data_7B16
#
_model_server_result.job_id            cJu8iJ3rzFBRGCl35S-QTQ 
_model_server_result.datetime_utc      '2024-10-15 11:24:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1001}' 
#
_entry.id    7B16 
#
_exptl.entry_id    7B16 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              648.891 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7B16 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7B16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 K N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 417 A GLU 417 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc2 A OD1 ASN 435 A ASN 435 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc3 A OD2 ASP 438 A ASP 438 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 B OE1 GLU 417 B GLU 417 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc5 B OD1 ASN 435 B ASN 435 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc6 B OD2 ASP 438 B ASP 438 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc7 C OE1 GLU 417 C GLU 417 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc8 C OD1 ASN 435 C ASN 435 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc9 C OD2 ASP 438 C ASP 438 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc10 D OE1 GLU 417 D GLU 417 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc11 D OD1 ASN 435 D ASN 435 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc12 D OD2 ASP 438 D ASP 438 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
#
_chem_comp.formula           'C35 H69 O8 P' 
_chem_comp.formula_weight    648.891 
_chem_comp.id                LPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O2 LPP sing 192 n n 
P1 O3 LPP doub 193 n n 
P1 O4 LPP sing 194 n n 
P1 O5 LPP sing 195 n n 
O2 HO2 LPP sing 196 n n 
O4 HO4 LPP sing 197 n n 
O5 C6 LPP sing 198 n n 
C6 C7 LPP sing 199 n n 
C6 HC61 LPP sing 200 n n 
C6 HC62 LPP sing 201 n n 
C7 C8 LPP sing 202 n n 
C7 O9 LPP sing 203 n n 
C7 HC7 LPP sing 204 n n 
C8 O27 LPP sing 205 n n 
C8 HC81 LPP sing 206 n n 
C8 HC82 LPP sing 207 n n 
O9 C11 LPP sing 208 n n 
O27 C29 LPP sing 209 n n 
C11 O10 LPP doub 210 n n 
C11 C12 LPP sing 211 n n 
C12 C13 LPP sing 212 n n 
C12 H121 LPP sing 213 n n 
C12 H122 LPP sing 214 n n 
C13 C14 LPP sing 215 n n 
C13 H131 LPP sing 216 n n 
C13 H132 LPP sing 217 n n 
C14 C15 LPP sing 218 n n 
C14 H141 LPP sing 219 n n 
C14 H142 LPP sing 220 n n 
C15 C16 LPP sing 221 n n 
C15 H151 LPP sing 222 n n 
C15 H152 LPP sing 223 n n 
C16 C17 LPP sing 224 n n 
C16 H161 LPP sing 225 n n 
C16 H162 LPP sing 226 n n 
C17 C18 LPP sing 227 n n 
C17 H171 LPP sing 228 n n 
C17 H172 LPP sing 229 n n 
C18 C19 LPP sing 230 n n 
C18 H181 LPP sing 231 n n 
C18 H182 LPP sing 232 n n 
C19 C20 LPP sing 233 n n 
C19 H191 LPP sing 234 n n 
C19 H192 LPP sing 235 n n 
C20 C21 LPP sing 236 n n 
C20 H201 LPP sing 237 n n 
C20 H202 LPP sing 238 n n 
C21 C22 LPP sing 239 n n 
C21 H211 LPP sing 240 n n 
C21 H212 LPP sing 241 n n 
C22 C23 LPP sing 242 n n 
C22 H221 LPP sing 243 n n 
C22 H222 LPP sing 244 n n 
C23 C24 LPP sing 245 n n 
C23 H231 LPP sing 246 n n 
C23 H232 LPP sing 247 n n 
C24 C25 LPP sing 248 n n 
C24 H241 LPP sing 249 n n 
C24 H242 LPP sing 250 n n 
C25 C26 LPP sing 251 n n 
C25 H251 LPP sing 252 n n 
C25 H252 LPP sing 253 n n 
C26 H261 LPP sing 254 n n 
C26 H262 LPP sing 255 n n 
C26 H263 LPP sing 256 n n 
C29 O28 LPP doub 257 n n 
C29 C30 LPP sing 258 n n 
C30 C31 LPP sing 259 n n 
C30 H301 LPP sing 260 n n 
C30 H302 LPP sing 261 n n 
C31 C32 LPP sing 262 n n 
C31 H311 LPP sing 263 n n 
C31 H312 LPP sing 264 n n 
C32 C33 LPP sing 265 n n 
C32 H321 LPP sing 266 n n 
C32 H322 LPP sing 267 n n 
C33 C34 LPP sing 268 n n 
C33 H331 LPP sing 269 n n 
C33 H332 LPP sing 270 n n 
C34 C35 LPP sing 271 n n 
C34 H341 LPP sing 272 n n 
C34 H342 LPP sing 273 n n 
C35 C36 LPP sing 274 n n 
C35 H351 LPP sing 275 n n 
C35 H352 LPP sing 276 n n 
C36 C37 LPP sing 277 n n 
C36 H361 LPP sing 278 n n 
C36 H362 LPP sing 279 n n 
C37 C38 LPP sing 280 n n 
C37 H371 LPP sing 281 n n 
C37 H372 LPP sing 282 n n 
C38 C39 LPP sing 283 n n 
C38 H381 LPP sing 284 n n 
C38 H382 LPP sing 285 n n 
C39 C40 LPP sing 286 n n 
C39 H391 LPP sing 287 n n 
C39 H392 LPP sing 288 n n 
C40 C41 LPP sing 289 n n 
C40 H401 LPP sing 290 n n 
C40 H402 LPP sing 291 n n 
C41 C42 LPP sing 292 n n 
C41 H411 LPP sing 293 n n 
C41 H412 LPP sing 294 n n 
C42 C43 LPP sing 295 n n 
C42 H421 LPP sing 296 n n 
C42 H422 LPP sing 297 n n 
C43 C44 LPP sing 298 n n 
C43 H431 LPP sing 299 n n 
C43 H432 LPP sing 300 n n 
C44 H441 LPP sing 301 n n 
C44 H442 LPP sing 302 n n 
C44 H443 LPP sing 303 n n 
#
_atom_sites.entry_id                     7B16 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SKQ A 1 1001 901 SKQ LIG . 
F 3 CA A 1 1002 902 CA CA . 
G 4 LPP A 1 1003 903 LPP LPP . 
H 4 LPP B 1 1001 903 LPP LPP . 
I 2 SKQ B 1 1002 901 SKQ LIG . 
J 3 CA B 1 1003 902 CA CA . 
K 4 LPP C 1 1001 903 LPP LPP . 
L 2 SKQ C 1 1002 901 SKQ LIG . 
M 3 CA C 1 1003 902 CA CA . 
N 4 LPP D 1 1001 903 LPP LPP . 
O 2 SKQ D 1 1002 901 SKQ LIG . 
P 3 CA D 1 1003 902 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LPP . . . H 4 117.935 118.338 161.924 1 30.54 ? P1 LPP 1001 B 1 
HETATM 2 O O2 LPP . . . H 4 117.943 118.97 163.288 1 30.54 ? O2 LPP 1001 B 1 
HETATM 3 O O3 LPP . . . H 4 118.883 117.185 161.892 1 30.54 ? O3 LPP 1001 B 1 
HETATM 4 O O4 LPP . . . H 4 116.565 117.845 161.577 1 30.54 ? O4 LPP 1001 B 1 
HETATM 5 O O5 LPP . . . H 4 118.412 119.388 160.775 1 30.54 ? O5 LPP 1001 B 1 
HETATM 6 C C6 LPP . . . H 4 117.676 119.368 159.601 1 30.54 ? C6 LPP 1001 B 1 
HETATM 7 C C7 LPP . . . H 4 118.192 118.193 158.812 1 30.54 ? C7 LPP 1001 B 1 
HETATM 8 C C8 LPP . . . H 4 117.215 117.032 158.855 1 30.54 ? C8 LPP 1001 B 1 
HETATM 9 O O9 LPP . . . H 4 118.512 118.593 157.52 1 30.54 ? O9 LPP 1001 B 1 
HETATM 10 O O27 LPP . . . H 4 117.759 116.07 159.707 1 30.54 ? O27 LPP 1001 B 1 
HETATM 11 C C11 LPP . . . H 4 117.478 118.911 156.652 1 30.54 ? C11 LPP 1001 B 1 
HETATM 12 O O10 LPP . . . H 4 116.577 119.559 157.006 1 30.54 ? O10 LPP 1001 B 1 
HETATM 13 C C12 LPP . . . H 4 117.515 118.463 155.209 1 30.54 ? C12 LPP 1001 B 1 
HETATM 14 C C13 LPP . . . H 4 116.783 119.461 154.329 1 30.54 ? C13 LPP 1001 B 1 
HETATM 15 C C14 LPP . . . H 4 117.029 119.192 152.854 1 30.54 ? C14 LPP 1001 B 1 
HETATM 16 C C15 LPP . . . H 4 116.139 120.043 151.963 1 30.54 ? C15 LPP 1001 B 1 
HETATM 17 C C16 LPP . . . H 4 116.409 119.803 150.483 1 30.54 ? C16 LPP 1001 B 1 
HETATM 18 C C17 LPP . . . H 4 115.61 120.737 149.582 1 30.54 ? C17 LPP 1001 B 1 
HETATM 19 C C18 LPP . . . H 4 115.935 120.529 148.104 1 30.54 ? C18 LPP 1001 B 1 
HETATM 20 C C19 LPP . . . H 4 115.836 121.813 147.285 1 30.54 ? C19 LPP 1001 B 1 
HETATM 21 C C20 LPP . . . H 4 114.712 121.759 146.258 1 30.54 ? C20 LPP 1001 B 1 
HETATM 22 C C21 LPP . . . H 4 114.666 122.989 145.357 1 30.54 ? C21 LPP 1001 B 1 
HETATM 23 C C22 LPP . . . H 4 113.737 124.078 145.894 1 30.54 ? C22 LPP 1001 B 1 
HETATM 24 C C23 LPP . . . H 4 113.279 125.052 144.807 1 30.54 ? C23 LPP 1001 B 1 
HETATM 25 C C24 LPP . . . H 4 113.106 126.486 145.297 1 30.54 ? C24 LPP 1001 B 1 
HETATM 26 C C25 LPP . . . H 4 111.682 126.772 145.767 1 30.54 ? C25 LPP 1001 B 1 
HETATM 27 C C26 LPP . . . H 4 111.287 128.228 145.539 1 30.54 ? C26 LPP 1001 B 1 
HETATM 28 C C29 LPP . . . H 4 118.317 114.971 159.049 1 30.54 ? C29 LPP 1001 B 1 
HETATM 29 O O28 LPP . . . H 4 117.671 113.999 158.893 1 30.54 ? O28 LPP 1001 B 1 
HETATM 30 C C30 LPP . . . H 4 119.75 115.006 158.531 1 30.54 ? C30 LPP 1001 B 1 
HETATM 31 C C31 LPP . . . H 4 119.915 114.238 157.226 1 30.54 ? C31 LPP 1001 B 1 
HETATM 32 C C32 LPP . . . H 4 119.745 115.151 156.021 1 30.54 ? C32 LPP 1001 B 1 
HETATM 33 C C33 LPP . . . H 4 120.896 115.022 155.036 1 30.54 ? C33 LPP 1001 B 1 
HETATM 34 C C34 LPP . . . H 4 120.396 114.802 153.616 1 30.54 ? C34 LPP 1001 B 1 
HETATM 35 C C35 LPP . . . H 4 120.99 115.79 152.62 1 30.54 ? C35 LPP 1001 B 1 
HETATM 36 C C36 LPP . . . H 4 119.95 116.782 152.111 1 30.54 ? C36 LPP 1001 B 1 
HETATM 37 C C37 LPP . . . H 4 120.49 117.649 150.98 1 30.54 ? C37 LPP 1001 B 1 
HETATM 38 C C38 LPP . . . H 4 121.859 118.224 151.312 1 30.54 ? C38 LPP 1001 B 1 
HETATM 39 C C39 LPP . . . H 4 122.256 119.309 150.323 1 30.54 ? C39 LPP 1001 B 1 
HETATM 40 C C40 LPP . . . H 4 123.566 119.977 150.699 1 30.54 ? C40 LPP 1001 B 1 
HETATM 41 C C41 LPP . . . H 4 124.174 120.703 149.508 1 30.54 ? C41 LPP 1001 B 1 
HETATM 42 C C42 LPP . . . H 4 125.687 120.844 149.626 1 30.54 ? C42 LPP 1001 B 1 
HETATM 43 C C43 LPP . . . H 4 126.417 120.688 148.295 1 30.54 ? C43 LPP 1001 B 1 
HETATM 44 C C44 LPP . . . H 4 127.739 119.956 148.481 1 30.54 ? C44 LPP 1001 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#