data_7B21
#
_model_server_result.job_id            NM0g8B2l0g0laHBYwE0Nag 
_model_server_result.datetime_utc      '2024-10-18 17:27:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7b21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    7B21 
#
_exptl.entry_id    7B21 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7B21 
_cell.length_a            28.509 
_cell.length_b            55.376 
_cell.length_c            55.855 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7B21 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 74 AAA CYS 74 1_555 A SG CYS 78 AAA CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
covale ? covale1 A SG CYS 19 AAA CYS 19 1_555 B CAB HEC . AAA HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale2 A SG CYS 22 AAA CYS 22 1_555 B CAC HEC . AAA HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc1 A NE2 HIS 23 AAA HIS 23 1_555 B FE HEC . AAA HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc2 A O ILE 62 AAA ILE 62 1_555 C NA NA . AAA NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc3 A O SER 63 AAA SER 63 1_555 C NA NA . AAA NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc4 A SD MET 66 AAA MET 66 1_555 B FE HEC . AAA HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc5 A O MET 66 AAA MET 66 1_555 C NA NA . AAA NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 A O GLU 71 AAA GLU 71 1_555 C NA NA . AAA NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc7 A O CYS 74 AAA CYS 74 1_555 C NA NA . AAA NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7B21 
_atom_sites.fract_transf_matrix[1][1]    0.035077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017904 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC AAA 1 101 1 HEC HEM . 
C 3 NA AAA 1 102 1 NA NA . 
D 4 EDO AAA 1 103 1 EDO EDO . 
E 4 EDO AAA 1 104 3 EDO EDO . 
F 5 HOH AAA 1 201 80 HOH HOH . 
F 5 HOH AAA 2 202 141 HOH HOH . 
F 5 HOH AAA 3 203 101 HOH HOH . 
F 5 HOH AAA 4 204 140 HOH HOH . 
F 5 HOH AAA 5 205 11 HOH HOH . 
F 5 HOH AAA 6 206 15 HOH HOH . 
F 5 HOH AAA 7 207 76 HOH HOH . 
F 5 HOH AAA 8 208 120 HOH HOH . 
F 5 HOH AAA 9 209 19 HOH HOH . 
F 5 HOH AAA 10 210 52 HOH HOH . 
F 5 HOH AAA 11 211 24 HOH HOH . 
F 5 HOH AAA 12 212 40 HOH HOH . 
F 5 HOH AAA 13 213 84 HOH HOH . 
F 5 HOH AAA 14 214 46 HOH HOH . 
F 5 HOH AAA 15 215 10 HOH HOH . 
F 5 HOH AAA 16 216 21 HOH HOH . 
F 5 HOH AAA 17 217 17 HOH HOH . 
F 5 HOH AAA 18 218 47 HOH HOH . 
F 5 HOH AAA 19 219 63 HOH HOH . 
F 5 HOH AAA 20 220 4 HOH HOH . 
F 5 HOH AAA 21 221 70 HOH HOH . 
F 5 HOH AAA 22 222 25 HOH HOH . 
F 5 HOH AAA 23 223 50 HOH HOH . 
F 5 HOH AAA 24 224 131 HOH HOH . 
F 5 HOH AAA 25 225 13 HOH HOH . 
F 5 HOH AAA 26 226 32 HOH HOH . 
F 5 HOH AAA 27 227 139 HOH HOH . 
F 5 HOH AAA 28 228 26 HOH HOH . 
F 5 HOH AAA 29 229 137 HOH HOH . 
F 5 HOH AAA 30 230 16 HOH HOH . 
F 5 HOH AAA 31 231 36 HOH HOH . 
F 5 HOH AAA 32 232 42 HOH HOH . 
F 5 HOH AAA 33 233 90 HOH HOH . 
F 5 HOH AAA 34 234 31 HOH HOH . 
F 5 HOH AAA 35 235 103 HOH HOH . 
F 5 HOH AAA 36 236 96 HOH HOH . 
F 5 HOH AAA 37 237 134 HOH HOH . 
F 5 HOH AAA 38 238 112 HOH HOH . 
F 5 HOH AAA 39 239 29 HOH HOH . 
F 5 HOH AAA 40 240 2 HOH HOH . 
F 5 HOH AAA 41 241 37 HOH HOH . 
F 5 HOH AAA 42 242 38 HOH HOH . 
F 5 HOH AAA 43 243 9 HOH HOH . 
F 5 HOH AAA 44 244 119 HOH HOH . 
F 5 HOH AAA 45 245 67 HOH HOH . 
F 5 HOH AAA 46 246 53 HOH HOH . 
F 5 HOH AAA 47 247 41 HOH HOH . 
F 5 HOH AAA 48 248 65 HOH HOH . 
F 5 HOH AAA 49 249 12 HOH HOH . 
F 5 HOH AAA 50 250 145 HOH HOH . 
F 5 HOH AAA 51 251 14 HOH HOH . 
F 5 HOH AAA 52 252 55 HOH HOH . 
F 5 HOH AAA 53 253 118 HOH HOH . 
F 5 HOH AAA 54 254 49 HOH HOH . 
F 5 HOH AAA 55 255 99 HOH HOH . 
F 5 HOH AAA 56 256 6 HOH HOH . 
F 5 HOH AAA 57 257 35 HOH HOH . 
F 5 HOH AAA 58 258 34 HOH HOH . 
F 5 HOH AAA 59 259 3 HOH HOH . 
F 5 HOH AAA 60 260 59 HOH HOH . 
F 5 HOH AAA 61 261 121 HOH HOH . 
F 5 HOH AAA 62 262 106 HOH HOH . 
F 5 HOH AAA 63 263 79 HOH HOH . 
F 5 HOH AAA 64 264 22 HOH HOH . 
F 5 HOH AAA 65 265 146 HOH HOH . 
F 5 HOH AAA 66 266 7 HOH HOH . 
F 5 HOH AAA 67 267 57 HOH HOH . 
F 5 HOH AAA 68 268 39 HOH HOH . 
F 5 HOH AAA 69 269 147 HOH HOH . 
F 5 HOH AAA 70 270 51 HOH HOH . 
F 5 HOH AAA 71 271 108 HOH HOH . 
F 5 HOH AAA 72 272 58 HOH HOH . 
F 5 HOH AAA 73 273 30 HOH HOH . 
F 5 HOH AAA 74 274 105 HOH HOH . 
F 5 HOH AAA 75 275 18 HOH HOH . 
F 5 HOH AAA 76 276 64 HOH HOH . 
F 5 HOH AAA 77 277 133 HOH HOH . 
F 5 HOH AAA 78 278 62 HOH HOH . 
F 5 HOH AAA 79 279 27 HOH HOH . 
F 5 HOH AAA 80 280 144 HOH HOH . 
F 5 HOH AAA 81 281 8 HOH HOH . 
F 5 HOH AAA 82 282 88 HOH HOH . 
F 5 HOH AAA 83 283 69 HOH HOH . 
F 5 HOH AAA 84 284 86 HOH HOH . 
F 5 HOH AAA 85 285 72 HOH HOH . 
F 5 HOH AAA 86 286 128 HOH HOH . 
F 5 HOH AAA 87 287 73 HOH HOH . 
F 5 HOH AAA 88 288 23 HOH HOH . 
F 5 HOH AAA 89 289 130 HOH HOH . 
F 5 HOH AAA 90 290 5 HOH HOH . 
F 5 HOH AAA 91 291 135 HOH HOH . 
F 5 HOH AAA 92 292 98 HOH HOH . 
F 5 HOH AAA 93 293 61 HOH HOH . 
F 5 HOH AAA 94 294 54 HOH HOH . 
F 5 HOH AAA 95 295 143 HOH HOH . 
F 5 HOH AAA 96 296 43 HOH HOH . 
F 5 HOH AAA 97 297 126 HOH HOH . 
F 5 HOH AAA 98 298 97 HOH HOH . 
F 5 HOH AAA 99 299 113 HOH HOH . 
F 5 HOH AAA 100 300 138 HOH HOH . 
F 5 HOH AAA 101 301 28 HOH HOH . 
F 5 HOH AAA 102 302 117 HOH HOH . 
F 5 HOH AAA 103 303 132 HOH HOH . 
F 5 HOH AAA 104 304 142 HOH HOH . 
F 5 HOH AAA 105 305 95 HOH HOH . 
F 5 HOH AAA 106 306 124 HOH HOH . 
F 5 HOH AAA 107 307 33 HOH HOH . 
F 5 HOH AAA 108 308 129 HOH HOH . 
F 5 HOH AAA 109 309 100 HOH HOH . 
F 5 HOH AAA 110 310 115 HOH HOH . 
F 5 HOH AAA 111 311 114 HOH HOH . 
F 5 HOH AAA 112 312 75 HOH HOH . 
F 5 HOH AAA 113 313 116 HOH HOH . 
F 5 HOH AAA 114 314 111 HOH HOH . 
F 5 HOH AAA 115 315 127 HOH HOH . 
F 5 HOH AAA 116 316 91 HOH HOH . 
F 5 HOH AAA 117 317 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 40.58 9.386 39.779 1 16.29 0 C1 EDO 103 AAA 1 
HETATM 2 O O1 EDO . . . D 4 40.55 8.239 40.592 1 17.51 0 O1 EDO 103 AAA 1 
HETATM 3 C C2 EDO . . . D 4 39.438 10.28 40.087 1 15.91 0 C2 EDO 103 AAA 1 
HETATM 4 O O2 EDO . . . D 4 38.206 9.62 40.049 1 14.85 0 O2 EDO 103 AAA 1 
HETATM 5 H H11 EDO . . . D 4 40.536 9.118 38.838 1 16.37 0 H11 EDO 103 AAA 1 
HETATM 6 H H12 EDO . . . D 4 41.42 9.871 39.925 1 16.84 0 H12 EDO 103 AAA 1 
HETATM 7 H H21 EDO . . . D 4 39.426 11.014 39.438 1 16.26 0 H21 EDO 103 AAA 1 
HETATM 8 H H22 EDO . . . D 4 39.567 10.664 40.979 1 15.64 0 H22 EDO 103 AAA 1 
HETATM 9 H HO2 EDO . . . D 4 38.074 9.232 40.802 1 14.51 0 HO2 EDO 103 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#