data_7B1G # _model_server_result.job_id rzIb9Y1fDN5C4IkpiCpFXQ _model_server_result.datetime_utc '2024-11-22 00:25:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7b1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 7B1G # _exptl.entry_id 7B1G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 368.36 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7B1G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 417 A GLU 417 1_555 F CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc2 A OE2 GLU 417 A GLU 417 1_555 F CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc3 A OE1 GLN 420 A GLN 420 1_555 F CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc4 A OD2 ASP 438 A ASP 438 1_555 F CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc5 C OE1 GLU 417 B GLU 417 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc6 C OE2 GLU 417 B GLU 417 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 C OD1 ASN 435 B ASN 435 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 C OD1 ASP 438 B ASP 438 1_555 J CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc9 D OE1 GLU 417 C GLU 417 1_555 K CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 D OE1 GLN 420 C GLN 420 1_555 K CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 D OD2 ASP 438 C ASP 438 1_555 K CA CA . C CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc12 E OE1 GLN 420 D GLN 420 1_555 M CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc13 E OD1 ASP 438 D ASP 438 1_555 M CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? # _chem_comp.formula 'C15 H29 O8 P' _chem_comp.formula_weight 368.36 _chem_comp.id 44E _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 44E doub 1 n n O12 P 44E doub 2 n n C1 C2 44E sing 3 n n C1 O11 44E sing 4 n n C2 C3 44E sing 5 n n C2 O21 44E sing 6 n n C23 C22 44E sing 7 n n C21 O21 44E sing 8 n n C21 C22 44E sing 9 n n C3 O31 44E sing 10 n n O11 P 44E sing 11 n n P O14 44E sing 12 n n P O13 44E sing 13 n n C32 C33 44E sing 14 n n C32 C31 44E sing 15 n n O31 C31 44E sing 16 n n C33 C34 44E sing 17 n n C31 O32 44E doub 18 n n C34 C35 44E sing 19 n n C36 C35 44E sing 20 n n O13 H1 44E sing 21 n n O14 H2 44E sing 22 n n C1 H3 44E sing 23 n n C1 H4 44E sing 24 n n C2 H5 44E sing 25 n n C22 H6 44E sing 26 n n C22 H7 44E sing 27 n n C23 H8 44E sing 28 n n C23 H9 44E sing 29 n n C3 H11 44E sing 30 n n C3 H12 44E sing 31 n n C32 H13 44E sing 32 n n C32 H14 44E sing 33 n n C33 H15 44E sing 34 n n C33 H16 44E sing 35 n n C34 H17 44E sing 36 n n C34 H18 44E sing 37 n n C35 H19 44E sing 38 n n C35 H20 44E sing 39 n n C36 H21 44E sing 40 n n C36 H22 44E sing 41 n n C36 H23 44E sing 42 n n C23 C4 44E sing 43 n n C4 C5 44E sing 44 n n C5 C6 44E sing 45 n n C4 H10 44E sing 46 n n C4 H24 44E sing 47 n n C5 H25 44E sing 48 n n C5 H26 44E sing 49 n n C6 H27 44E sing 50 n n C6 H28 44E sing 51 n n C6 H29 44E sing 52 n n # _atom_sites.entry_id 7B1G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 CA A 1 1001 902 CA CA . G 4 44E A 1 1002 901 44E 44E . H 4 44E B 1 1001 901 44E 44E . I 4 44E B 1 1002 901 44E 44E . J 3 CA B 1 1003 902 CA CA . K 3 CA C 1 1001 902 CA CA . L 4 44E C 1 1002 901 44E 44E . M 3 CA D 1 1001 902 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 44E . . . G 4 111.429 109.511 148.796 1 42.42 ? O13 44E 1002 A 1 HETATM 2 P P 44E . . . G 4 110.175 108.723 149.051 1 42.42 ? P 44E 1002 A 1 HETATM 3 O O14 44E . . . G 4 109.079 109.273 148.179 1 42.42 ? O14 44E 1002 A 1 HETATM 4 O O12 44E . . . G 4 109.777 108.83 150.501 1 42.42 ? O12 44E 1002 A 1 HETATM 5 O O11 44E . . . G 4 110.428 107.153 148.661 1 42.42 ? O11 44E 1002 A 1 HETATM 6 C C1 44E . . . G 4 109.836 106.728 147.477 1 42.42 ? C1 44E 1002 A 1 HETATM 7 C C2 44E . . . G 4 110.717 107.247 146.342 1 42.42 ? C2 44E 1002 A 1 HETATM 8 O O21 44E . . . G 4 110.264 108.503 145.879 1 42.42 ? O21 44E 1002 A 1 HETATM 9 C C21 44E . . . G 4 109.404 108.544 144.77 1 42.42 ? C21 44E 1002 A 1 HETATM 10 O O22 44E . . . G 4 108.37 107.971 144.776 1 42.42 ? O22 44E 1002 A 1 HETATM 11 C C22 44E . . . G 4 109.79 109.348 143.535 1 42.42 ? C22 44E 1002 A 1 HETATM 12 C C23 44E . . . G 4 109.336 108.699 142.234 1 42.42 ? C23 44E 1002 A 1 HETATM 13 C C3 44E . . . G 4 110.793 106.193 145.231 1 42.42 ? C3 44E 1002 A 1 HETATM 14 O O31 44E . . . G 4 111.871 105.333 145.464 1 42.42 ? O31 44E 1002 A 1 HETATM 15 C C31 44E . . . G 4 112.874 105.473 144.506 1 42.42 ? C31 44E 1002 A 1 HETATM 16 O O32 44E . . . G 4 113.985 105.658 144.852 1 42.42 ? O32 44E 1002 A 1 HETATM 17 C C32 44E . . . G 4 112.527 105.399 143.021 1 42.42 ? C32 44E 1002 A 1 HETATM 18 C C33 44E . . . G 4 113.673 105.86 142.124 1 42.42 ? C33 44E 1002 A 1 HETATM 19 C C34 44E . . . G 4 113.227 106.851 141.049 1 42.42 ? C34 44E 1002 A 1 HETATM 20 C C35 44E . . . G 4 114.247 107.963 140.827 1 42.42 ? C35 44E 1002 A 1 HETATM 21 C C36 44E . . . G 4 113.904 108.832 139.623 1 42.42 ? C36 44E 1002 A 1 HETATM 22 C C4 44E . . . G 4 108.505 109.649 141.38 1 42.42 ? C4 44E 1002 A 1 HETATM 23 C C5 44E . . . G 4 109.114 109.879 140.002 1 42.42 ? C5 44E 1002 A 1 HETATM 24 C C6 44E . . . G 4 108.118 110.491 139.02 1 42.42 ? C6 44E 1002 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #