data_7AYR
#
_model_server_result.job_id            Qi2iqDy0XtU_ODJNPCkAnw 
_model_server_result.datetime_utc      '2024-12-12 21:29:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ayr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":903}' 
#
_entry.id    7AYR 
#
_exptl.entry_id    7AYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              500.428 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[3-[[4-[(4-bromophenyl)methyl]piperazin-1-yl]methyl]phenyl]-4-methanoyl-oxane-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7AYR 
_cell.length_a            149.563 
_cell.length_b            149.563 
_cell.length_c            269.633 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7AYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 755 A SER 755 1_555 E C8 S9W . A S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 B OG SER 755 B SER 755 1_555 H C8 S9W . B S9W 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
#
_chem_comp.formula           'C25 H30 Br N3 O3' 
_chem_comp.formula_weight    500.428 
_chem_comp.id                S9W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[3-[[4-[(4-bromophenyl)methyl]piperazin-1-yl]methyl]phenyl]-4-methanoyl-oxane-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR1 C29 S9W sing 281 n n 
C16 C15 S9W doub 282 n y 
C16 C17 S9W sing 283 n y 
C15 C14 S9W sing 284 n y 
C28 C29 S9W doub 285 n y 
C28 C27 S9W sing 286 n y 
C29 C30 S9W sing 287 n y 
C17 C12 S9W doub 288 n y 
C27 C26 S9W doub 289 n y 
C14 C18 S9W sing 290 n n 
C14 C13 S9W doub 291 n y 
C18 N19 S9W sing 292 n n 
C20 N19 S9W sing 293 n n 
C20 C21 S9W sing 294 n n 
C12 C13 S9W sing 295 n y 
C12 N11 S9W sing 296 n n 
C30 C31 S9W doub 297 n y 
N19 C24 S9W sing 298 n n 
C21 N22 S9W sing 299 n n 
C26 C31 S9W sing 300 n y 
C26 C25 S9W sing 301 n n 
N22 C25 S9W sing 302 n n 
N22 C23 S9W sing 303 n n 
C24 C23 S9W sing 304 n n 
N11 C10 S9W sing 305 n n 
C10 O33 S9W doub 306 n n 
C10 C2 S9W sing 307 n n 
C3 C2 S9W sing 308 n n 
C3 C4 S9W sing 309 n n 
C7 C2 S9W sing 310 n n 
C7 C6 S9W sing 311 n n 
C2 C8 S9W sing 312 n n 
O5 C4 S9W sing 313 n n 
O5 C6 S9W sing 314 n n 
C8 O9 S9W doub 315 n n 
C15 H1 S9W sing 316 n n 
C13 H2 S9W sing 317 n n 
C8 H3 S9W sing 318 n n 
C3 H4 S9W sing 319 n n 
C3 H5 S9W sing 320 n n 
C4 H6 S9W sing 321 n n 
C4 H7 S9W sing 322 n n 
C6 H8 S9W sing 323 n n 
C6 H9 S9W sing 324 n n 
C7 H10 S9W sing 325 n n 
C7 H11 S9W sing 326 n n 
N11 H12 S9W sing 327 n n 
C16 H13 S9W sing 328 n n 
C17 H14 S9W sing 329 n n 
C18 H15 S9W sing 330 n n 
C18 H16 S9W sing 331 n n 
C20 H18 S9W sing 332 n n 
C20 H19 S9W sing 333 n n 
C21 H20 S9W sing 334 n n 
C21 H21 S9W sing 335 n n 
C23 H23 S9W sing 336 n n 
C23 H24 S9W sing 337 n n 
C24 H25 S9W sing 338 n n 
C24 H26 S9W sing 339 n n 
C25 H27 S9W sing 340 n n 
C25 H28 S9W sing 341 n n 
C27 H29 S9W sing 342 n n 
C28 H30 S9W sing 343 n n 
C30 H31 S9W sing 344 n n 
C31 H32 S9W sing 345 n n 
#
_atom_sites.entry_id                     7AYR 
_atom_sites.fract_transf_matrix[1][1]    0.006686 
_atom_sites.fract_transf_matrix[1][2]    0.00386 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TMO A 1 901 901 TMO TMO . 
D 3 PO4 A 1 902 1001 PO4 PO4 . 
E 4 S9W A 1 903 1 S9W 115 . 
F 2 TMO B 1 901 901 TMO TMO . 
G 3 PO4 B 1 902 1001 PO4 PO4 . 
H 4 S9W B 1 903 2 S9W 115 . 
I 5 HOH A 1 1001 5 HOH HOH . 
I 5 HOH A 2 1002 2 HOH HOH . 
I 5 HOH A 3 1003 4 HOH HOH . 
