data_7AYR # _model_server_result.job_id v3niNLh5-7OAgqOISShr5A _model_server_result.datetime_utc '2024-12-12 21:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ayr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 7AYR # _exptl.entry_id 7AYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-[[4-[(4-bromophenyl)methyl]piperazin-1-yl]methyl]phenyl]-4-methanoyl-oxane-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AYR _cell.length_a 149.563 _cell.length_b 149.563 _cell.length_c 269.633 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 755 A SER 755 1_555 E C8 S9W . A S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B OG SER 755 B SER 755 1_555 H C8 S9W . B S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? # _chem_comp.formula 'C25 H30 Br N3 O3' _chem_comp.formula_weight 500.428 _chem_comp.id S9W _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-[[4-[(4-bromophenyl)methyl]piperazin-1-yl]methyl]phenyl]-4-methanoyl-oxane-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C29 S9W sing 281 n n C16 C15 S9W doub 282 n y C16 C17 S9W sing 283 n y C15 C14 S9W sing 284 n y C28 C29 S9W doub 285 n y C28 C27 S9W sing 286 n y C29 C30 S9W sing 287 n y C17 C12 S9W doub 288 n y C27 C26 S9W doub 289 n y C14 C18 S9W sing 290 n n C14 C13 S9W doub 291 n y C18 N19 S9W sing 292 n n C20 N19 S9W sing 293 n n C20 C21 S9W sing 294 n n C12 C13 S9W sing 295 n y C12 N11 S9W sing 296 n n C30 C31 S9W doub 297 n y N19 C24 S9W sing 298 n n C21 N22 S9W sing 299 n n C26 C31 S9W sing 300 n y C26 C25 S9W sing 301 n n N22 C25 S9W sing 302 n n N22 C23 S9W sing 303 n n C24 C23 S9W sing 304 n n N11 C10 S9W sing 305 n n C10 O33 S9W doub 306 n n C10 C2 S9W sing 307 n n C3 C2 S9W sing 308 n n C3 C4 S9W sing 309 n n C7 C2 S9W sing 310 n n C7 C6 S9W sing 311 n n C2 C8 S9W sing 312 n n O5 C4 S9W sing 313 n n O5 C6 S9W sing 314 n n C8 O9 S9W doub 315 n n C15 H1 S9W sing 316 n n C13 H2 S9W sing 317 n n C8 H3 S9W sing 318 n n C3 H4 S9W sing 319 n n C3 H5 S9W sing 320 n n C4 H6 S9W sing 321 n n C4 H7 S9W sing 322 n n C6 H8 S9W sing 323 n n C6 H9 S9W sing 324 n n C7 H10 S9W sing 325 n n C7 H11 S9W sing 326 n n N11 H12 S9W sing 327 n n C16 H13 S9W sing 328 n n C17 H14 S9W sing 329 n n C18 H15 S9W sing 330 n n C18 H16 S9W sing 331 n n C20 H18 S9W sing 332 n n C20 H19 S9W sing 333 n n C21 H20 S9W sing 334 n n C21 H21 S9W sing 335 n n C23 H23 S9W sing 336 n n C23 H24 S9W sing 337 n n C24 H25 S9W sing 338 n n C24 H26 S9W sing 339 n n C25 H27 S9W sing 340 n n C25 H28 S9W sing 341 n n C27 H29 S9W sing 342 n n C28 H30 S9W sing 343 n n C30 H31 S9W sing 344 n n C31 H32 S9W sing 345 n n # _atom_sites.entry_id 7AYR _atom_sites.fract_transf_matrix[1][1] 0.006686 _atom_sites.fract_transf_matrix[1][2] 0.00386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TMO A 1 901 901 TMO TMO . D 3 PO4 A 1 902 1001 PO4 PO4 . E 4 S9W A 1 903 1 S9W 115 . F 2 TMO B 1 901 901 TMO TMO . G 3 PO4 B 1 902 1001 PO4 PO4 . H 4 S9W B 1 903 2 S9W 115 . I 5 HOH A 1 1001 5 HOH HOH . I 5 HOH A 2 1002 2 HOH HOH . I 5 HOH A 3 1003 4 HOH HOH . I 5 HOH A 4 1004 1 HOH HOH . J 5 HOH B 1 1001 7 HOH HOH . J 5 HOH B 2 1002 6 HOH HOH . J 5 HOH B 3 1003 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 S9W . . . E 4 82.145 80.515 -1.333 1 66.18 ? C10 S9W 903 A 1 HETATM 2 C C15 S9W . . . E 4 82.845 77.469 -5.371 1 97.4 ? C15 S9W 903 A 1 HETATM 3 C C14 S9W . . . E 4 82.114 77.204 -4.224 1 86.05 ? C14 S9W 903 A 1 HETATM 4 C C13 S9W . . . E 4 82.002 78.18 -3.232 1 86.26 ? C13 S9W 903 A 1 HETATM 5 C C12 S9W . . . E 4 82.654 79.418 -3.414 1 92.02 ? C12 S9W 903 A 1 HETATM 6 C C8 S9W . . . E 4 82.24 81.555 0.917 1 71.93 ? C8 S9W 903 A 1 HETATM 7 C C2 S9W . . . E 4 82.009 81.824 -0.58 1 69.66 ? C2 S9W 903 A 1 HETATM 8 C C3 S9W . . . E 4 82.908 82.948 -1.133 1 67.88 ? C3 S9W 903 A 1 HETATM 9 C C4 S9W . . . E 4 82.565 84.26 -0.453 1 67.51 ? C4 S9W 903 A 1 HETATM 10 C C6 S9W . . . E 4 80.254 83.617 -0.201 1 61.37 ? C6 S9W 903 A 1 HETATM 11 C C7 S9W . . . E 4 80.589 82.282 -0.841 1 61.11 ? C7 S9W 903 A 1 HETATM 12 O O5 S9W . . . E 4 81.187 84.61 -0.577 1 69.07 ? O5 S9W 903 A 1 HETATM 13 O O9 S9W . . . E 4 81.34 81.402 1.752 1 64.66 ? O9 S9W 903 A 1 HETATM 14 N N11 S9W . . . E 4 82.688 80.465 -2.533 1 82.28 ? N11 S9W 903 A 1 HETATM 15 C C16 S9W . . . E 4 83.488 78.693 -5.565 1 100.5 ? C16 S9W 903 A 1 HETATM 16 C C17 S9W . . . E 4 83.393 79.656 -4.59 1 94.23 ? C17 S9W 903 A 1 HETATM 17 C C18 S9W . . . E 4 81.426 75.862 -4.125 1 81.14 ? C18 S9W 903 A 1 HETATM 18 N N19 S9W . . . E 4 82.069 74.923 -3.201 1 86.48 ? N19 S9W 903 A 1 HETATM 19 C C20 S9W . . . E 4 83.355 74.493 -3.764 1 84.97 ? C20 S9W 903 A 1 HETATM 20 C C21 S9W . . . E 4 83.857 73.174 -3.148 1 93.23 ? C21 S9W 903 A 1 HETATM 21 N N22 S9W . . . E 4 82.85 72.084 -3.078 1 82.89 ? N22 S9W 903 A 1 HETATM 22 C C23 S9W . . . E 4 81.761 72.639 -2.262 1 80 ? C23 S9W 903 A 1 HETATM 23 C C24 S9W . . . E 4 81.139 73.784 -3.051 1 80.32 ? C24 S9W 903 A 1 HETATM 24 C C25 S9W . . . E 4 83.379 70.859 -2.408 1 84.14 ? C25 S9W 903 A 1 HETATM 25 C C26 S9W . . . E 4 84.548 70.242 -3.144 1 78.05 ? C26 S9W 903 A 1 HETATM 26 C C27 S9W . . . E 4 84.488 70.342 -4.516 1 81.64 ? C27 S9W 903 A 1 HETATM 27 C C28 S9W . . . E 4 85.529 69.837 -5.272 1 91.86 ? C28 S9W 903 A 1 HETATM 28 C C29 S9W . . . E 4 86.631 69.211 -4.691 1 92.31 ? C29 S9W 903 A 1 HETATM 29 C C30 S9W . . . E 4 86.71 69.081 -3.288 1 79.97 ? C30 S9W 903 A 1 HETATM 30 C C31 S9W . . . E 4 85.652 69.619 -2.519 1 77.95 ? C31 S9W 903 A 1 HETATM 31 BR BR1 S9W . . . E 4 87.9 68.61 -5.976 1 127.33 ? BR1 S9W 903 A 1 HETATM 32 O O33 S9W . . . E 4 81.685 79.55 -0.843 1 74.43 ? O33 S9W 903 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 90 _model_server_stats.query_time_ms 915 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #