data_7B0I # _model_server_result.job_id BysKnjHNz9bdpIH1bu01qA _model_server_result.datetime_utc '2025-01-18 05:43:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1401}' # _entry.id 7B0I # _exptl.entry_id 7B0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.659 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'spliceostatin A (form II)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7B0I _cell.length_a 108.503 _cell.length_b 108.503 _cell.length_c 358.938 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D SG CYS 36 D CYS 26 1_555 E C23 SJT . D SJT 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 D SG CYS 21 D CYS 11 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 D SG CYS 33 D CYS 23 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 D SG CYS 40 D CYS 30 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 D SG CYS 43 D CYS 33 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 D SG CYS 56 D CYS 46 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 D SG CYS 59 D CYS 49 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 D SG CYS 68 D CYS 58 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D SG CYS 71 D CYS 61 1_555 H ZN ZN . D ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 D SG CYS 82 D CYS 72 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 D SG CYS 85 D CYS 75 1_555 F ZN ZN . D ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 D SG CYS 95 D CYS 85 1_555 G ZN ZN . D ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc12 H ZN ZN . D ZN 1404 1_555 I O HOH . D HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C28 H45 N O8' _chem_comp.formula_weight 523.659 _chem_comp.id SJT _chem_comp.mon_nstd_flag . _chem_comp.name 'spliceostatin A (form II)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(~{Z},2~{S})-5-[[(2~{R},3~{R},5~{S},6~{S})-6-[(2~{E},4~{E})-5-[(2~{R},3~{R},4~{S},6~{S})-6-methoxy-4,6-dimethyl-3,4-bis(oxidanyl)oxan-2-yl]-3-methyl-penta-2,4-dienyl]-2,5-dimethyl-oxan-3-yl]amino]-5-oxidanylidene-pent-3-en-2-yl] ethanoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 SJT sing 290 n n C3 O1 SJT sing 291 n n C3 C2 SJT sing 292 n n O1 C5 SJT sing 293 n n C2 C1 SJT doub 294 z n C1 C SJT sing 295 n n O C SJT doub 296 n n C N SJT sing 297 n n C6 C5 SJT sing 298 n n C5 O2 SJT doub 299 n n C9 C8 SJT sing 300 n n N C7 SJT sing 301 n n C7 C8 SJT sing 302 n n C7 C13 SJT sing 303 n n C8 O3 SJT sing 304 n n C13 C11 SJT sing 305 n n O3 C10 SJT sing 306 n n C11 C10 SJT sing 307 n n C11 C12 SJT sing 308 n n C10 C14 SJT sing 309 n n C14 C15 SJT sing 310 n n C15 C16 SJT doub 311 e n C16 C17 SJT sing 312 n n C16 C18 SJT sing 313 n n C18 C19 SJT doub 314 e n C19 C20 SJT sing 315 n n O4 C21 SJT sing 316 n n C20 C21 SJT sing 317 n n C20 O6 SJT sing 318 n n C21 C22 SJT sing 319 n n O5 C22 SJT sing 320 n n O6 C25 SJT sing 321 n n C27 O7 SJT sing 322 n n C22 C23 SJT sing 323 n n C22 C24 SJT sing 324 n n O7 C25 SJT sing 325 n n C25 C24 SJT sing 326 n n C25 C26 SJT sing 327 n n C9 H1 SJT sing 328 n n C9 H2 SJT sing 329 n n C9 H3 SJT sing 330 n n C8 H4 SJT sing 331 n n C6 H5 SJT sing 332 n n C6 H6 SJT sing 333 n n C6 H7 SJT sing 334 n n C2 H8 SJT sing 335 n n C4 H9 SJT sing 336 n n C4 H10 SJT sing 337 n n C4 H11 SJT sing 338 n n N H12 SJT sing 339 n n C1 H13 SJT sing 340 n n C10 H14 SJT sing 341 n n C11 H15 SJT sing 342 n n C12 H16 SJT sing 343 n n C12 H17 SJT sing 344 n n C12 H18 SJT sing 345 n n C13 H19 SJT sing 346 n n C13 H20 SJT sing 347 n n C14 H21 SJT sing 348 n n C14 H22 SJT sing 349 n n C15 H23 SJT sing 350 n n C17 H24 SJT sing 351 n n C17 H25 SJT sing 352 n n C17 H26 SJT sing 353 n n C18 H27 SJT sing 354 n n C19 H28 SJT sing 355 n n C20 H29 SJT sing 356 n n C21 H30 SJT sing 357 n n C23 H31 SJT sing 358 n n C23 H32 SJT sing 359 n n C23 H33 SJT sing 360 n n C24 H34 SJT sing 361 n n C24 H35 SJT sing 362 n n C26 H36 SJT sing 363 n n C26 H37 SJT sing 364 n n C26 H38 SJT sing 365 n n C27 H39 SJT sing 366 n n C27 H40 SJT sing 367 n n C27 H41 SJT sing 368 n n C3 H42 SJT sing 369 n n C7 H43 SJT sing 370 n n O4 H44 SJT sing 371 n n O5 H45 SJT sing 372 n n # _atom_sites.entry_id 7B0I _atom_sites.fract_transf_matrix[1][1] 0.009216 _atom_sites.fract_transf_matrix[1][2] 0.005321 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SJT D 1 1401 1401 SJT SSA . F 6 ZN D 1 1402 2 ZN ZN . G 6 ZN D 1 1403 3 ZN ZN . H 6 ZN D 1 1404 4 ZN ZN . I 7 HOH D 1 1501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 SJT . . . E 5 -21.953 36.509 -35.106 1 92.18 ? C9 SJT 1401 D 1 HETATM 2 C C8 SJT . . . E 5 -21.701 35.372 -34.144 1 92.21 ? C8 SJT 1401 D 1 HETATM 3 C C5 SJT . . . E 5 -28.975 31.106 -35.125 1 114.65 ? C5 SJT 1401 D 1 HETATM 4 C C6 SJT . . . E 5 -30.407 30.697 -35.184 1 101.09 ? C6 SJT 1401 D 1 HETATM 5 C C2 SJT . . . E 5 -27.044 33.239 -36.131 1 97.48 ? C2 SJT 1401 D 1 HETATM 6 C C4 SJT . . . E 5 -26.652 31.477 -37.892 1 91.97 ? C4 SJT 1401 D 1 HETATM 7 N N SJT . . . E 5 -23.812 34.322 -34.825 1 86.15 ? N SJT 1401 D 1 HETATM 8 C C SJT . . . E 5 -24.632 33.405 -35.364 1 84.22 ? C SJT 1401 D 1 HETATM 9 O O SJT . . . E 5 -24.251 32.255 -35.638 1 82.53 ? O SJT 1401 D 1 HETATM 10 C C1 SJT . . . E 5 -26.003 33.892 -35.638 1 85.91 ? C1 SJT 1401 D 1 HETATM 11 C C10 SJT . . . E 5 -21.872 34.883 -31.81 1 92.58 ? C10 SJT 1401 D 1 HETATM 12 C C11 SJT . . . E 5 -22.545 33.529 -32.005 1 90.07 ? C11 SJT 1401 D 1 HETATM 13 C C12 SJT . . . E 5 -24.045 33.572 -31.723 1 85.57 ? C12 SJT 1401 D 1 HETATM 14 C C13 SJT . . . E 5 -22.252 33.012 -33.418 1 87.99 ? C13 SJT 1401 D 1 HETATM 15 C C14 SJT . . . E 5 -22.239 35.566 -30.495 1 87.09 ? C14 SJT 1401 D 1 HETATM 16 C C15 SJT . . . E 5 -21.707 34.834 -29.298 1 84.12 ? C15 SJT 1401 D 1 HETATM 17 C C16 SJT . . . E 5 -22.351 34.753 -28.131 1 83.19 ? C16 SJT 1401 D 1 HETATM 18 C C17 SJT . . . E 5 -23.684 35.395 -27.867 1 83.75 ? C17 SJT 1401 D 1 HETATM 19 C C18 SJT . . . E 5 -21.738 33.994 -27.056 1 92.8 ? C18 SJT 1401 D 1 HETATM 20 C C19 SJT . . . E 5 -22.206 33.796 -25.837 1 95.74 ? C19 SJT 1401 D 1 HETATM 21 C C20 SJT . . . E 5 -21.521 32.997 -24.775 1 95.65 ? C20 SJT 1401 D 1 HETATM 22 C C21 SJT . . . E 5 -22.235 31.689 -24.437 1 97.23 ? C21 SJT 1401 D 1 HETATM 23 C C22 SJT . . . E 5 -21.537 30.936 -23.294 1 98.24 ? C22 SJT 1401 D 1 HETATM 24 C C23 SJT . . . E 5 -22.349 29.737 -22.82 1 93.4 ? C23 SJT 1401 D 1 HETATM 25 C C24 SJT . . . E 5 -21.261 31.909 -22.141 1 99.42 ? C24 SJT 1401 D 1 HETATM 26 C C25 SJT . . . E 5 -20.527 33.166 -22.586 1 99.79 ? C25 SJT 1401 D 1 HETATM 27 C C26 SJT . . . E 5 -20.351 34.176 -21.48 1 96.79 ? C26 SJT 1401 D 1 HETATM 28 C C27 SJT . . . E 5 -18.346 33.743 -23.443 1 97.86 ? C27 SJT 1401 D 1 HETATM 29 C C3 SJT . . . E 5 -27.086 31.782 -36.477 1 102.13 ? C3 SJT 1401 D 1 HETATM 30 C C7 SJT . . . E 5 -22.409 34.07 -34.514 1 86.07 ? C7 SJT 1401 D 1 HETATM 31 O O1 SJT . . . E 5 -28.49 31.356 -36.363 1 126.21 ? O1 SJT 1401 D 1 HETATM 32 O O2 SJT . . . E 5 -28.318 31.209 -34.13 1 113.54 ? O2 SJT 1401 D 1 HETATM 33 O O3 SJT . . . E 5 -22.23 35.784 -32.868 1 94.29 ? O3 SJT 1401 D 1 HETATM 34 O O4 SJT . . . E 5 -22.328 30.875 -25.597 1 87.05 ? O4 SJT 1401 D 1 HETATM 35 O O5 SJT . . . E 5 -20.279 30.451 -23.799 1 90.96 ? O5 SJT 1401 D 1 HETATM 36 O O6 SJT . . . E 5 -21.347 33.794 -23.586 1 100.24 ? O6 SJT 1401 D 1 HETATM 37 O O7 SJT . . . E 5 -19.313 32.729 -23.15 1 96.1 ? O7 SJT 1401 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 37 #