I 5 HOH A 4 1004 1 HOH HOH . 
J 5 HOH B 1 1001 7 HOH HOH . 
J 5 HOH B 2 1002 6 HOH HOH . 
J 5 HOH B 3 1003 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 S9W . . . H 4 108.307 96.515 -17.43 1 78.52 ? C10 S9W 903 B 1 
HETATM 2 C C15 S9W . . . H 4 110.976 94.788 -13.41 1 91.83 ? C15 S9W 903 B 1 
HETATM 3 C C14 S9W . . . H 4 111.461 95.38 -14.581 1 85.9 ? C14 S9W 903 B 1 
HETATM 4 C C13 S9W . . . H 4 110.572 95.882 -15.54 1 78.24 ? C13 S9W 903 B 1 
HETATM 5 C C12 S9W . . . H 4 109.163 95.749 -15.303 1 96.61 ? C12 S9W 903 B 1 
HETATM 6 C C8 S9W . . . H 4 107.386 96.732 -19.671 1 68.96 ? C8 S9W 903 B 1 
HETATM 7 C C2 S9W . . . H 4 107.209 97.161 -18.218 1 74.46 ? C2 S9W 903 B 1 
HETATM 8 C C3 S9W . . . H 4 105.82 96.784 -17.69 1 70.32 ? C3 S9W 903 B 1 
HETATM 9 C C4 S9W . . . H 4 104.75 97.7 -18.29 1 69.54 ? C4 S9W 903 B 1 
HETATM 10 C C6 S9W . . . H 4 106.337 99.51 -18.743 1 64.02 ? C6 S9W 903 B 1 
HETATM 11 C C7 S9W . . . H 4 107.457 98.685 -18.111 1 66.45 ? C7 S9W 903 B 1 
HETATM 12 O O5 S9W . . . H 4 105.082 99.093 -18.14 1 72.76 ? O5 S9W 903 B 1 
HETATM 13 O O9 S9W . . . H 4 107.799 97.457 -20.56 1 62.88 ? O9 S9W 903 B 1 
HETATM 14 N N11 S9W . . . H 4 108.135 96.108 -16.163 1 87.09 ? N11 S9W 903 B 1 
HETATM 15 C C16 S9W . . . H 4 109.609 94.635 -13.178 1 89.38 ? C16 S9W 903 B 1 
HETATM 16 C C17 S9W . . . H 4 108.717 95.122 -14.114 1 92.76 ? C17 S9W 903 B 1 
HETATM 17 C C18 S9W . . . H 4 112.964 95.5 -14.715 1 87.61 ? C18 S9W 903 B 1 
HETATM 18 N N19 S9W . . . H 4 113.676 94.348 -15.283 1 84.04 ? N19 S9W 903 B 1 
HETATM 19 C C20 S9W . . . H 4 113.487 93.17 -14.441 1 81.83 ? C20 S9W 903 B 1 
HETATM 20 C C21 S9W . . . H 4 114.305 91.998 -14.98 1 88.26 ? C21 S9W 903 B 1 
HETATM 21 N N22 S9W . . . H 4 115.764 92.3 -15.082 1 83.85 ? N22 S9W 903 B 1 
HETATM 22 C C23 S9W . . . H 4 115.954 93.51 -15.91 1 81.11 ? C23 S9W 903 B 1 
HETATM 23 C C24 S9W . . . H 4 115.12 94.682 -15.383 1 77.79 ? C24 S9W 903 B 1 
HETATM 24 C C25 S9W . . . H 4 116.444 91.142 -15.689 1 79.75 ? C25 S9W 903 B 1 
HETATM 25 C C26 S9W . . . H 4 116.474 89.947 -14.755 1 70.78 ? C26 S9W 903 B 1 
HETATM 26 C C27 S9W . . . H 4 116.396 90.216 -13.413 1 77.88 ? C27 S9W 903 B 1 
HETATM 27 C C28 S9W . . . H 4 116.426 89.165 -12.522 1 85.3 ? C28 S9W 903 B 1 
HETATM 28 C C29 S9W . . . H 4 116.564 87.853 -12.966 1 88.82 ? C29 S9W 903 B 1 
HETATM 29 C C30 S9W . . . H 4 116.668 87.533 -14.32 1 74.45 ? C30 S9W 903 B 1 
HETATM 30 C C31 S9W . . . H 4 116.604 88.615 -15.205 1 74.51 ? C31 S9W 903 B 1 
HETATM 31 BR BR1 S9W . . . H 4 116.591 86.611 -11.554 1 113.94 ? BR1 S9W 903 B 1 
HETATM 32 O O33 S9W . . . H 4 109.365 96.499 -18.009 1 103.97 ? O33 S9W 903 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           414 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#