data_7AYZ # _model_server_result.job_id Y7JZpObNFEvRtXhRtQHOoA _model_server_result.datetime_utc '2024-10-20 01:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ayz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 7AYZ # _exptl.entry_id 7AYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7AYZ _cell.length_a 80.833 _cell.length_b 81.802 _cell.length_c 170.643 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 AAA HIS 276 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A NE2 HIS 275 AAA HIS 282 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 E NI NI . AAA NI 402 1_555 B NE2 HIS 269 BBB HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 E NI NI . AAA NI 402 1_555 B NE2 HIS 275 BBB HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 E NI NI . AAA NI 402 1_555 C NE2 HIS 269 CCC HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 E NI NI . AAA NI 402 1_555 C NE2 HIS 275 CCC HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7AYZ _atom_sites.fract_transf_matrix[1][1] 0.012371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SEQ AAA 1 401 401 SEQ LIG . E 3 NI AAA 1 402 1 NI NI . F 2 SEQ BBB 1 401 401 SEQ LIG . G 2 SEQ CCC 1 401 401 SEQ LIG . H 4 HOH AAA 1 501 23 HOH HOH . H 4 HOH AAA 2 502 8 HOH HOH . H 4 HOH AAA 3 503 74 HOH HOH . H 4 HOH AAA 4 504 4 HOH HOH . H 4 HOH AAA 5 505 13 HOH HOH . H 4 HOH AAA 6 506 30 HOH HOH . H 4 HOH AAA 7 507 28 HOH HOH . H 4 HOH AAA 8 508 7 HOH HOH . H 4 HOH AAA 9 509 11 HOH HOH . H 4 HOH AAA 10 510 26 HOH HOH . H 4 HOH AAA 11 511 39 HOH HOH . H 4 HOH AAA 12 512 89 HOH HOH . H 4 HOH AAA 13 513 73 HOH HOH . H 4 HOH AAA 14 514 1 HOH HOH . H 4 HOH AAA 15 515 21 HOH HOH . H 4 HOH AAA 16 516 67 HOH HOH . H 4 HOH AAA 17 517 41 HOH HOH . H 4 HOH AAA 18 518 2 HOH HOH . H 4 HOH AAA 19 519 72 HOH HOH . H 4 HOH AAA 20 520 62 HOH HOH . H 4 HOH AAA 21 521 61 HOH HOH . H 4 HOH AAA 22 522 75 HOH HOH . H 4 HOH AAA 23 523 22 HOH HOH . H 4 HOH AAA 24 524 68 HOH HOH . H 4 HOH AAA 25 525 87 HOH HOH . H 4 HOH AAA 26 526 3 HOH HOH . H 4 HOH AAA 27 527 58 HOH HOH . H 4 HOH AAA 28 528 91 HOH HOH . H 4 HOH AAA 29 529 56 HOH HOH . H 4 HOH AAA 30 530 32 HOH HOH . I 4 HOH BBB 1 501 16 HOH HOH . I 4 HOH BBB 2 502 66 HOH HOH . I 4 HOH BBB 3 503 24 HOH HOH . I 4 HOH BBB 4 504 9 HOH HOH . I 4 HOH BBB 5 505 76 HOH HOH . I 4 HOH BBB 6 506 38 HOH HOH . I 4 HOH BBB 7 507 64 HOH HOH . I 4 HOH BBB 8 508 17 HOH HOH . I 4 HOH BBB 9 509 29 HOH HOH . I 4 HOH BBB 10 510 20 HOH HOH . I 4 HOH BBB 11 511 78 HOH HOH . I 4 HOH BBB 12 512 60 HOH HOH . I 4 HOH BBB 13 513 81 HOH HOH . I 4 HOH BBB 14 514 12 HOH HOH . I 4 HOH BBB 15 515 25 HOH HOH . I 4 HOH BBB 16 516 34 HOH HOH . I 4 HOH BBB 17 517 79 HOH HOH . I 4 HOH BBB 18 518 82 HOH HOH . I 4 HOH BBB 19 519 63 HOH HOH . I 4 HOH BBB 20 520 77 HOH HOH . I 4 HOH BBB 21 521 55 HOH HOH . I 4 HOH BBB 22 522 92 HOH HOH . I 4 HOH BBB 23 523 65 HOH HOH . I 4 HOH BBB 24 524 80 HOH HOH . J 4 HOH CCC 1 501 15 HOH HOH . J 4 HOH CCC 2 502 90 HOH HOH . J 4 HOH CCC 3 503 18 HOH HOH . J 4 HOH CCC 4 504 57 HOH HOH . J 4 HOH CCC 5 505 19 HOH HOH . J 4 HOH CCC 6 506 85 HOH HOH . J 4 HOH CCC 7 507 43 HOH HOH . J 4 HOH CCC 8 508 86 HOH HOH . J 4 HOH CCC 9 509 84 HOH HOH . J 4 HOH CCC 10 510 71 HOH HOH . J 4 HOH CCC 11 511 88 HOH HOH . J 4 HOH CCC 12 512 83 HOH HOH . J 4 HOH CCC 13 513 70 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.675 _atom_site.Cartn_y -4.393 _atom_site.Cartn_z 13.277 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #