data_7AYX # _model_server_result.job_id ebJq2nItTvdgqHib-3PdZA _model_server_result.datetime_utc '2025-02-25 09:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ayx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7AYX # _exptl.entry_id 7AYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7AYX _cell.length_a 149.263 _cell.length_b 149.263 _cell.length_c 107.188 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,BA 1 1 B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 358 A CYS 355 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc2 B SG CYS 358 B CYS 355 1_555 P FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7AYX _atom_sites.fract_transf_matrix[1][1] 0.0067 _atom_sites.fract_transf_matrix[1][2] 0.003868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 500 HEM HEM . D 3 SO4 A 1 502 1 SO4 SO4 . E 3 SO4 A 1 503 2 SO4 SO4 . F 3 SO4 A 1 504 8 SO4 SO4 . G 3 SO4 A 1 505 9 SO4 SO4 . H 3 SO4 A 1 506 10 SO4 SO4 . I 3 SO4 A 1 507 11 SO4 SO4 . J 3 SO4 A 1 508 12 SO4 SO4 . K 3 SO4 A 1 509 13 SO4 SO4 . L 3 SO4 A 1 510 19 SO4 SO4 . M 3 SO4 A 1 511 20 SO4 SO4 . N 3 SO4 A 1 512 21 SO4 SO4 . O 3 SO4 A 1 513 22 SO4 SO4 . P 2 HEM B 1 501 500 HEM HEM . Q 3 SO4 B 1 502 3 SO4 SO4 . R 3 SO4 B 1 503 4 SO4 SO4 . S 3 SO4 B 1 504 5 SO4 SO4 . T 3 SO4 B 1 505 6 SO4 SO4 . U 3 SO4 B 1 506 7 SO4 SO4 . V 3 SO4 B 1 507 14 SO4 SO4 . W 3 SO4 B 1 508 15 SO4 SO4 . X 3 SO4 B 1 509 16 SO4 SO4 . Y 3 SO4 B 1 510 17 SO4 SO4 . Z 3 SO4 B 1 511 18 SO4 SO4 . AA 3 SO4 B 1 512 23 SO4 SO4 . BA 4 HOH A 1 601 85 HOH HOH . BA 4 HOH A 2 602 6 HOH HOH . BA 4 HOH A 3 603 38 HOH HOH . BA 4 HOH A 4 604 39 HOH HOH . BA 4 HOH A 5 605 84 HOH HOH . BA 4 HOH A 6 606 45 HOH HOH . BA 4 HOH A 7 607 71 HOH HOH . BA 4 HOH A 8 608 33 HOH HOH . BA 4 HOH A 9 609 43 HOH HOH . BA 4 HOH A 10 610 7 HOH HOH . BA 4 HOH A 11 611 18 HOH HOH . BA 4 HOH A 12 612 72 HOH HOH . BA 4 HOH A 13 613 79 HOH HOH . BA 4 HOH A 14 614 47 HOH HOH . BA 4 HOH A 15 615 74 HOH HOH . BA 4 HOH A 16 616 80 HOH HOH . BA 4 HOH A 17 617 1 HOH HOH . BA 4 HOH A 18 618 2 HOH HOH . BA 4 HOH A 19 619 5 HOH HOH . BA 4 HOH A 20 620 36 HOH HOH . BA 4 HOH A 21 621 34 HOH HOH . BA 4 HOH A 22 622 50 HOH HOH . BA 4 HOH A 23 623 23 HOH HOH . BA 4 HOH A 24 624 3 HOH HOH . BA 4 HOH A 25 625 26 HOH HOH . BA 4 HOH A 26 626 41 HOH HOH . BA 4 HOH A 27 627 88 HOH HOH . BA 4 HOH A 28 628 4 HOH HOH . BA 4 HOH A 29 629 31 HOH HOH . BA 4 HOH A 30 630 48 HOH HOH . BA 4 HOH A 31 631 42 HOH HOH . BA 4 HOH A 32 632 37 HOH HOH . BA 4 HOH A 33 633 40 HOH HOH . BA 4 HOH A 34 634 35 HOH HOH . BA 4 HOH A 35 635 24 HOH HOH . BA 4 HOH A 36 636 75 HOH HOH . BA 4 HOH A 37 637 25 HOH HOH . BA 4 HOH A 38 638 44 HOH HOH . BA 4 HOH A 39 639 30 HOH HOH . BA 4 HOH A 40 640 91 HOH HOH . BA 4 HOH A 41 641 46 HOH HOH . BA 4 HOH A 42 642 81 HOH HOH . BA 4 HOH A 43 643 28 HOH HOH . BA 4 HOH A 44 644 27 HOH HOH . BA 4 HOH A 45 645 70 HOH HOH . BA 4 HOH A 46 646 32 HOH HOH . BA 4 HOH A 47 647 29 HOH HOH . BA 4 HOH A 48 648 49 HOH HOH . BA 4 HOH A 49 649 78 HOH HOH . CA 4 HOH B 1 601 17 HOH HOH . CA 4 HOH B 2 602 13 HOH HOH . CA 4 HOH B 3 603 58 HOH HOH . CA 4 HOH B 4 604 69 HOH HOH . CA 4 HOH B 5 605 54 HOH HOH . CA 4 HOH B 6 606 68 HOH HOH . CA 4 HOH B 7 607 89 HOH HOH . CA 4 HOH B 8 608 15 HOH HOH . CA 4 HOH B 9 609 59 HOH HOH . CA 4 HOH B 10 610 8 HOH HOH . CA 4 HOH B 11 611 11 HOH HOH . CA 4 HOH B 12 612 83 HOH HOH . CA 4 HOH B 13 613 53 HOH HOH . CA 4 HOH B 14 614 77 HOH HOH . CA 4 HOH B 15 615 61 HOH HOH . CA 4 HOH B 16 616 66 HOH HOH . CA 4 HOH B 17 617 87 HOH HOH . CA 4 HOH B 18 618 10 HOH HOH . CA 4 HOH B 19 619 90 HOH HOH . CA 4 HOH B 20 620 9 HOH HOH . CA 4 HOH B 21 621 22 HOH HOH . CA 4 HOH B 22 622 67 HOH HOH . CA 4 HOH B 23 623 56 HOH HOH . CA 4 HOH B 24 624 19 HOH HOH . CA 4 HOH B 25 625 16 HOH HOH . CA 4 HOH B 26 626 86 HOH HOH . CA 4 HOH B 27 627 12 HOH HOH . CA 4 HOH B 28 628 62 HOH HOH . CA 4 HOH B 29 629 52 HOH HOH . CA 4 HOH B 30 630 63 HOH HOH . CA 4 HOH B 31 631 20 HOH HOH . CA 4 HOH B 32 632 73 HOH HOH . CA 4 HOH B 33 633 21 HOH HOH . CA 4 HOH B 34 634 64 HOH HOH . CA 4 HOH B 35 635 76 HOH HOH . CA 4 HOH B 36 636 65 HOH HOH . CA 4 HOH B 37 637 57 HOH HOH . CA 4 HOH B 38 638 60 HOH HOH . CA 4 HOH B 39 639 14 HOH HOH . CA 4 HOH B 40 640 51 HOH HOH . CA 4 HOH B 41 641 82 HOH HOH . CA 4 HOH B 42 642 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -53.402 65.377 40.15 1 37.61 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . C 2 -57.286 67.862 41.55 1 37.33 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . C 2 -58.066 64.623 45.093 1 37.23 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . C 2 -53.99 62.337 43.88 1 37.13 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . C 2 -54.421 66.29 40.208 1 37.51 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . C 2 -54.632 67.328 39.276 1 37.66 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . C 2 -55.72 68.018 39.677 1 37.31 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . C 2 -56.187 67.427 40.856 1 37.34 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . C 2 -56.32 69.215 38.994 1 37.18 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . C 2 -53.831 67.629 38.041 1 37.98 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . C 2 -52.576 68.433 38.353 1 38.4 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . C 2 -51.844 68.706 37.071 1 38.7 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . C 2 -52.442 68.652 35.983 1 38.81 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . C 2 -50.636 68.998 37.094 1 38.74 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . C 2 -57.808 67.16 42.631 1 37.37 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . C 2 -58.985 67.583 43.279 1 37.6 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . C 2 -59.227 66.681 44.272 1 37.59 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . C 2 -58.144 65.696 44.211 1 37.38 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . C 2 -59.786 68.804 42.906 1 37.67 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . C 2 -60.311 66.651 45.257 1 37.84 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . C 2 -61.573 66.791 44.904 1 38.83 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . C 2 -57.038 63.702 45.057 1 36.84 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . C 2 -56.946 62.564 45.86 1 36.56 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . C 2 -55.776 61.92 45.509 1 36.87 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . C 2 -55.167 62.673 44.484 1 36.91 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . C 2 -57.946 62.146 46.909 1 36.17 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . C 2 -55.255 60.67 46.07 1 37.45 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . C 2 -54.904 60.591 47.34 1 38.22 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . C 2 -53.537 63.027 42.765 1 37.54 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . C 2 -52.32 62.599 42.088 1 37.33 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . C 2 -52.172 63.438 41.058 1 37.4 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . C 2 -53.287 64.376 41.097 1 37.63 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . C 2 -51.423 61.459 42.472 1 36.73 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . C 2 -51.057 63.447 40.061 1 37.44 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . C 2 -51.352 62.538 38.889 1 38.15 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . C 2 -50.27 62.863 37.913 1 38.87 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . C 2 -49.456 63.772 38.168 1 39.85 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . C 2 -50.189 62.229 36.855 1 39.11 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . C 2 -55.391 66.367 41.181 1 37.36 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . C 2 -57.341 66.051 43.205 1 37.33 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . C 2 -55.96 63.752 44.227 1 36.8 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . C 2 -54.072 64.088 42.138 1 37.88 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . C 2 -55.628 65.001 42.601 1 37.78 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #