 H H39 4VD . . . B 2 2.243 -10.559 -9.883 1 54.45 ? H39 4VD 901 A 1 HETATM 46 H H40 4VD . . . B 2 0.849 -11.074 -8.258 1 54.45 ? H40 4VD 901 A 1 HETATM 47 H H44 4VD . . . B 2 -0.15 -10.757 -6.315 1 54.45 ? H44 4VD 901 A 1 HETATM 48 H H45 4VD . . . B 2 2.887 -9.375 -12.079 1 54.45 ? H45 4VD 901 A 1 HETATM 49 H H46 4VD . . . B 2 0.994 -8.215 -14.737 1 54.45 ? H46 4VD 901 A 1 HETATM 50 H H50 4VD . . . B 2 6.146 -3.457 -14.739 1 54.45 ? H50 4VD 901 A 1 HETATM 51 H H51 4VD . . . B 2 5.134 -5.714 -14.634 1 54.45 ? H51 4VD 901 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #