data_7B16 # _model_server_result.job_id UagJFp25JElf3mzGkQLl_A _model_server_result.datetime_utc '2024-12-01 11:01:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1002}' # _entry.id 7B16 # _exptl.entry_id 7B16 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 310.779 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloranyl-4-(4-cyclohexyl-3-oxidanylidene-piperazin-1-yl)-1~{H}-pyridazin-6-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B16 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 L N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 417 A GLU 417 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc2 A OD1 ASN 435 A ASN 435 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A OD2 ASP 438 A ASP 438 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 B OE1 GLU 417 B GLU 417 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 B OD1 ASN 435 B ASN 435 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc6 B OD2 ASP 438 B ASP 438 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc7 C OE1 GLU 417 C GLU 417 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc8 C OD1 ASN 435 C ASN 435 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 C OD2 ASP 438 C ASP 438 1_555 M CA CA . C CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc10 D OE1 GLU 417 D GLU 417 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc11 D OD1 ASN 435 D ASN 435 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc12 D OD2 ASP 438 D ASP 438 1_555 P CA CA . D CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? # _chem_comp.formula 'C14 H19 Cl N4 O2' _chem_comp.formula_weight 310.779 _chem_comp.id SKQ _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloranyl-4-(4-cyclohexyl-3-oxidanylidene-piperazin-1-yl)-1~{H}-pyridazin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GFB-9289 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 SKQ doub 400 n n C19 C18 SKQ sing 401 n n C19 C20 SKQ sing 402 n n C18 C17 SKQ sing 403 n n C16 C21 SKQ sing 404 n n C16 C17 SKQ sing 405 n n C16 N15 SKQ sing 406 n n C21 C20 SKQ sing 407 n n C02 N15 SKQ sing 408 n n C02 C03 SKQ sing 409 n n N15 C14 SKQ sing 410 n n C03 N04 SKQ sing 411 n n C14 C13 SKQ sing 412 n n N04 C13 SKQ sing 413 n n N04 C05 SKQ sing 414 n n C11 C05 SKQ sing 415 n n C11 N10 SKQ doub 416 n n C05 C06 SKQ doub 417 n n N10 N09 SKQ sing 418 n n C06 CL1 SKQ sing 419 n n C06 C08 SKQ sing 420 n n N09 C08 SKQ sing 421 n n C08 O12 SKQ doub 422 n n C13 H1 SKQ sing 423 n n C13 H2 SKQ sing 424 n n C17 H3 SKQ sing 425 n n C17 H4 SKQ sing 426 n n C20 H5 SKQ sing 427 n n C20 H6 SKQ sing 428 n n C21 H7 SKQ sing 429 n n C21 H8 SKQ sing 430 n n C03 H9 SKQ sing 431 n n C03 H10 SKQ sing 432 n n C11 H11 SKQ sing 433 n n C14 H12 SKQ sing 434 n n C14 H13 SKQ sing 435 n n C16 H14 SKQ sing 436 n n C18 H15 SKQ sing 437 n n C18 H16 SKQ sing 438 n n C19 H17 SKQ sing 439 n n C19 H18 SKQ sing 440 n n N09 H19 SKQ sing 441 n n # _atom_sites.entry_id 7B16 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SKQ A 1 1001 901 SKQ LIG . F 3 CA A 1 1002 902 CA CA . G 4 LPP A 1 1003 903 LPP LPP . H 4 LPP B 1 1001 903 LPP LPP . I 2 SKQ B 1 1002 901 SKQ LIG . J 3 CA B 1 1003 902 CA CA . K 4 LPP C 1 1001 903 LPP LPP . L 2 SKQ C 1 1002 901 SKQ LIG . M 3 CA C 1 1003 902 CA CA . N 4 LPP D 1 1001 903 LPP LPP . O 2 SKQ D 1 1002 901 SKQ LIG . P 3 CA D 1 1003 902 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 SKQ . . . O 2 166.551 132.939 145.938 1 32.23 ? C13 SKQ 1002 D 1 HETATM 2 C C17 SKQ . . . O 2 166.921 130.067 142.842 1 32.23 ? C17 SKQ 1002 D 1 HETATM 3 C C20 SKQ . . . O 2 164.107 128.832 142.399 1 32.23 ? C20 SKQ 1002 D 1 HETATM 4 C C21 SKQ . . . O 2 164.285 130.237 143.148 1 32.23 ? C21 SKQ 1002 D 1 HETATM 5 C C02 SKQ . . . O 2 166.395 133.533 143.083 1 32.23 ? C02 SKQ 1002 D 1 HETATM 6 C C03 SKQ . . . O 2 166.555 134.756 144.17 1 32.23 ? C03 SKQ 1002 D 1 HETATM 7 C C05 SKQ . . . O 2 166.424 135.474 146.711 1 32.23 ? C05 SKQ 1002 D 1 HETATM 8 C C06 SKQ . . . O 2 165.725 135.168 148.046 1 32.23 ? C06 SKQ 1002 D 1 HETATM 9 C C08 SKQ . . . O 2 165.645 136.274 149.155 1 32.23 ? C08 SKQ 1002 D 1 HETATM 10 C C11 SKQ . . . O 2 167.052 136.889 146.462 1 32.23 ? C11 SKQ 1002 D 1 HETATM 11 C C14 SKQ . . . O 2 165.487 132.176 145.1 1 32.23 ? C14 SKQ 1002 D 1 HETATM 12 C C16 SKQ . . . O 2 165.625 130.996 142.704 1 32.23 ? C16 SKQ 1002 D 1 HETATM 13 C C18 SKQ . . . O 2 166.734 128.676 142.073 1 32.23 ? C18 SKQ 1002 D 1 HETATM 14 C C19 SKQ . . . O 2 165.407 127.909 142.54 1 32.23 ? C19 SKQ 1002 D 1 HETATM 15 N N04 SKQ . . . O 2 166.507 134.412 145.634 1 32.23 ? N04 SKQ 1002 D 1 HETATM 16 N N09 SKQ . . . O 2 166.272 137.672 148.903 1 32.23 ? N09 SKQ 1002 D 1 HETATM 17 N N10 SKQ . . . O 2 166.97 137.978 147.564 1 32.23 ? N10 SKQ 1002 D 1 HETATM 18 N N15 SKQ . . . O 2 165.83 132.205 143.603 1 32.23 ? N15 SKQ 1002 D 1 HETATM 19 O O01 SKQ . . . O 2 166.709 133.685 141.891 1 32.23 ? O01 SKQ 1002 D 1 HETATM 20 O O12 SKQ . . . O 2 165.08 136.031 150.234 1 32.23 ? O12 SKQ 1002 D 1 HETATM 21 CL CL1 SKQ . . . O 2 164.975 133.482 148.349 1 32.23 ? CL1 SKQ 1002 D 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 530 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 21 #