data_7B0T # _model_server_result.job_id 4hbnakU7fUTLxuWiAK-wfQ _model_server_result.datetime_utc '2024-11-06 13:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7B0T # _exptl.entry_id 7B0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B0T _cell.length_a 48.739 _cell.length_b 48.739 _cell.length_c 131.995 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomer _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 I N4 O' _chem_comp.formula_weight 474.338 _chem_comp.id GKT _chem_comp.mon_nstd_flag . _chem_comp.name 3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 GKT sing 92 n n C2 C1 GKT doub 93 n y C2 C3 GKT sing 94 n y C1 C6 GKT sing 95 n y C3 C4 GKT doub 96 n y C6 I GKT sing 97 n n C6 C5 GKT doub 98 n y O C7 GKT doub 99 n n C4 C5 GKT sing 100 n y C4 C7 GKT sing 101 n n C7 N GKT sing 102 n n N C8 GKT sing 103 n n C20 C8 GKT doub 104 n y C20 C19 GKT sing 105 n y C8 C9 GKT sing 106 n y N3 C19 GKT sing 107 n y N3 C12 GKT sing 108 n y C19 C11 GKT doub 109 n y C9 C10 GKT doub 110 n y C12 C13 GKT sing 111 n n C12 N1 GKT doub 112 n y C11 C10 GKT sing 113 n y C11 N1 GKT sing 114 n y C13 N2 GKT sing 115 n n N2 C18 GKT sing 116 n n N2 C14 GKT sing 117 n n C18 C17 GKT sing 118 n n C17 C16 GKT sing 119 n n C14 C15 GKT sing 120 n n C16 C15 GKT sing 121 n n C2 H1 GKT sing 122 n n C3 H2 GKT sing 123 n n C5 H3 GKT sing 124 n n C H4 GKT sing 125 n n C H5 GKT sing 126 n n C H6 GKT sing 127 n n N H7 GKT sing 128 n n C20 H8 GKT sing 129 n n C10 H9 GKT sing 130 n n C9 H10 GKT sing 131 n n N3 H11 GKT sing 132 n n C13 H13 GKT sing 133 n n C13 H14 GKT sing 134 n n C18 H16 GKT sing 135 n n C18 H17 GKT sing 136 n n C17 H18 GKT sing 137 n n C17 H19 GKT sing 138 n n C16 H20 GKT sing 139 n n C16 H21 GKT sing 140 n n C15 H22 GKT sing 141 n n C15 H23 GKT sing 142 n n C14 H24 GKT sing 143 n n C14 H25 GKT sing 144 n n # _atom_sites.entry_id 7B0T _atom_sites.fract_transf_matrix[1][1] 0.020517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GKT A 1 201 201 GKT MMA . C 3 EDO A 1 202 301 EDO EDO . D 3 EDO A 1 203 401 EDO EDO . E 3 EDO A 1 204 501 EDO EDO . F 3 EDO A 1 205 601 EDO EDO . G 3 EDO A 1 206 701 EDO EDO . H 4 HOH A 1 301 16 HOH HOH . H 4 HOH A 2 302 13 HOH HOH . H 4 HOH A 3 303 5 HOH HOH . H 4 HOH A 4 304 1 HOH HOH . H 4 HOH A 5 305 2 HOH HOH . H 4 HOH A 6 306 3 HOH HOH . H 4 HOH A 7 307 15 HOH HOH . H 4 HOH A 8 308 14 HOH HOH . H 4 HOH A 9 309 17 HOH HOH . H 4 HOH A 10 310 7 HOH HOH . H 4 HOH A 11 311 10 HOH HOH . H 4 HOH A 12 312 19 HOH HOH . H 4 HOH A 13 313 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GKT . . . B 2 3.655 15.27 11.981 1 64.39 ? C1 GKT 201 A 1 HETATM 2 C C2 GKT . . . B 2 2.675 14.325 11.665 1 68.11 ? C2 GKT 201 A 1 HETATM 3 C C3 GKT . . . B 2 1.49 14.232 12.371 1 64.02 ? C3 GKT 201 A 1 HETATM 4 C C4 GKT . . . B 2 1.242 15.071 13.448 1 63.22 ? C4 GKT 201 A 1 HETATM 5 C C5 GKT . . . B 2 2.219 15.994 13.825 1 61.7 ? C5 GKT 201 A 1 HETATM 6 C C6 GKT . . . B 2 3.393 16.129 13.076 1 67.58 ? C6 GKT 201 A 1 HETATM 7 C C7 GKT . . . B 2 -0.122 15.065 14.066 1 55.95 ? C7 GKT 201 A 1 HETATM 8 O O GKT . . . B 2 -1.131 15.025 13.365 1 57.03 ? O GKT 201 A 1 HETATM 9 I I GKT . . . B 2 4.698 17.76 13.44 0.5 66.02 ? I GKT 201 A 1 HETATM 10 C C GKT . . . B 2 4.917 15.363 11.162 1 64.71 ? C GKT 201 A 1 HETATM 11 N N GKT . . . B 2 -0.153 15.121 15.42 1 53.43 ? N GKT 201 A 1 HETATM 12 C C8 GKT . . . B 2 -1.29 15.203 16.267 1 53.13 ? C8 GKT 201 A 1 HETATM 13 C C20 GKT . . . B 2 -2.554 14.737 15.881 1 53.27 ? C20 GKT 201 A 1 HETATM 14 C C19 GKT . . . B 2 -3.573 14.684 16.834 1 56.47 ? C19 GKT 201 A 1 HETATM 15 C C11 GKT . . . B 2 -3.324 15.102 18.137 1 58.05 ? C11 GKT 201 A 1 HETATM 16 C C10 GKT . . . B 2 -2.082 15.59 18.524 1 52.07 ? C10 GKT 201 A 1 HETATM 17 C C9 GKT . . . B 2 -1.069 15.648 17.578 1 50.26 ? C9 GKT 201 A 1 HETATM 18 N N3 GKT . . . B 2 -4.901 14.266 16.724 1 60.4 ? N3 GKT 201 A 1 HETATM 19 C C12 GKT . . . B 2 -5.423 14.455 17.924 1 64.17 ? C12 GKT 201 A 1 HETATM 20 N N1 GKT . . . B 2 -4.522 14.938 18.817 1 59.21 ? N1 GKT 201 A 1 HETATM 21 C C13 GKT . . . B 2 -6.89 14.393 18.226 1 67.77 ? C13 GKT 201 A 1 HETATM 22 N N2 GKT . . . B 2 -7.241 13.517 19.364 1 72.51 ? N2 GKT 201 A 1 HETATM 23 C C18 GKT . . . B 2 -8.314 12.582 19 1 70.21 ? C18 GKT 201 A 1 HETATM 24 C C17 GKT . . . B 2 -8.804 11.814 20.204 1 69.52 ? C17 GKT 201 A 1 HETATM 25 C C16 GKT . . . B 2 -7.672 11.051 20.862 1 69.49 ? C16 GKT 201 A 1 HETATM 26 C C15 GKT . . . B 2 -6.493 11.968 21.146 1 70.24 ? C15 GKT 201 A 1 HETATM 27 C C14 GKT . . . B 2 -6.094 12.766 19.903 1 68.73 ? C14 GKT 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #