data_7AYR # _model_server_result.job_id Ig_4kNJO86rfrTLezzh7uA _model_server_result.datetime_utc '2024-12-12 21:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ayr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 7AYR # _exptl.entry_id 7AYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AYR _cell.length_a 149.563 _cell.length_b 149.563 _cell.length_c 269.633 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 755 A SER 755 1_555 E C8 S9W . A S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B OG SER 755 B SER 755 1_555 H C8 S9W . B S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 375 n n CAA HAA TMO sing 376 n n CAA HAAA TMO sing 377 n n CAA HAAB TMO sing 378 n n NAC CAD TMO sing 379 n n NAC CAB TMO sing 380 n n NAC OAE TMO sing 381 n n CAD HAD TMO sing 382 n n CAD HADA TMO sing 383 n n CAD HADB TMO sing 384 n n CAB HAB TMO sing 385 n n CAB HABA TMO sing 386 n n CAB HABB TMO sing 387 n n # _atom_sites.entry_id 7AYR _atom_sites.fract_transf_matrix[1][1] 0.006686 _atom_sites.fract_transf_matrix[1][2] 0.00386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TMO A 1 901 901 TMO TMO . D 3 PO4 A 1 902 1001 PO4 PO4 . E 4 S9W A 1 903 1 S9W 115 . F 2 TMO B 1 901 901 TMO TMO . G 3 PO4 B 1 902 1001 PO4 PO4 . H 4 S9W B 1 903 2 S9W 115 . I 5 HOH A 1 1001 5 HOH HOH . I 5 HOH A 2 1002 2 HOH HOH . I 5 HOH A 3 1003 4 HOH HOH . I 5 HOH A 4 1004 1 HOH HOH . J 5 HOH B 1 1001 7 HOH HOH . J 5 HOH B 2 1002 6 HOH HOH . J 5 HOH B 3 1003 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . F 2 105.381 98.085 -23.075 1 79.13 ? CAA TMO 901 B 1 HETATM 2 N NAC TMO . . . F 2 105.785 97.481 -24.342 1 82.8 ? NAC TMO 901 B 1 HETATM 3 C CAD TMO . . . F 2 104.647 96.756 -24.923 1 82.35 ? CAD TMO 901 B 1 HETATM 4 C CAB TMO . . . F 2 106.185 98.573 -25.215 1 76.98 ? CAB TMO 901 B 1 HETATM 5 O OAE TMO . . . F 2 106.87 96.56 -24.211 1 71.22 ? OAE TMO 901 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 463 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #